BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012434
         (2057 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257...   344   6e-92
emb|CBI27747.3| unnamed protein product [Vitis vinifera]              303   1e-79
ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|2...   286   1e-74
ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, puta...   273   2e-70
gb|AFW71893.1| putative HLH DNA-binding domain superfamily prote...   231   6e-58

>ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]
          Length = 536

 Score =  344 bits (882), Expect = 6e-92
 Identities = 230/545 (42%), Positives = 302/545 (55%), Gaps = 27/545 (4%)
 Frame = +2

Query: 35   STSPWLDVKGAPERSSWI------GNGLLFDTMGVYGEEEENITQSLIPSSFIVDNLITR 196
            S++ W DV    E SSWI       NG+L D++G+Y  +++N    +  S+ +++ L+T+
Sbjct: 10   SSTSWSDVN-VKEGSSWICGEPSQTNGMLSDSIGIYEGDKKNSPVGMTNSNLMIEGLVTQ 68

Query: 197  KTCDFA-SEDSSFDLEKSLRSGESKPRQGGTGHGSKLSLLGVLDGNPKPSYLDMQSNTSS 373
             T       +S   L K L   E+  +Q         SL G ++G+ +  Y+ +Q NT +
Sbjct: 69   DTSSIVLGGESDHGLGKGLLLEEAPRQQDLQNTEGNSSLNGAVNGSSEVGYVGLQLNTPT 128

Query: 374  TLGA---LNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRGSVPQLW 544
            +      L  P+   ++   + SS    E   VG N +E S+    + +      +PQLW
Sbjct: 129  STPCSLDLGSPKQLSLIGGMSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLW 188

Query: 545  P-PSYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFNDTIQQ-GNLPASLP--E 712
              PSY G SSL PV+G+ K QGFGLQ +YV+ +  ++ ++Y  D I Q  N+ +++P   
Sbjct: 189  SQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKG 248

Query: 713  QNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTA 892
            + E + H     A G           H  M  S L              +PQ   T  TA
Sbjct: 249  KEEQHTHPFSPSAVGP----------HMTMTASGLQS------------LPQT--TVGTA 284

Query: 893  SGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPSSNKTDKASMLDEI 1072
            SG CNG  K RVRARRGQATDPHSIAERLRREKIAERMKNLQELVP+SNKTDKASMLDEI
Sbjct: 285  SGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEI 344

Query: 1073 IEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGSTGLHLSQSTGRGVNPFKSPDDLA 1252
            IEYVKFLQLQVKVLSMSRLGAA AVVPLITD +AEGS GL LS S G+  +  +SPD +A
Sbjct: 345  IEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEGSKGLSLSPSAGQAEDICQSPDQIA 404

Query: 1253 FEEEVVKLMESDMTTAMQFLQSKGLCFMPIALXXXXXXXXXXXXXXXXDEKESILTNGLA 1432
            FE+EVVKLMES++T AMQ+LQSKGLC MPIAL                DE ++ L  G  
Sbjct: 405  FEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFI 464

Query: 1433 HHNNCQ-------------PSVGTGQRCFDGDNGLKDSMNGICREEDTPTKGCDVTLIKR 1573
             +NN               P +GT     DG     + + G    E   T  C+  + K+
Sbjct: 465  PNNNSSSNTSSSNTSSNSLPGIGTHHTSSDG-----NVLIGKLSREGITTSSCNGAINKQ 519

Query: 1574 EEVNS 1588
            EE+ S
Sbjct: 520  EELKS 524


>emb|CBI27747.3| unnamed protein product [Vitis vinifera]
          Length = 389

 Score =  303 bits (776), Expect = 1e-79
 Identities = 194/405 (47%), Positives = 236/405 (58%), Gaps = 17/405 (4%)
 Frame = +2

Query: 425  ANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRGSVPQLWP-PSYRGVSSLFPVVGQDKP 601
            + SS    E   VG N +E S+    + +      +PQLW  PSY G SSL PV+G+ K 
Sbjct: 2    SRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKM 61

Query: 602  QGFGLQRQYVETDAAVLGSKYFNDTIQQ-GNLPASLP--EQNEMNNHYMCSFAAGHQIPL 772
            QGFGLQ +YV+ +  ++ ++Y  D I Q  N+ +++P   + E + H     A G     
Sbjct: 62   QGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGP---- 117

Query: 773  GRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTASGDCNGAAKHRVRARRGQAT 952
                  H  M  S L              +PQ   T  TASG CNG  K RVRARRGQAT
Sbjct: 118  ------HMTMTASGLQS------------LPQT--TVGTASGGCNGTGKPRVRARRGQAT 157

Query: 953  DPHSIAERLRREKIAERMKNLQELVPSSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLG 1132
            DPHSIAERLRREKIAERMKNLQELVP+SNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLG
Sbjct: 158  DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLG 217

