BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012294
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-li...   117   1e-24
gb|AEL99203.1| DNA polymerase alpha subunit B family protein, pa...   114   8e-24
ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   113   1e-23
gb|AEL99204.1| DNA polymerase alpha subunit B family protein, pa...   110   9e-23
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...   110   2e-22

>ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus]
           gi|449486914|ref|XP_004157440.1| PREDICTED: DNA
           polymerase alpha subunit B-like [Cucumis sativus]
          Length = 622

 Score =  117 bits (292), Expect = 1e-24
 Identities = 56/85 (65%), Positives = 68/85 (80%)
 Frame = -3

Query: 255 DSFPF*VSPDMEFPPAKKQAMDHEFQPNSPSSTPKKLSLVITAGPFTTTDNLLFEPLVEL 76
           DSFP   + D   PPAKK A++H+ QP + SSTP +LS++I +GP+TTTDNLLFEPL EL
Sbjct: 322 DSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLTEL 381

Query: 75  LAYATRKQPQLLMLLGPFVDSEHPE 1
           LAYA RK PQLL+LLGPFVDSEH +
Sbjct: 382 LAYAKRKVPQLLILLGPFVDSEHSD 406


>gb|AEL99203.1| DNA polymerase alpha subunit B family protein, partial [Silene
           latifolia]
          Length = 315

 Score =  114 bits (285), Expect = 8e-24
 Identities = 55/85 (64%), Positives = 65/85 (76%)
 Frame = -3

Query: 255 DSFPF*VSPDMEFPPAKKQAMDHEFQPNSPSSTPKKLSLVITAGPFTTTDNLLFEPLVEL 76
           D  PF  S D +  P K+QA+D +  P+  S  P +LS++I AGPFTTTDNL FEPL EL
Sbjct: 229 DLIPFPASSDCDLHPVKRQAVDEDGLPSLQSPAPSELSVIIAAGPFTTTDNLFFEPLSEL 288

Query: 75  LAYATRKQPQLLMLLGPFVDSEHPE 1
           LAYA+RKQPQLL+LLGPFVDSEHPE
Sbjct: 289 LAYASRKQPQLLILLGPFVDSEHPE 313


>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  113 bits (283), Expect = 1e-23
 Identities = 57/85 (67%), Positives = 63/85 (74%)
 Frame = -3

Query: 255 DSFPF*VSPDMEFPPAKKQAMDHEFQPNSPSSTPKKLSLVITAGPFTTTDNLLFEPLVEL 76
           DS P     D++  PAKKQA D EFQ    S    +LSL++ AGPFTTTDNLLFEPL EL
Sbjct: 322 DSIPVSAPTDVDLHPAKKQARDEEFQSADSSHKLAELSLMVAAGPFTTTDNLLFEPLTEL 381

Query: 75  LAYATRKQPQLLMLLGPFVDSEHPE 1
           LAYA RK PQLL+LLGPFVDSEHPE
Sbjct: 382 LAYARRKMPQLLILLGPFVDSEHPE 406


>gb|AEL99204.1| DNA polymerase alpha subunit B family protein, partial [Silene
           latifolia]
          Length = 315

 Score =  110 bits (276), Expect = 9e-23
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = -3

Query: 255 DSFPF*VSPDMEFPPAKKQAMDHEFQPNSPSSTPKKLSLVITAGPFTTTDNLLFEPLVEL 76
           D  PF  S D +  P K+QA+D +  P+  S    +LS++I AGPFTTTDNL FEPL EL
Sbjct: 229 DLIPFPASSDCDLHPVKRQALDEDGLPSLQSPALSELSVIIAAGPFTTTDNLFFEPLSEL 288

Query: 75  LAYATRKQPQLLMLLGPFVDSEHPE 1
           LAYA+RKQPQLL+LLGPFVDSEHPE
Sbjct: 289 LAYASRKQPQLLILLGPFVDSEHPE 313


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score =  110 bits (274), Expect = 2e-22
 Identities = 54/85 (63%), Positives = 66/85 (77%)
 Frame = -3

Query: 255 DSFPF*VSPDMEFPPAKKQAMDHEFQPNSPSSTPKKLSLVITAGPFTTTDNLLFEPLVEL 76
           DS P   +PD   PPAKKQA+D E +    S T +++S++I +GPFTT DNL+FEPL EL
Sbjct: 321 DSIPLSAAPDGNLPPAKKQALDQEIESIGSSCT-QEISVLIASGPFTTLDNLMFEPLTEL 379

Query: 75  LAYATRKQPQLLMLLGPFVDSEHPE 1
           LAYA+RK PQLL+LLGPFVDSEHPE
Sbjct: 380 LAYASRKLPQLLILLGPFVDSEHPE 404