BLASTX nr result

ID: Coptis23_contig00012427 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012427
         (1010 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518977.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] ...   394   e-107
ref|XP_002517315.1| 2,4-dienoyl-CoA reductase, putative [Ricinus...   389   e-106
emb|CAN64848.1| hypothetical protein VITISV_036158 [Vitis vinifera]   389   e-106
ref|XP_002323240.1| predicted protein [Populus trichocarpa] gi|2...   383   e-104
gb|ABK93994.1| unknown [Populus trichocarpa]                          383   e-104

>ref|XP_003518977.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase FabG-like
           [Glycine max]
          Length = 282

 Score =  394 bits (1011), Expect = e-107
 Identities = 195/274 (71%), Positives = 227/274 (82%), Gaps = 3/274 (1%)
 Frame = +3

Query: 69  LEPWKRLDGKVVMITGASSGLGRELCLNLAQAGCKIIAAARRVDRLESLCEEINRMESCN 248
           LEPW  L GKVVM+TGASSGLGR+ CL+L +AGC+++ AARRVDRLESLC+EIN M + +
Sbjct: 9   LEPWHTLAGKVVMVTGASSGLGRDFCLDLGRAGCRVVVAARRVDRLESLCDEINSMAAGD 68

Query: 249 GVR---VVGIELDVNAKGEVIQGCVEKAWNSFGWIDALVNNAGVRGSVASPLDMSEDEWD 419
           G R    V +ELDV A    +   V+KAW +FG IDAL+NNAGVRG+V SPL++SE+EW+
Sbjct: 69  GGRSRRAVAVELDVAADDPAVDKYVQKAWEAFGHIDALINNAGVRGNVKSPLELSEEEWN 128

Query: 420 NTLRTNLTGSWLVSKYVCSCMCKADQPGSVINIASIGGLDRGQLPGGVGYSASKAAVNAM 599
           +  RTNLTG+WLVSKYVC  M  A + GS+INIASI GL+RGQLPGG  YS+SKA VN +
Sbjct: 129 HAFRTNLTGTWLVSKYVCKRMRDAQRKGSIINIASIAGLNRGQLPGGAAYSSSKAGVNML 188

Query: 600 TRVMALELGVHKIRVNSISPGLFKSEITQGLMHKEWLNKVALKTVPLRTFGTSDPALTSL 779
           TRVMALELG HKIRVNSISPGLFKSEIT+ LM K WLN VA+KTVPLR FGTSDPALTSL
Sbjct: 189 TRVMALELGAHKIRVNSISPGLFKSEITEKLMEKNWLNNVAMKTVPLRKFGTSDPALTSL 248

Query: 780 VRYLIHDSSDYVSGNMFIVDAGATLPGVPIFSSL 881
            RYLIHDSS+YVSGN F+VDAGATLPGVPI+SSL
Sbjct: 249 ARYLIHDSSEYVSGNNFVVDAGATLPGVPIYSSL 282


>ref|XP_002517315.1| 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
           gi|223543578|gb|EEF45108.1| 2,4-dienoyl-CoA reductase,
           putative [Ricinus communis]
          Length = 285

 Score =  389 bits (1000), Expect = e-106
 Identities = 192/276 (69%), Positives = 233/276 (84%), Gaps = 2/276 (0%)
 Frame = +3

Query: 60  ENYLEPWKRLDGKVVMITGASSGLGRELCLNLAQAGCKIIAAARRVDRLESLCEEINRME 239
           +  LEPW  LD KVV++TGAS+GLGRE CL+LA+AGCKI+AAARR+DRL+SLC+EIN++ 
Sbjct: 10  QTQLEPWCDLDNKVVLVTGASAGLGREFCLDLAKAGCKILAAARRIDRLKSLCDEINQLP 69

Query: 240 SCNGV--RVVGIELDVNAKGEVIQGCVEKAWNSFGWIDALVNNAGVRGSVASPLDMSEDE 413
           +  G   R V IELDV A G  I   V+ AW++FG IDALVNNAGVRG+V +PLD+SE+E
Sbjct: 70  NTPGAGPRAVAIELDVCADGPTIDKSVQIAWDAFGRIDALVNNAGVRGNVKTPLDLSEEE 129

