BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012314
         (775 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   253   4e-65
ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   249   6e-64
emb|CBI26363.3| unnamed protein product [Vitis vinifera]              245   9e-63
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...   245   9e-63
ref|XP_002312568.1| predicted protein [Populus trichocarpa] gi|2...   244   1e-62

>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  253 bits (645), Expect = 4e-65
 Identities = 120/175 (68%), Positives = 148/175 (84%)
 Frame = -2

Query: 738 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIHLLEDFASRKATKDHGYFLALTTLNTIGE 559
           MYLK++LPWNV+I  E+LDAKGL+LQR++II LLEDFAS+KATKD GY+LA+TTL +IGE
Sbjct: 1   MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60

Query: 558 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 379
           GKVR+ +G VLFPVVFN ITFK F+GE+L+GVV++V+K GVF+  GP E +++S   MPD
Sbjct: 61  GKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPD 120

Query: 378 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 214
           Y YV GENP+F+ND  SKIEKDV +RF+VIGTKW+E EREFQ L SL GD LGPV
Sbjct: 121 YHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 175


>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  249 bits (635), Expect = 6e-64
 Identities = 119/175 (68%), Positives = 150/175 (85%)
 Frame = -2

Query: 738 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIHLLEDFASRKATKDHGYFLALTTLNTIGE 559
           M+LK++LPWNV+IP ENLDAKGL+LQR++II LL++FA++KATKD GYFLA+TTL  IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 558 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 379
           GKVRQ +G VLFPV+F+ ITFK ++GE+L+GVV++V+K GVFL  GP E +++S   MPD
Sbjct: 61  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 119

Query: 378 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 214
           Y+YV GENP+F+ND LSKIEKDV +RF+VIGTKW+E EREFQ L SL GD LGPV
Sbjct: 120 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 174


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score =  245 bits (625), Expect = 9e-63
 Identities = 114/175 (65%), Positives = 147/175 (84%)
 Frame = -2

Query: 738 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIHLLEDFASRKATKDHGYFLALTTLNTIGE 559
           M+LK++LPWNV+IP E LDAKGL+LQR++II LL+ F+++KAT++ GYFLA+TTL  IGE
Sbjct: 66  MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 125

Query: 558 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 379
           GKVRQ SG VLFPVVF+C+TFK F+GE+L GVV++V+K GV L  GP E +++S   MPD
Sbjct: 126 GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 185

Query: 378 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 214
           Y+YV GENP+F+N+ LSKIEKDV +RF+V+GTKW+E EREFQ L SL GD LGP+
Sbjct: 186 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 240


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score =  245 bits (625), Expect = 9e-63
 Identities = 114/175 (65%), Positives = 147/175 (84%)
 Frame = -2

Query: 738 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIHLLEDFASRKATKDHGYFLALTTLNTIGE 559
           M+LK++LPWNV+IP E LDAKGL+LQR++II LL+ F+++KAT++ GYFLA+TTL  IGE
Sbjct: 1   MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 60

Query: 558 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 379
           GKVRQ SG VLFPVVF+C+TFK F+GE+L GVV++V+K GV L  GP E +++S   MPD
Sbjct: 61  GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 120

Query: 378 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 214
           Y+YV GENP+F+N+ LSKIEKDV +RF+V+GTKW+E EREFQ L SL GD LGP+
Sbjct: 121 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 175


>ref|XP_002312568.1| predicted protein [Populus trichocarpa] gi|222852388|gb|EEE89935.1|
           predicted protein [Populus trichocarpa]
          Length = 176

 Score =  244 bits (624), Expect = 1e-62
 Identities = 113/175 (64%), Positives = 146/175 (83%)
 Frame = -2

Query: 738 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIHLLEDFASRKATKDHGYFLALTTLNTIGE 559
           M+LK++LPWNV+IP ENLDAKGL+LQR++++ LL+DFA + ATKD GY+LA++TL +IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 558 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 379
           GKVRQ +G VLFPVVF+ ITFK F+GE+L G+V++V+K GV L  GP E +++S   MPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 378 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 214
           Y+YV GENP+F+ND  SKIEKDV +RF+V+GTKW+E EREFQ L SL GD LGPV
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 175