BLASTX nr result
ID: Coptis23_contig00012258
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012258
(549 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004148818.1| PREDICTED: putative transcription elongation... 216 8e-64
ref|XP_004162900.1| PREDICTED: putative transcription elongation... 216 8e-64
ref|XP_002313759.1| global transcription factor group [Populus t... 211 2e-62
emb|CAN68098.1| hypothetical protein VITISV_043874 [Vitis vinifera] 212 4e-62
ref|XP_003634397.1| PREDICTED: putative transcription elongation... 212 4e-62
>ref|XP_004148818.1| PREDICTED: putative transcription elongation factor SPT5 homolog
1-like [Cucumis sativus]
Length = 1044
Score = 216 bits (550), Expect(2) = 8e-64
Identities = 107/155 (69%), Positives = 130/155 (83%), Gaps = 2/155 (1%)
Frame = -1
Query: 459 GREFVKKKV-VPAQRPMNIDEAREMHIRVVSRRDPITGDYFENIGGMMFKDGFLFKTVAM 283
GRE KKK VP R MNIDEARE+HIRV RRDPITG+YFENIGGM FKDGFL+KTV+M
Sbjct: 319 GREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSM 378
Query: 282 KSISSQNIQPTFDEFEKFWKP-KDGYYDIASFSTLAVSRRKCHFMKGDAVVIIEGDLKDL 106
KSIS+QNI+PTFDE EKF KP ++G DIAS STL +R+K HFMKGDAV++++GDLK+L
Sbjct: 379 KSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNL 438
Query: 105 MGWIEKVEDEIVHIRLKIKGLHETICINEKSLCKY 1
GW+EKVE+E VHIR ++KGL +T+ +NE+ LCKY
Sbjct: 439 KGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKY 473
Score = 53.1 bits (126), Expect(2) = 8e-64
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -3
Query: 547 VVDVDNVRQRVKVKLIPRIDLQSLANKLD 461
VVDVDNVRQRV VKLIPRIDLQ+LANKL+
Sbjct: 290 VVDVDNVRQRVTVKLIPRIDLQALANKLE 318
>ref|XP_004162900.1| PREDICTED: putative transcription elongation factor SPT5 homolog
1-like, partial [Cucumis sativus]
Length = 849
Score = 216 bits (550), Expect(2) = 8e-64
Identities = 107/155 (69%), Positives = 130/155 (83%), Gaps = 2/155 (1%)
Frame = -1
Query: 459 GREFVKKKV-VPAQRPMNIDEAREMHIRVVSRRDPITGDYFENIGGMMFKDGFLFKTVAM 283
GRE KKK VP R MNIDEARE+HIRV RRDPITG+YFENIGGM FKDGFL+KTV+M
Sbjct: 128 GREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSM 187
Query: 282 KSISSQNIQPTFDEFEKFWKP-KDGYYDIASFSTLAVSRRKCHFMKGDAVVIIEGDLKDL 106
KSIS+QNI+PTFDE EKF KP ++G DIAS STL +R+K HFMKGDAV++++GDLK+L
Sbjct: 188 KSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNL 247
Query: 105 MGWIEKVEDEIVHIRLKIKGLHETICINEKSLCKY 1
GW+EKVE+E VHIR ++KGL +T+ +NE+ LCKY
Sbjct: 248 KGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKY 282
Score = 53.1 bits (126), Expect(2) = 8e-64
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -3
Query: 547 VVDVDNVRQRVKVKLIPRIDLQSLANKLD 461
VVDVDNVRQRV VKLIPRIDLQ+LANKL+
Sbjct: 99 VVDVDNVRQRVTVKLIPRIDLQALANKLE 127
>ref|XP_002313759.1| global transcription factor group [Populus trichocarpa]
gi|222850167|gb|EEE87714.1| global transcription factor
group [Populus trichocarpa]
Length = 1042
Score = 211 bits (538), Expect(2) = 2e-62
Identities = 103/155 (66%), Positives = 129/155 (83%), Gaps = 2/155 (1%)
