BLASTX nr result
ID: Coptis23_contig00012307
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012307
(1430 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275451.1| PREDICTED: SWI/SNF complex subunit SWI3B [Vi... 360 5e-97
ref|XP_004145606.1| PREDICTED: SWI/SNF complex subunit SWI3B-lik... 351 3e-94
ref|XP_004157113.1| PREDICTED: SWI/SNF complex subunit SWI3B-lik... 350 4e-94
ref|XP_002300622.1| chromatin remodeling complex subunit [Populu... 333 5e-89
ref|XP_003527631.1| PREDICTED: SWI/SNF complex subunit SWI3B-lik... 332 1e-88
>ref|XP_002275451.1| PREDICTED: SWI/SNF complex subunit SWI3B [Vitis vinifera]
gi|297745602|emb|CBI40767.3| unnamed protein product
[Vitis vinifera]
Length = 492
Score = 360 bits (924), Expect = 5e-97
Identities = 192/349 (55%), Positives = 234/349 (67%), Gaps = 12/349 (3%)
Frame = +1
Query: 43 MATVSPIKEQ--ATPNQSKSLEISPTPVLPTKNKETAPGSSDSKL-----QESSNEVITI 201
MA SPIK+ A+ S + ++PT E +S S + S E I I
Sbjct: 1 MAAQSPIKDPIGASTETLTQQPDSSSSIIPTVKSEIPVAASASPSVGIVPRASEPETINI 60
Query: 202 LPSHSRWFSWDKVHECERRSLPEFFEGRLPLKNPKVYMYIRNSIIKLFRKHPSRKITFTQ 381
PS+SRWFSW+ VHECE R LPEFF+ R P KNP+VY Y RNSII FR++PSRK+TFT
Sbjct: 61 -PSYSRWFSWNNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFRQNPSRKLTFTD 119
Query: 382 VRKVLVGDVGSTRRVFDFLEGWGLINYTGAVQKSHSKLDDKENKXXXXXXXXXXXX---- 549
VRK+LVGDVGS RRVFDFLE WGLINY+G+ K K ++K+NK
Sbjct: 120 VRKILVGDVGSIRRVFDFLEAWGLINYSGSALKQPLKWEEKDNKSGGASSHTGDAGGGAV 179
Query: 550 KKETSKRFCSLCKTVCSIACFVSDKLDQTLCARCFVRGQYRIGPSNNDFRRVEISEQNMS 729
+ +R+CS CK++CSIACF DK D TLCARC+VRG YR+G +++DFRRVEISE +
Sbjct: 180 ESIPKRRWCSGCKSLCSIACFACDKFDLTLCARCYVRGNYRVGVNSSDFRRVEISEDTKA 239
Query: 730 EWTDKETLNLLEAVTHYGDDWKKVAEHVGGRTEKECVARFIKLPFAEQFINRPDSLAV-V 906
WTDKETL+LLEAV HYGDDWKKVAEHVGGR EKECV FIKL F EQ++ S V
Sbjct: 240 GWTDKETLHLLEAVLHYGDDWKKVAEHVGGRNEKECVTHFIKLSFGEQYLGHTSSGDVDN 299
Query: 907 EYQQTRTPSEAETGEDNSIPSSPAKKTRLTPFSDTSNPIMAQVAFLSAM 1053
++ Q + S+A G++N SS +KK RLTP SD SNPIMAQ AFLSA+
Sbjct: 300 KFSQAKDQSDAGFGQENIGTSSASKKMRLTPLSDASNPIMAQAAFLSAL 348
>ref|XP_004145606.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Cucumis sativus]
Length = 493
Score = 351 bits (900), Expect = 3e-94
Identities = 185/365 (50%), Positives = 237/365 (64%), Gaps = 28/365 (7%)
Frame = +1
Query: 43 MATVSPIKEQATPNQSKSLEISPTPVL--PTKNKETAPGSSDSK-------------LQE 177
MA SP+++ T +K SP+P L P ET P S L +
Sbjct: 1 MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPEDLPQ 60
Query: 178 SSNEVITILPSHSRWFSWDKVHECERRSLPEFFEGRLPLKNPKVYMYIRNSIIKLFRKHP 357
S++ LPS+SRWFSW+ +HECE R LPEFF+ R P KNP+VY Y+RNSI+K FR+ P
Sbjct: 61 STSPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECP 120
