BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012309
         (864 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsi...    98   3e-18
ref|XP_003632148.1| PREDICTED: methyl-CpG-binding domain-contain...    95   2e-17
gb|AAM63666.1| unknown [Arabidopsis thaliana]                          95   2e-17
ref|NP_190242.1| methyl-CPG-binding domain protein 5 [Arabidopsi...    95   2e-17
ref|XP_002875791.1| hypothetical protein ARALYDRAFT_485028 [Arab...    94   3e-17

>ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsis thaliana]
           gi|75180469|sp|Q9LTJ1.1|MBD6_ARATH RecName:
           Full=Methyl-CpG-binding domain-containing protein 6;
           Short=AtMBD6; Short=MBD06; AltName:
           Full=Methyl-CpG-binding protein MBD6
           gi|8885544|dbj|BAA97474.1| unnamed protein product
           [Arabidopsis thaliana] gi|28416643|gb|AAO42852.1|
           At5g59380 [Arabidopsis thaliana]
           gi|110743343|dbj|BAE99559.1| hypothetical protein
           [Arabidopsis thaliana] gi|332009795|gb|AED97178.1|
           methyl-CPG-binding domain 6 protein [Arabidopsis
           thaliana]
          Length = 225

 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 14/144 (9%)
 Frame = +3

Query: 111 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPIKNRQFRSKREVLEYMAGKTSARSHKKSK- 287
           +WLPP W+V  + R +G +AG+ D YYYEP   R+FRS+ EVL Y+   TS R  KK++ 
Sbjct: 79  NWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAEN 138

Query: 288 ------------SNEETAN-SLPMKSSQPIKVDLDSPPEKVKWVLGNSAGISWMPFIGDE 428
                       SN  T   ++P     P+  D  +PP+KV W + N+    W+P IGD 
Sbjct: 139 TYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDV 198

Query: 429 WVPEHIKLGWAEMFNQAYSRGGCK 500
            V + ++  W+  F    SR   K
Sbjct: 199 KVQDSVRRDWSTAFTFITSRNPSK 222


>ref|XP_003632148.1| PREDICTED: methyl-CpG-binding domain-containing protein 6-like
           [Vitis vinifera]
          Length = 297

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
 Frame = +3

Query: 48  KKRKKRSGMDLAVVLDPEKNPDWLPPDWKVVTRTRPNGKSAGTKDTYYYEPIKNRQFRSK 227
           ++ +KR+    A +   E+  DWLPP W V  R R +G SAG++D Y+ EPI  R+FRSK
Sbjct: 150 RRGRKRASEATASMASVERE-DWLPPGWIVEGRVRSSGASAGSRDKYFIEPITGRRFRSK 208

Query: 228 REVLEYMAGKTSARSHKKSKSNEETANSLPMKSSQPIKVDLDSPPEKVKWV-LGNSAGIS 404
           +EV  Y+    +    KK K N + +     K S P+  + +  P+ VKWV  G+S G  
Sbjct: 209 KEVRYYL---ETGEVRKKPKKNPDNSPEKGTK-SPPLNFNFEDVPDTVKWVRTGSSEG-- 262

Query: 405 WMPFIGDEWVPEHIKLGWAEMF 470
           W PFI  + VPE  K  WA  F
Sbjct: 263 WTPFINGQEVPESSKRDWAAAF 284


>gb|AAM63666.1| unknown [Arabidopsis thaliana]
          Length = 182

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
 Frame = +3

Query: 111 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPIKNRQFRSKREVLEYM-------------- 248
           +WLPPDW+   R R +G  AGT D +YYEPI  R+FRSK EVL Y+              
Sbjct: 33  NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92

Query: 249 ---------AGKTSARSHKKSKSNEETANSLPMKSSQPIKVDLDSPPEKVKWVLGNSAGI 401
                     G+ SAR  +++KSN++     P    +P+  D  + PEKV W   N +  
Sbjct: 93  NGDSHSEHSEGRGSAR--RQTKSNKKVTEPPP----KPLNFDFLNVPEKVTWTGINGSEE 146

Query: 402 SWMPFIGDEWVPEHIKLGWAEMFNQAYSRGGCK 500
           +W+PFIGD  + E +   W  +F    S+   K
Sbjct: 147 TWLPFIGDYKIQESVSQDWDRVFTLVTSQNAGK 179


>ref|NP_190242.1| methyl-CPG-binding domain protein 5 [Arabidopsis thaliana]
           gi|75206905|sp|Q9SNC0.1|MBD5_ARATH RecName:
           Full=Methyl-CpG-binding domain-containing protein 5;
           Short=AtMBD5; Short=MBD05; AltName:
           Full=Methyl-CpG-binding protein MBD5
           gi|6523061|emb|CAB62328.1| putative protein [Arabidopsis
           thaliana] gi|17380750|gb|AAL36205.1| unknown protein
           [Arabidopsis thaliana] gi|23296870|gb|AAN13191.1|
           unknown protein [Arabidopsis thaliana]
           gi|332644653|gb|AEE78174.1| methyl-CPG-binding domain
           protein 5 [Arabidopsis thaliana]
          Length = 182

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
 Frame = +3

Query: 111 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPIKNRQFRSKREVLEYM-------------- 248
           +WLPPDW+   R R +G  AGT D +YYEPI  R+FRSK EVL Y+              
Sbjct: 33  NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92

Query: 249 ---------AGKTSARSHKKSKSNEETANSLPMKSSQPIKVDLDSPPEKVKWVLGNSAGI 401
                     G+ SAR  +++KSN++     P    +P+  D  + PEKV W   N +  
Sbjct: 93  NGDSHSEHSEGRGSAR--RQTKSNKKVTEPPP----KPLNFDFLNVPEKVTWTGINGSEE 146

Query: 402 SWMPFIGDEWVPEHIKLGWAEMFNQAYSRGGCK 500
           +W+PFIGD  + E +   W  +F    S+   K
Sbjct: 147 AWLPFIGDYKIQESVSQDWDRVFTLVTSQNAGK 179


>ref|XP_002875791.1| hypothetical protein ARALYDRAFT_485028 [Arabidopsis lyrata subsp.
           lyrata] gi|297321629|gb|EFH52050.1| hypothetical protein
           ARALYDRAFT_485028 [Arabidopsis lyrata subsp. lyrata]
          Length = 181

 Score = 94.4 bits (233), Expect = 3e-17
 Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
 Frame = +3

Query: 111 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPIKNRQFRSKREVLEYMAGKTSARSHKKSKS 290
           +WLPPDW+   R R +G  AGT D +YYEPI  R+FRSK EVL Y+      ++ KK+++
Sbjct: 33  NWLPPDWRTEVRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGAPKKAVKKAEN 92

Query: 291 NEETANSLPMKSS----------------QPIKVDLDSPPEKVKWVLGNSAGISWMPFIG 422
            +  +     + S                +P+  D  + PEKV W   N +  +W+PFIG
Sbjct: 93  GDSLSEHSEGRGSIRRQTKSNKKANEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIG 152

Query: 423 DEWVPEHIKLGWAEMF 470
           D  + E +   W   F
Sbjct: 153 DYKIQESVSQDWGRAF 168