Query: 414 WDNTLRTNLTGSWLVSKYVCSCMCKADQPGSVINIASIGGLDRGQLPGGVGYSASKAAVN 593
           W+  ++TNL GSW+VSKYVC  M  A   GS++NI+SI GL+RGQLPG V Y++SKA +N
Sbjct: 130 WELVVKTNLKGSWIVSKYVCIRMRDAKLGGSIVNISSIAGLNRGQLPGAVAYASSKAGLN 189

Query: 594 AMTRVMALELGVHKIRVNSISPGLFKSEITQGLMHKEWLNKVALKTVPLRTFGTSDPALT 773
           A+T+VMALELGVH IRVNSISPGLFKSEIT+GLM K+WL  +AL+TVPLR +GTSDPALT
Sbjct: 190 ALTKVMALELGVHNIRVNSISPGLFKSEITEGLMQKDWLRNIALRTVPLREYGTSDPALT 249

Query: 774 SLVRYLIHDSSDYVSGNMFIVDAGATLPGVPIFSSL 881
           SLVRYLIHDSS+YVSGN+F+VDAGATLPGVPIFSSL
Sbjct: 250 SLVRYLIHDSSEYVSGNIFVVDAGATLPGVPIFSSL 285


>emb|CAN64848.1| hypothetical protein VITISV_036158 [Vitis vinifera]
          Length = 286

 Score =  389 bits (998), Expect = e-106
 Identities = 194/280 (69%), Positives = 231/280 (82%), Gaps = 7/280 (2%)
 Frame = +3

Query: 63  NYLEPWKRLDGKVVMITGASSGLGRELCLNLAQAGCKIIAAARRVDRLESLCEEINRMES 242
           N+LEPW+ L+GKVVM+TGASSGLG E CLNLA+AGCKI+AAARRVDRL+SLC+EIN +  
Sbjct: 7   NHLEPWQDLEGKVVMVTGASSGLGSEFCLNLAKAGCKIVAAARRVDRLKSLCDEINNLTH 66

Query: 243 CN-------GVRVVGIELDVNAKGEVIQGCVEKAWNSFGWIDALVNNAGVRGSVASPLDM 401
            N        +R V +ELDV + G  I   V+KAW +FG IDAL+NNAG+RG+V SPLD+
Sbjct: 67  SNLPPNDDPPLRAVAVELDVTSDGSSIGASVQKAWEAFGRIDALLNNAGIRGNVNSPLDI 126

Query: 402 SEDEWDNTLRTNLTGSWLVSKYVCSCMCKADQPGSVINIASIGGLDRGQLPGGVGYSASK 581
           SE+EW+NTL+TNLTGSWLVSKYV   M  A   GS+INI+SI  L+RGQLPGGV Y +SK
Sbjct: 127 SEEEWNNTLKTNLTGSWLVSKYVGLRMRDAKNGGSIINISSIAALNRGQLPGGVAYVSSK 186

Query: 582 AAVNAMTRVMALELGVHKIRVNSISPGLFKSEITQGLMHKEWLNKVALKTVPLRTFGTSD 761
           + ++AMT+VMALELG + IR N+I+PGLFKSEIT GLM K+WLN VA +T P+RTFGTSD
Sbjct: 187 SGLSAMTKVMALELGAYNIRANAIAPGLFKSEITSGLMQKDWLNTVAQRTCPMRTFGTSD 246

Query: 762 PALTSLVRYLIHDSSDYVSGNMFIVDAGATLPGVPIFSSL 881
           PALTSLVRYLIHDSS Y+SGN+FIVDAGATLPGVPIFSSL
Sbjct: 247 PALTSLVRYLIHDSSRYISGNIFIVDAGATLPGVPIFSSL 286


>ref|XP_002323240.1| predicted protein [Populus trichocarpa] gi|222867870|gb|EEF05001.1|
           predicted protein [Populus trichocarpa]
          Length = 290

 Score =  383 bits (984), Expect = e-104
 Identities = 193/282 (68%), Positives = 232/282 (82%), Gaps = 11/282 (3%)
 Frame = +3

Query: 69  LEPWKRLDGKVVMITGASSGLGRELCLNLAQAGCKIIAAARRVDRLESLCEEINRM---- 236
           LEPW  L  KVV++TGASSGLG++ CL+LA+AGC+I+AAARRVDRL+SLC+EIN+M    
Sbjct: 9   LEPWCDLRNKVVLVTGASSGLGKDFCLDLAKAGCRILAAARRVDRLKSLCDEINQMSLSF 68

