BLASTX nr result
ID: Coptis23_contig00012219
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012219
(1808 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helica... 707 0.0
ref|XP_002302733.1| predicted protein [Populus trichocarpa] gi|2... 678 0.0
ref|XP_004162448.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP... 665 0.0
ref|XP_004136163.1| PREDICTED: probable ATP-dependent RNA helica... 665 0.0
ref|XP_003521949.1| PREDICTED: probable ATP-dependent RNA helica... 648 0.0
>ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis
vinifera]
Length = 1414
Score = 707 bits (1824), Expect = 0.0
Identities = 385/603 (63%), Positives = 451/603 (74%), Gaps = 1/603 (0%)
Frame = +2
Query: 2 VVHVSRPNEVEENRKDLPXXXXXXXXXXAINERSTVIICGETGCGKTTQVPQFLYEAGFG 181
VVHVSRP EVE NRKDLP AIN+ + VIICGETGCGKTTQVPQFLYEAGFG
Sbjct: 342 VVHVSRPTEVENNRKDLPIVMMEQEIMEAINDHTAVIICGETGCGKTTQVPQFLYEAGFG 401
Query: 182 SSKTSVRSGIIGVTQPRRVAVLATAKRVAFELGLRLGKEVGFQVRHDRKIGDSCSIKFMT 361
S + SV+SGIIGVTQPRRVAVLATAKRVAFELGL LGKEVGFQVRHD+ IGDSCSIKFMT
Sbjct: 402 SKQASVQSGIIGVTQPRRVAVLATAKRVAFELGLSLGKEVGFQVRHDKMIGDSCSIKFMT 461
Query: 362 DGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRVIQVRQRMYQEQHEKVLSG 541
DGILLREVQ+DF L+RYSVIILDEAHERSLNTDILIGMLSRVIQVRQ++Y+EQ + +LSG
Sbjct: 462 DGILLREVQNDFSLRRYSVIILDEAHERSLNTDILIGMLSRVIQVRQKLYEEQQQMMLSG 521
Query: 542 VYVSPENIISPLKLVLMSATLRVEDFVSQRKLFSEPPPVIEVSARQFPVRLYHTKKTDPN 721
V +SPE+++ LKLVLMSATLRVEDF+S R+LF PPPVIEV +RQFPV ++ +K+T+
Sbjct: 522 VRISPESMVPQLKLVLMSATLRVEDFISGRRLFHTPPPVIEVPSRQFPVTIHFSKRTE-- 579
Query: 722 PEEDYLVQAYKKVITIHKRLPPGGILVFVTGQREVEYLCSKLRKTSEELSYLSSKRKTEN 901
DY+ QAYKK+++IHK+LP GGILVFVTGQREVEYLC KLRK S EL SSK+ N
Sbjct: 580 -IVDYIGQAYKKILSIHKKLPQGGILVFVTGQREVEYLCQKLRKASRELMLNSSKQNIGN 638
Query: 902 EVTLTSEKNSIVQGLDMKDISEAFENHDRFTHQQIDKFNXXXXXXXXXXXXXXXXXPNSG 1081
EVT SE NS V G+D+++I+EAFE +QQ D+F+ +S
Sbjct: 639 EVTAVSEMNS-VGGIDIEEINEAFEIQGNSANQQTDRFSIYDEDHGDLDEDDSDSSYDSE 697
Query: 1082 KESDLTINXXXXXXXXXXXSGFLENGGKHVDVLGEPSSLSALKAAFESLAGKHPPNADSE 1261
ES+ + S E+ G VD+LGE SL++LKAAF++LAGK N +S+
Sbjct: 698 TESEWEVLGDDGNPLDLKTS---EDDGNLVDILGEDRSLASLKAAFDALAGKTAINHNSK 754
