BLASTX nr result

ID: Coptis23_contig00012435 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012435
         (554 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315711.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21
gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides]       85   2e-20
ref|XP_002315713.1| predicted protein [Populus trichocarpa] gi|2...    99   5e-19
ref|XP_002284638.1| PREDICTED: 1-aminocyclopropane-1-carboxylate...    77   1e-18
emb|CBI23595.3| unnamed protein product [Vitis vinifera]               77   1e-18

>ref|XP_002315711.1| predicted protein [Populus trichocarpa] gi|222864751|gb|EEF01882.1|
           predicted protein [Populus trichocarpa]
          Length = 374

 Score =  107 bits (268), Expect = 1e-21
 Identities = 70/166 (42%), Positives = 73/166 (43%)
 Frame = -3

Query: 504 REMDCVIGHVLFGHYYPACPQPELTMGTTKHSDPDFLTILLQDQWXXXXXXXXXXXSTCP 325
           +EMDCV GH L  HYYPACP+PEL MGTTKHSDPDFLTILLQD                P
Sbjct: 213 KEMDCVKGHALLSHYYPACPEPELAMGTTKHSDPDFLTILLQDDIGGLQIFHQNHWIDVP 272

Query: 324 WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIGDLLQARP*HIELL*VRAFP 145
                                                 NIGDLLQA              
Sbjct: 273 ------------------------------PVHGALVVNIGDLLQA-------------- 288

Query: 144 XXXXXXXXXXXXXXXXXISNDKFFSVEHRVLANHIGPRVSAACFFT 7
                            ISNDKF SVEHRV+ANHIGPRVS A FFT
Sbjct: 289 -------------STVLISNDKFKSVEHRVVANHIGPRVSVASFFT 321


>gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 370

 Score = 84.7 bits (208), Expect(2) = 2e-20
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = -3

Query: 504 REMDCVIGHVLFGHYYPACPQPELTMGTTKHSDPDFLTILLQD 376
           +EMDCV GH L  HYYPACP+PEL MGTTKHSDPDFLTILLQD
Sbjct: 213 KEMDCVKGHALLSHYYPACPEPELAMGTTKHSDPDFLTILLQD 255



 Score = 39.7 bits (91), Expect(2) = 2e-20
 Identities = 18/24 (75%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = -1

Query: 377 ISGLQV-HQNQWIDIPPVPGALVV 309
           I GLQ+ HQN WID+PPV GALVV
Sbjct: 257 IGGLQIFHQNHWIDVPPVHGALVV 280


>ref|XP_002315713.1| predicted protein [Populus trichocarpa] gi|222864753|gb|EEF01884.1|
           predicted protein [Populus trichocarpa]
          Length = 379

 Score = 99.0 bits (245), Expect = 5e-19
 Identities = 63/165 (38%), Positives = 73/165 (44%)
 Frame = -3

Query: 501 EMDCVIGHVLFGHYYPACPQPELTMGTTKHSDPDFLTILLQDQWXXXXXXXXXXXSTCPW 322
           +MDC  G  L  HYYPACP+PELT+GT+KHSD DFLT+LLQDQ               P 
Sbjct: 216 KMDCAEGLALISHYYPACPEPELTLGTSKHSDNDFLTVLLQDQIGGLQMLHQDQWVDIP- 274

Query: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIGDLLQARP*HIELL*VRAFPX 142
                                                NIGDL+QA    I L+       
Sbjct: 275 -----------------------------PVPGALVINIGDLMQASFSFISLI------- 298

Query: 141 XXXXXXXXXXXXXXXXISNDKFFSVEHRVLANHIGPRVSAACFFT 7
                            SNDKF SVEHRVLAN +GPR+S ACFF+
Sbjct: 299 -----------------SNDKFKSVEHRVLANRVGPRISVACFFS 326


>ref|XP_002284638.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1
           [Vitis vinifera]
          Length = 363

 Score = 77.4 bits (189), Expect(2) = 1e-18
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -3

Query: 504 REMDCVIGHVLFGHYYPACPQPELTMGTTKHSDPDFLTILLQDQ 373
           ++MDC  G  +  HYYPACPQPELTMGTTKHSD DFLTILLQDQ
Sbjct: 206 KDMDCAEGLAILCHYYPACPQPELTMGTTKHSDNDFLTILLQDQ 249



 Score = 40.8 bits (94), Expect(2) = 1e-18
 Identities = 17/25 (68%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
 Frame = -1

Query: 380 KISGLQV-HQNQWIDIPPVPGALVV 309
           +I GLQV HQ+QW+D+PP PGALV+
Sbjct: 249 QIGGLQVLHQDQWVDVPPEPGALVI 273


>emb|CBI23595.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score = 77.4 bits (189), Expect(2) = 1e-18
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -3

Query: 504 REMDCVIGHVLFGHYYPACPQPELTMGTTKHSDPDFLTILLQDQ 373
           ++MDC  G  +  HYYPACPQPELTMGTTKHSD DFLTILLQDQ
Sbjct: 49  KDMDCAEGLAILCHYYPACPQPELTMGTTKHSDNDFLTILLQDQ 92



 Score = 40.8 bits (94), Expect(2) = 1e-18
 Identities = 17/25 (68%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
 Frame = -1

Query: 380 KISGLQV-HQNQWIDIPPVPGALVV 309
           +I GLQV HQ+QW+D+PP PGALV+
Sbjct: 92  QIGGLQVLHQDQWVDVPPEPGALVI 116


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