Query: 237 -------ESCNGVRVVGIELDVNAKGEVIQGCVEKAWNSFGWIDALVNNAGVRGSVASPL 395
                  E     R V +ELDV+A G  I  CV+KAW++FG IDALVNNAGVRG+V  PL
Sbjct: 69  PTSSSTAEVDIQPRAVAVELDVSADGNTIDKCVQKAWDAFGGIDALVNNAGVRGTVRDPL 128

Query: 396 DMSEDEWDNTLRTNLTGSWLVSKYVCSCMCKADQPGSVINIASIGGLDRGQLPGGVGYSA 575
           ++SE+EW++ +RTN TG+WLVSK VC  M  + + GSVINIASI GL+RGQLPGG+ Y A
Sbjct: 129 ELSEEEWNHVIRTNTTGTWLVSKAVCIRMRDSKRGGSVINIASIAGLNRGQLPGGIHYVA 188

Query: 576 SKAAVNAMTRVMALELGVHKIRVNSISPGLFKSEITQGLMHKEWLNKVALKTVPLRTFGT 755
           SK  VNA+++VMA+ELG +KIRVNSISPGLFKSEITQGLM K+WL+ VALKTVPLRTFGT
Sbjct: 189 SKTGVNAISKVMAMELGAYKIRVNSISPGLFKSEITQGLMQKDWLSNVALKTVPLRTFGT 248

Query: 756 SDPALTSLVRYLIHDSSDYVSGNMFIVDAGATLPGVPIFSSL 881
           +DPALTSL RYLIHDSS+YV+GN FIVDAGATLPGVP+FSSL
Sbjct: 249 ADPALTSLARYLIHDSSEYVTGNNFIVDAGATLPGVPLFSSL 290


>gb|ABK93994.1| unknown [Populus trichocarpa]
          Length = 290

 Score =  383 bits (984), Expect = e-104
 Identities = 193/282 (68%), Positives = 232/282 (82%), Gaps = 11/282 (3%)
 Frame = +3

Query: 69  LEPWKRLDGKVVMITGASSGLGRELCLNLAQAGCKIIAAARRVDRLESLCEEINRM---- 236
           LEPW  L  KVV++TGASSGLG++ CL+LA+AGC+I+AAARRVDRL+SLC+EIN+M    
Sbjct: 9   LEPWCDLRNKVVLVTGASSGLGKDFCLDLAKAGCRILAAARRVDRLKSLCDEINQMSLSF 68

Query: 237 -------ESCNGVRVVGIELDVNAKGEVIQGCVEKAWNSFGWIDALVNNAGVRGSVASPL 395
                  E     R V +ELDV+A G  I  CV+KAW++FG IDALVNNAGVRG+V  PL
Sbjct: 69  PTSSSTAEVDIQPRAVAVELDVSADGNTIDKCVQKAWDAFGGIDALVNNAGVRGTVRDPL 128

Query: 396 DMSEDEWDNTLRTNLTGSWLVSKYVCSCMCKADQPGSVINIASIGGLDRGQLPGGVGYSA 575
           ++SE+EW++ +RTN TG+WLVSK VC  M  + + GSVINIASI GL+RGQLPGG+ Y A
Sbjct: 129 ELSEEEWNHVIRTNTTGTWLVSKAVCIRMRDSKRGGSVINIASIAGLNRGQLPGGIHYVA 188

Query: 576 SKAAVNAMTRVMALELGVHKIRVNSISPGLFKSEITQGLMHKEWLNKVALKTVPLRTFGT 755
           SK  VNA+++VMA+ELG +KIRVNSISPGLFKSEITQGLM K+WL+ VALKTVPLRTFGT
Sbjct: 189 SKTGVNAISKVMAMELGAYKIRVNSISPGLFKSEITQGLMQKDWLSNVALKTVPLRTFGT 248

Query: 756 SDPALTSLVRYLIHDSSDYVSGNMFIVDAGATLPGVPIFSSL 881
           +DPALTSL RYLIHDSS+YV+GN FIVDAGATLPGVP+FSSL
Sbjct: 249 ADPALTSLARYLIHDSSEYVTGNNFIVDAGATLPGVPLFSSL 290


Top