Query: 358 SRKITFTQVRKVLVGDVGSTRRVFDFLEGWGLINYTGAVQKSHSKLDDKENKXXXXXXXX 537
S+KITFT +RK LV DVGS RRVFDFLE WGLINY+ + K DD+++K
Sbjct: 121 SKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWDDRDSKSNASASNT 180
Query: 538 XXXX--------KKETSKRFCSLCKTVCSIACFVSDKLDQTLCARCFVRGQYRIGPSNND 693
K+ SKR CS CK++CSIACF DK D TLCARC+VRG YR+G S++D
Sbjct: 181 GEPGGGSANSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 240
Query: 694 FRRVEISEQNMSEWTDKETLNLLEAVTHYGDDWKKVAEHVGGRTEKECVARFIKLPFAEQ 873
FRRVEI++ ++WTDKETL+LLEA+THYGDDWKKVA+HVGGRTE+ECVA+F+KLP EQ
Sbjct: 241 FRRVEINDDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAQFVKLPLGEQ 300
Query: 874 FINRPDSLAV-----VEYQQTRTPSEAETGEDNSIPSSPAKKTRLTPFSDTSNPIMAQVA 1038
F PDS + V+ + + + TG+ + S P K+ RL+P +D SNPIMAQ A
Sbjct: 301 FHGYPDSEHIDNNCTVKDEASANLTLESTGKIGT--SIPNKRIRLSPLADASNPIMAQAA 358
Query: 1039 FLSAM 1053
FLS++
Sbjct: 359 FLSSL 363
>ref|XP_004157113.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Cucumis sativus]
Length = 555
Score = 350 bits (899), Expect = 4e-94
Identities = 185/365 (50%), Positives = 235/365 (64%), Gaps = 28/365 (7%)
Frame = +1
Query: 43 MATVSPIKEQATPNQSKSLEISPTPVL--PTKNKETAPGSSDSK-------------LQE 177
MA SP+++ T +K SP+P L P ET P S L +
Sbjct: 63 MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPEDLPQ 122
Query: 178 SSNEVITILPSHSRWFSWDKVHECERRSLPEFFEGRLPLKNPKVYMYIRNSIIKLFRKHP 357
S++ LPS+SRWFSW+ +HECE R LPEFF+ R P KNP+VY Y+RNSI+K FR+ P
Sbjct: 123 STSPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECP 182
Query: 358 SRKITFTQVRKVLVGDVGSTRRVFDFLEGWGLINYTGAVQKSHSKLDDKENKXXXXXXXX 537
S+KITFT +RK LV DVGS RRVFDFLE WGLINY+ + K DD+++K
Sbjct: 183 SKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWDDRDSKSNASASNT 242
Query: 538 XXXX--------KKETSKRFCSLCKTVCSIACFVSDKLDQTLCARCFVRGQYRIGPSNND 693
K+ SKR CS CK++CSIACF DK D TLCARC+VRG YR+G S++D
Sbjct: 243 GEPGGGSANSSAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSD 302
Query: 694 FRRVEISEQNMSEWTDKETLNLLEAVTHYGDDWKKVAEHVGGRTEKECVARFIKLPFAEQ 873
FRRVEI++ ++WTDKETL+LLEA+THYGDDWKKVA+HVGGRTE+ECVA+F+KLP EQ
Sbjct: 303 FRRVEINDDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAQFVKLPLGEQ 362
Query: 874 FINRPDSLAVVEYQQTRTPSEA-----ETGEDNSIPSSPAKKTRLTPFSDTSNPIMAQVA 1038
F PDS + + + A TG+ + S P K+ RL+P +D SNPIMAQ A
Sbjct: 363 FHGYPDSEHIDNNCTVKDEASANLMLESTGKIGT--SIPNKRIRLSPLADASNPIMAQAA 420
Query: 1039 FLSAM 1053
FLS++
Sbjct: 421 FLSSL 425
>ref|XP_002300622.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222842348|gb|EEE79895.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 500
Score = 333 bits (855), Expect = 5e-89