Query: 1133 AAGAVVPLITDSRAEGSTGLHLSQSTGRGVNPFKSPDDLAFEEEVVKLMESDMTTAMQFL 1312
            AA AVVPLITD +AEGS GL LS S G+  +  +SPD +AFE+EVVKLMES++T AMQ+L
Sbjct: 218  AAEAVVPLITDGQAEGSKGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTMAMQYL 277

Query: 1313 QSKGLCFMPIALXXXXXXXXXXXXXXXXDEKESILTNGLAHHNNCQ-------------P 1453
            QSKGLC MPIAL                DE ++ L  G   +NN               P
Sbjct: 278  QSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFIPNNNSSSNTSSSNTSSNSLP 337

Query: 1454 SVGTGQRCFDGDNGLKDSMNGICREEDTPTKGCDVTLIKREEVNS 1588
             +GT     DG     + + G    E   T  C+  + K+EE+ S
Sbjct: 338  GIGTHHTSSDG-----NVLIGKLSREGITTSSCNGAINKQEELKS 377


>ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|222833343|gb|EEE71820.1|
            predicted protein [Populus trichocarpa]
          Length = 456

 Score =  286 bits (733), Expect = 1e-74
 Identities = 183/403 (45%), Positives = 242/403 (60%), Gaps = 5/403 (1%)
 Frame = +2

Query: 155  LIPSSFIVDNLITRKTCDFA-SEDSSFDLEKSLRSGESKPRQGGTGHGSKLSLLGVLDGN 331
            +I S+  V++L T+ T       +S + ++K L S +++ +          S  G+  GN
Sbjct: 1    MISSNQSVESLATQDTSSVVLGSESDYAVDKVLISEQARLQNDCQNCNGNPSPDGMARGN 60

Query: 332  PKPSYLDMQSN-TSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPII 508
             K     +Q N    TL +LN P   P++ D  +  S   E+ + G N  E SE    + 
Sbjct: 61   LKFGNTGLQCNGILPTLSSLNYPNQLPIVGDLTSYLSFS-EASNAGCNGREQSEYLRSLK 119

Query: 509  DSHCRGSVPQLWPP-SYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFN-DTIQ 682
            +     S+PQLWP  SY GVSSL P++GQD+ +G GL+   ++ D  ++G  Y   D I 
Sbjct: 120  NLQNLSSIPQLWPSQSYEGVSSLPPLMGQDRIEGSGLRGGNLDDDMHIMGKGYMGMDEIL 179

Query: 683  QGNLPASLPEQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPI 862
            + +  ++ P      +   C F++G        AE +  M ++ L+              
Sbjct: 180  RLDKLSASPTTEGKEDLQSCPFSSG-------IAEPNVNMSMNQLSS------------- 219

Query: 863  PQLPHTPNTASGD-CNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPSSN 1039
              +P T + A  + CNG  K RVRARRG ATDPHSIAERLRREKIAERMKNLQELVP+SN
Sbjct: 220  --MPQTTSAAPVEGCNGTGKTRVRARRGHATDPHSIAERLRREKIAERMKNLQELVPNSN 277

Query: 1040 KTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGSTGLHLSQSTGRG 1219
            K DKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAV+PL+TD + EG   L LS S G G
Sbjct: 278  KVDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVIPLLTDGQPEGHNSLSLSPSAGLG 337

Query: 1220 VNPFKSPDDLAFEEEVVKLMESDMTTAMQFLQSKGLCFMPIAL 1348
            ++   S D +AFE+EV+KL+ESD+T AMQ+LQSKGLC MPIAL
Sbjct: 338  IDISPSADQIAFEQEVLKLLESDVTMAMQYLQSKGLCLMPIAL 380


>ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
            gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase
            beta chain, putative [Ricinus communis]
          Length = 592

 Score =  273 bits (697), Expect = 2e-70
 Identities = 208/521 (39%), Positives = 282/521 (54%), Gaps = 16/521 (3%)
 Frame = +2

Query: 35   STSPWLDVKGAPERSSWIG------NGLLFDTMGVYGEEEENITQSLIPSSFIVDNLITR 196
            S+SPW D   A ERS W        N  +  ++ ++  ++ N   S+  S   +D L  +
Sbjct: 68   SSSPWAD-GDAKERSCWDYSETGQLNVSVSTSLRLHENDKGNSLLSVTSSEQNIDCLPAQ 126

Query: 197  KTCDFASE-DSSFDLEKSLRSGESKPRQGGTGHGSKLSLLGVLDGNPKPSYLDMQSNTS- 370
             T     + +S + ++K L SG+++ ++ G       S +  ++G+ K   + +Q +T+ 
Sbjct: 127  DTPSLGLDSESDYVVDKGLFSGKAQSQKEGQNCNHDPSPM--INGSLKMKNMGLQYDTAL 184

