BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012318
         (757 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39707.3| unnamed protein product [Vitis vinifera]              243   4e-62
ref|XP_002265045.1| PREDICTED: 30S ribosomal protein S10, chloro...   243   4e-62
emb|CAN74383.1| hypothetical protein VITISV_023801 [Vitis vinifera]   238   1e-60
gb|ABK96376.1| unknown [Populus trichocarpa x Populus deltoides]      235   7e-60
sp|Q9M4Y3.1|RR10_MESCR RecName: Full=30S ribosomal protein S10, ...   235   9e-60

>emb|CBI39707.3| unnamed protein product [Vitis vinifera]
          Length = 200

 Score =  243 bits (619), Expect = 4e-62
 Identities = 127/163 (77%), Positives = 140/163 (85%), Gaps = 6/163 (3%)
 Frame = -1

Query: 631 FHSLKSSQHN-NSFKLFAAPELLESVPETPD-----VPLEVVGSETPGTSRNVVDADVEK 470
           F SLK+ + + +S ++FAAPELL S  ETPD       +EV GSETPG S   +  D +K
Sbjct: 39  FSSLKTLKPSLSSSRVFAAPELLSS-QETPDGLEDSATIEVEGSETPGASALSMGVDADK 97

Query: 469 MAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 290
           MAPKQKIRIKLRSYWVPLIEDSCKQIM+AARTTNAKTMGPVPLPTKK+I+CVLKSPHVHK
Sbjct: 98  MAPKQKIRIKLRSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHK 157

Query: 289 DARFHFEIRTHQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 161
           DARFHFEIRTHQRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 158 DARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 200


>ref|XP_002265045.1| PREDICTED: 30S ribosomal protein S10, chloroplastic [Vitis
           vinifera]
          Length = 203

 Score =  243 bits (619), Expect = 4e-62
 Identities = 127/163 (77%), Positives = 140/163 (85%), Gaps = 6/163 (3%)
 Frame = -1

Query: 631 FHSLKSSQHN-NSFKLFAAPELLESVPETPD-----VPLEVVGSETPGTSRNVVDADVEK 470
           F SLK+ + + +S ++FAAPELL S  ETPD       +EV GSETPG S   +  D +K
Sbjct: 42  FSSLKTLKPSLSSSRVFAAPELLSS-QETPDGLEDSATIEVEGSETPGASALSMGVDADK 100

Query: 469 MAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 290
           MAPKQKIRIKLRSYWVPLIEDSCKQIM+AARTTNAKTMGPVPLPTKK+I+CVLKSPHVHK
Sbjct: 101 MAPKQKIRIKLRSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHK 160

Query: 289 DARFHFEIRTHQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 161
           DARFHFEIRTHQRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 161 DARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 203


>emb|CAN74383.1| hypothetical protein VITISV_023801 [Vitis vinifera]
          Length = 203

 Score =  238 bits (606), Expect = 1e-60
 Identities = 122/152 (80%), Positives = 132/152 (86%), Gaps = 5/152 (3%)
 Frame = -1

Query: 601 NSFKLFAAPELLESVPETPD-----VPLEVVGSETPGTSRNVVDADVEKMAPKQKIRIKL 437
           +S ++FAA ELL S  ETPD       +EV GSETPG S   +  D +KMAPKQKIRIKL
Sbjct: 53  SSSRVFAASELLSS-QETPDGLEDSATIEVEGSETPGASALSMGVDADKMAPKQKIRIKL 111

Query: 436 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 257
           RSYWVPLIEDSCKQIM+AARTTNAKTMGPVPLPTKK+I+CVLKSPHVHKDARFHFEIRTH
Sbjct: 112 RSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHKDARFHFEIRTH 171

Query: 256 QRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 161
           QRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 172 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 203


>gb|ABK96376.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 209

 Score =  235 bits (600), Expect = 7e-60
 Identities = 119/154 (77%), Positives = 132/154 (85%), Gaps = 10/154 (6%)
 Frame = -1

Query: 592 KLFAAPELLES------VPETPDVP----LEVVGSETPGTSRNVVDADVEKMAPKQKIRI 443
           ++FAAPE L+S      +P+T D P    L+V GSETP +    + AD +KMAPKQKIRI
Sbjct: 56  RVFAAPEALDSQTTLDPLPDTLDAPYSDTLQVEGSETPSSQSVSITADADKMAPKQKIRI 115

Query: 442 KLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIR 263
           KLRS+WV LIEDSCKQIMDAARTTNAKTMGPVPLPTKKR+YCVLKSPHVHKDARFHFEIR
Sbjct: 116 KLRSFWVKLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRVYCVLKSPHVHKDARFHFEIR 175

Query: 262 THQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 161
           THQRLIDI+YPTAQTIDSLMQLD+PAGVDVEVKL
Sbjct: 176 THQRLIDILYPTAQTIDSLMQLDIPAGVDVEVKL 209


>sp|Q9M4Y3.1|RR10_MESCR RecName: Full=30S ribosomal protein S10, chloroplastic; Flags:
           Precursor gi|188036211|pdb|3BBN|J Chain J, Homology
           Model For The Spinach Chloroplast 30s Subunit Fitted To
           9.4a Cryo-Em Map Of The 70s Chlororibosome.
           gi|7578929|gb|AAF64190.1|AF245665_1 plastid ribosomal
           protein S10 precursor [Mesembryanthemum crystallinum]
          Length = 197

 Score =  235 bits (599), Expect = 9e-60
 Identities = 121/156 (77%), Positives = 134/156 (85%)
 Frame = -1

Query: 628 HSLKSSQHNNSFKLFAAPELLESVPETPDVPLEVVGSETPGTSRNVVDADVEKMAPKQKI 449
           HS  SS  +++ ++FAAPE+LES    P+  +E  GSET       + AD ++MAPKQKI
Sbjct: 46  HSSPSSSSSSNVRVFAAPEVLESQETGPESYVEE-GSETSALG---IGADSDQMAPKQKI 101

Query: 448 RIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFE 269
           RIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFE
Sbjct: 102 RIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFE 161

Query: 268 IRTHQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 161
           IRTHQRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 162 IRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197