Frame = -1
Query: 459 GREFVKKKV-VPAQRPMNIDEAREMHIRVVSRRDPITGDYFENIGGMMFKDGFLFKTVAM 283
GRE KKK VP R MN+DEARE+HIRV RRDP+TGDYFENIGGM+FKDGFL+KTV+M
Sbjct: 327 GREAPKKKAFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSM 386
Query: 282 KSISSQNIQPTFDEFEKFWKP-KDGYYDIASFSTLAVSRRKCHFMKGDAVVIIEGDLKDL 106
KSIS+QNI+P+FDE EKF P ++G D+AS STL +R+K HFMKGDAV++++GDLK L
Sbjct: 387 KSISAQNIKPSFDELEKFRSPGENGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKSL 446
Query: 105 MGWIEKVEDEIVHIRLKIKGLHETICINEKSLCKY 1
GW+EKV++E VHIR ++KGL +T+ +NEK LCKY
Sbjct: 447 KGWVEKVDEENVHIRPEMKGLPKTLAVNEKELCKY 481
Score = 53.1 bits (126), Expect(2) = 2e-62
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -3
Query: 547 VVDVDNVRQRVKVKLIPRIDLQSLANKLD 461
VVDVDNVRQRV VKLIPRIDLQ+LANKL+
Sbjct: 298 VVDVDNVRQRVTVKLIPRIDLQALANKLE 326
>emb|CAN68098.1| hypothetical protein VITISV_043874 [Vitis vinifera]
Length = 1107
Score = 212 bits (539), Expect(2) = 4e-62
Identities = 108/157 (68%), Positives = 128/157 (81%), Gaps = 4/157 (2%)
Frame = -1
Query: 459 GREFVKKKVV-PAQRPMNIDEAREMHIRVVSRRDPITGDYFENIGGMMFKDGFLFKTVAM 283
GRE V KK P R MN++EAREMHIRV RRDP+TGDYFENIGGMMFKDGFL+KTV+M
Sbjct: 315 GREVVTKKAFKPPPRFMNVEEAREMHIRVERRRDPMTGDYFENIGGMMFKDGFLYKTVSM 374
Query: 282 KSISSQNIQPTFDEFEKFWKP---KDGYYDIASFSTLAVSRRKCHFMKGDAVVIIEGDLK 112
KSIS QNIQPTFDE EKF P +DG D+AS STL +R+K HFMKGDAV+I++GDLK
Sbjct: 375 KSISVQNIQPTFDELEKFRTPGETEDG--DMASLSTLFANRKKGHFMKGDAVIIVKGDLK 432
Query: 111 DLMGWIEKVEDEIVHIRLKIKGLHETICINEKSLCKY 1
+L GW+EKVE+E VHIR ++KGL +T+ +NEK LCKY
Sbjct: 433 NLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKY 469
Score = 51.6 bits (122), Expect(2) = 4e-62
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -3
Query: 547 VVDVDNVRQRVKVKLIPRIDLQSLANKLD 461
VVDVDNVRQRV V+LIPRIDLQ+LANKL+
Sbjct: 286 VVDVDNVRQRVTVQLIPRIDLQALANKLE 314
>ref|XP_003634397.1| PREDICTED: putative transcription elongation factor SPT5 homolog
1-like isoform 2 [Vitis vinifera]
Length = 1044
Score = 212 bits (539), Expect(2) = 4e-62
Identities = 108/157 (68%), Positives = 128/157 (81%), Gaps = 4/157 (2%)
Frame = -1
Query: 459 GREFVKKKVV-PAQRPMNIDEAREMHIRVVSRRDPITGDYFENIGGMMFKDGFLFKTVAM 283
GRE V KK P R MN++EAREMHIRV RRDP+TGDYFENIGGMMFKDGFL+KTV+M
Sbjct: 315 GREVVTKKAFKPPPRFMNVEEAREMHIRVERRRDPMTGDYFENIGGMMFKDGFLYKTVSM 374
Query: 282 KSISSQNIQPTFDEFEKFWKP---KDGYYDIASFSTLAVSRRKCHFMKGDAVVIIEGDLK 112
KSIS QNIQPTFDE EKF P +DG D+AS STL +R+K HFMKGDAV+I++GDLK
Sbjct: 375 KSISVQNIQPTFDELEKFRTPGETEDG--DMASLSTLFANRKKGHFMKGDAVIIVKGDLK 432
Query: 111 DLMGWIEKVEDEIVHIRLKIKGLHETICINEKSLCKY 1
+L GW+EKVE+E VHIR ++KGL +T+ +NEK LCKY
Sbjct: 433 NLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKY 469
Score = 51.6 bits (122), Expect(2) = 4e-62
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -3
Query: 547 VVDVDNVRQRVKVKLIPRIDLQSLANKLD 461
VVDVDNVRQRV V+LIPRIDLQ+LANKL+
Sbjct: 286 VVDVDNVRQRVTVQLIPRIDLQALANKLE 314