Query: 371  STLGA--LNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRGSVPQLW 544
             TL +  L+  +  PVL D  +  S   ++   G NDS   E      D     S+ QLW
Sbjct: 185  PTLNSVGLSYSKQLPVLDDLTSPLSFT-KANRAGLNDSARFEYQRSFKDVQNPSSMTQLW 243

Query: 545  PP-SYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFN--DTIQQGNLPASLPEQ 715
            P  S+  VSSL   +GQD  Q F LQ    + D   LG +Y +  + +Q   L AS+  +
Sbjct: 244  PSTSFEDVSSLSAAMGQDTTQQFDLQGNLGD-DLDFLGRRYISMDNILQLDKLSASVVSK 302

Query: 716  NEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTA- 892
            ++ N         G+  PL R   + S M ++  T G           +  L  T +TA 
Sbjct: 303  DKEN-------LQGY--PLSRFT-VGSNMTMT--TNG-----------VSYLSQTASTAP 339

Query: 893  SGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPSSNKTDKASMLDEI 1072
            +  CNG  K RVRARRGQATDPHSIAERLRREKIAERMKNLQELVP+S+K DKASMLDEI
Sbjct: 340  AASCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSSKVDKASMLDEI 399

Query: 1073 IEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGSTGLHLSQSTGRGVNPFKSPDDLA 1252
            IEYVKFLQLQVKVLSMSRLGA GAV+PLITD +AEGS  L LS S G G++   S D +A
Sbjct: 400  IEYVKFLQLQVKVLSMSRLGATGAVIPLITDGQAEGSNSLSLSTSAGLGIDVAPSSDQIA 459

Query: 1253 FEEEVVKLMESDMTTAMQFLQSKGLCFMPIALXXXXXXXXXXXXXXXXDEKESILTN-GL 1429
            FE EV+KL+ES++T A+Q+LQ KG C MPIAL                D+K+ I  N  +
Sbjct: 460  FEHEVLKLLESNVTKAIQYLQGKGFCLMPIALAAAISSGKASLSCNSPDDKKKIRFNTDI 519

Query: 1430 AHHNNCQPSVGTGQRC-FDGDNGLKDSMNGICREEDTPTKG 1549
             H NN      +   C F G    + S +     E   +KG
Sbjct: 520  VHDNNGSSRSSSSSSCNFSGTETCQVSYDCNIMTEQLGSKG 560


>gb|AFW71893.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
          Length = 489

 Score =  231 bits (589), Expect = 6e-58
 Identities = 167/364 (45%), Positives = 203/364 (55%), Gaps = 30/364 (8%)
 Frame = +2

Query: 347  LDMQSNTSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRG 526
            L  + N++   G L      P  V  A+S+ V   S +  S  SE S + PP       G
Sbjct: 95   LGFEVNSALVAGMLGPVLSAPCAVSLADSAPVVCSSSNDSSGGSEQSGLPPPP-RFLVLG 153

Query: 527  SVPQLWPPSYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFNDTI---QQGNLP 697
              P  WP ++  +SSL    G++  + FG     V  +  V GS    D     Q GN  
Sbjct: 154  EQPASWPSAFPRISSL---AGEETSRSFGFGA--VSDNDLVRGSSCVADVNKYPQIGNAR 208

Query: 698  ASLPEQNEMNNHYMCSFAAG--------HQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQ 853
              + +  E N   M SFA G         Q  L     ++S  QLS      + +  +++
Sbjct: 209  LHVEDDVEFNTGKMLSFAPGLDFGDLQLSQKELSGLRHLNSGQQLSSFDATRNPEQSSNE 268

Query: 854  TP-------IPQLPHTPNTASGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKN 1012
                      P      N A+G  NGA K RVRARRGQATDPHSIAERLRREKI++RMKN
Sbjct: 269  ASGGGTGLNAPPFMVPANGAAG--NGAPKPRVRARRGQATDPHSIAERLRREKISDRMKN 326

Query: 1013 LQELVPSSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGS-TG 1189
            LQELVP+SN+TDKASMLDEIIEYVKFLQLQVKVLSMSRLGA  AVVPL+T S+ E S  G
Sbjct: 327  LQELVPNSNRTDKASMLDEIIEYVKFLQLQVKVLSMSRLGATEAVVPLLTQSQTENSGGG 386

Query: 1190 LHLSQSTGRG---------VNPFKSP--DDLAFEEEVVKLMESDMTTAMQFLQSKGLCFM 1336
            L LS  +G G         + P  S   D  AFE+EV +LMESDMTTAMQ+LQSKGLC M
Sbjct: 387  LLLSPRSGSGRQQQARGGSLPPPSSEVRDGAAFEQEVAQLMESDMTTAMQYLQSKGLCLM 446

Query: 1337 PIAL 1348
            P+AL
Sbjct: 447  PVAL 450