Identities = 178/351 (50%), Positives = 221/351 (62%), Gaps = 14/351 (3%)
Frame = +1
Query: 43 MATVSPIKEQATPNQSKSLEISPTPVLPTKNKETAPGSSDSKLQESSNEVITILPSHSRW 222
MA+VSP P S + P + P +P S +V+ I PS+SRW
Sbjct: 1 MASVSPAPPSLHPKIPLSSTVKPE-IQPPTTAAPSPRPPQPPPPSSEPDVVHI-PSYSRW 58
Query: 223 FSWDKVHECERRSLPEFFEGRLPLKNPKVYMYIRNSIIKLFRKHPSRKITFTQVRKVLVG 402
FSWD +HECE R LPEFF+ R P KNP VY Y RNSII FRK+PS K+TFT++RK LVG
Sbjct: 59 FSWDNIHECEVRFLPEFFDSRSPSKNPSVYKYYRNSIISQFRKNPSAKLTFTEIRKTLVG 118
Query: 403 DVGSTRRVFDFLEGWGLINYTGAVQKSHSKLDDKENK-------------XXXXXXXXXX 543
DVGS RRVFDFL+ WGLINY+ + K D K++
Sbjct: 119 DVGSIRRVFDFLDAWGLINYS-PLNKQLKWEDGKDSSSKTAASPAGGGGGDGGTAGDANA 177
Query: 544 XXKKETSKRFCSLCKTVCSIACFVSDKLDQTLCARCFVRGQYRIGPSNNDFRRVEISEQN 723
K+ KR CS CK++CSIACF DK D TLCARC+VRG YR+G S++DFRRVEISE+
Sbjct: 178 SNTKDNCKRLCSGCKSLCSIACFFCDKYDITLCARCYVRGNYRVGVSSSDFRRVEISEEA 237
Query: 724 MSEWTDKETLNLLEAVTHYGDDWKKVAEHVGGRTEKECVARFIKLPFAEQFINRPDSLAV 903
++WT+KETL LLEAV HY DDWKKVA+HVGGR+EK+C+ FIKLPF E F + D V
Sbjct: 238 RTDWTEKETLQLLEAVMHYRDDWKKVAQHVGGRSEKDCITHFIKLPFGEVFTDYTDVGDV 297
Query: 904 -VEYQQTRTPSEAETGEDNSIPSSPAKKTRLTPFSDTSNPIMAQVAFLSAM 1053
+Y Q + + E+G + + S +KK RL+P D SNPIMAQ AFLSA+
Sbjct: 298 DSKYNQIKDCDDDESGRNGNGSPSTSKKIRLSPLVDASNPIMAQAAFLSAL 348
>ref|XP_003527631.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Glycine max]
Length = 491
Score = 332 bits (852), Expect = 1e-88
Identities = 174/324 (53%), Positives = 214/324 (66%), Gaps = 9/324 (2%)
Frame = +1
Query: 109 PTPVLPTKNKETAPGSSDSKLQESSNEVITILPSHSRWFSWDKVHECERRSLPEFFEGRL 288
P PV + SDSK +N + ++PS+SRWFSWD + ECE R LPEFFE
Sbjct: 26 PQPVAAASAVKPEAPLSDSKASAEAN--VIVVPSYSRWFSWDSIDECEVRHLPEFFESAS 83
Query: 289 PLKNPKVYMYIRNSIIKLFRKHPSRKITFTQVRKVLVGDVGSTRRVFDFLEGWGLINYTG 468
K+P+VY Y RNSI+K FR +P+RKITFT VRK LVGDVGS RRVFDFLE WGLINY
Sbjct: 84 --KSPRVYKYYRNSIVKYFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYHP 141
Query: 469 AVQKSHS-KLDDKENKXXXXXXXXXXXXK--KETSKRFCSLCKTVCSIACFVSDKLDQTL 639
+ + K DDKE K KE +KR CS CK VC+IACF DK D TL
Sbjct: 142 SSSLTKPLKWDDKETKSDSASNTTESSSAPAKENTKRLCSGCKVVCTIACFACDKYDLTL 201
Query: 640 CARCFVRGQYRIGPSNNDFRRVEISEQNMSEWTDKETLNLLEAVTHYGDDWKKVAEHVGG 819
CARC+VRG YR+G +++DFRRVEISE+ ++W +KET NLLEA+THY DDWK+V++HV G
Sbjct: 202 CARCYVRGNYRVGVNSSDFRRVEISEETKTDWNEKETTNLLEAITHYSDDWKRVSQHVPG 261
Query: 820 RTEKECVARFIKLPFAEQFINRPDSLAVVEYQQTRTP------SEAETGEDNSIPSSPAK 981
RTEKECVA F+KLPF +QF + AV + P ++AE+ D + P K
Sbjct: 262 RTEKECVAHFLKLPFVDQFQHYQQHPAVNGTDDSCNPLKRVTNADAESELDTVASAEPNK 321
Query: 982 KTRLTPFSDTSNPIMAQVAFLSAM 1053
+ RLTP +D SNPIMAQ AFLSA+
Sbjct: 322 RMRLTPLADASNPIMAQAAFLSAL 345