Query: 1262 VLDLADPPSTKG-CSISPPFVSEEKPRGPSVPCAGGLHVLPLYAMLPAAAQLRVFDKVKG 1438
++ P T G CS +K G + AG L VLPLYAMLPAAAQLRVF+++K
Sbjct: 755 GEEVV--PDTPGRCSDQSNPNMGKKRDGENDLSAGALCVLPLYAMLPAAAQLRVFEEIKE 812
Query: 1439 GERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYNSTNGMEEYKVQWISKXXXXXXXXX 1618
GERLVVVATNVAETSLTIPGIKYVVDTGREKVK Y+ +NGME Y+VQWISK
Sbjct: 813 GERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDHSNGMETYEVQWISKASAAQRAGR 872
Query: 1619 XXXTEPGYCYRLYSKAAFSNIFPEFSTAEISKIPVDGVVLLMKSMGIDKVANFPFPTPPE 1798
T PG+CYRLYS A F+NI P+FS AEI K+PV+GV+LLMKSM IDKVANFPFPTPP+
Sbjct: 873 AGRTGPGHCYRLYSSAVFNNILPDFSMAEILKVPVEGVILLMKSMDIDKVANFPFPTPPD 932
Query: 1799 AAA 1807
A A
Sbjct: 933 AIA 935
>ref|XP_002302733.1| predicted protein [Populus trichocarpa] gi|222844459|gb|EEE82006.1|
predicted protein [Populus trichocarpa]
Length = 1130
Score = 678 bits (1750), Expect = 0.0
Identities = 375/602 (62%), Positives = 437/602 (72%)
Frame = +2
Query: 2 VVHVSRPNEVEENRKDLPXXXXXXXXXXAINERSTVIICGETGCGKTTQVPQFLYEAGFG 181
VVHVSRP+EVE+ RKDLP AINE STVIICGETGCGKTTQVPQFLYEAG+G
Sbjct: 154 VVHVSRPDEVEKKRKDLPIIMMEQEIMEAINEHSTVIICGETGCGKTTQVPQFLYEAGYG 213
Query: 182 SSKTSVRSGIIGVTQPRRVAVLATAKRVAFELGLRLGKEVGFQVRHDRKIGDSCSIKFMT 361
S+ + VR+G+IGVTQPRR+AVLATA+RVAFELGL LGKEVGFQVRHD++IGD+CSIKFMT
Sbjct: 214 SNHSVVRNGVIGVTQPRRIAVLATARRVAFELGLHLGKEVGFQVRHDKRIGDNCSIKFMT 273
Query: 362 DGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRVIQVRQRMYQEQHEKVLSG 541
DGILLREVQ+D LLKRYSVIILDEAHERS+NTDILIGMLSRVIQ+RQ+ Y++Q + VLSG
Sbjct: 274 DGILLREVQTDILLKRYSVIILDEAHERSVNTDILIGMLSRVIQLRQKKYEQQQKLVLSG 333
Query: 542 VYVSPENIISPLKLVLMSATLRVEDFVSQRKLFSEPPPVIEVSARQFPVRLYHTKKTDPN 721
+SPEN+I PLKLVLMSATLRVEDF+S+R+LF +PPPVI V RQF V ++ +K+T+
Sbjct: 334 QSLSPENMIFPLKLVLMSATLRVEDFISERRLFHDPPPVINVPTRQFEVTVHFSKRTE-- 391
Query: 722 PEEDYLVQAYKKVITIHKRLPPGGILVFVTGQREVEYLCSKLRKTSEELSYLSSKRKTEN 901
DY+ QAYKKV++IHKRLP GGILVFVTGQREVEYLC KLRK S EL ++K + +
Sbjct: 392 -TVDYIGQAYKKVMSIHKRLPQGGILVFVTGQREVEYLCQKLRKASTELIANTAKGRAGD 450
Query: 902 EVTLTSEKNSIVQGLDMKDISEAFENHDRFTHQQIDKFNXXXXXXXXXXXXXXXXXPNSG 1081
EV SE SI +G+DMKDI EAFE QQ ++F +SG
Sbjct: 451 EVPAMSEMVSI-EGVDMKDIDEAFEIQGNSIDQQTERFGSHDEGVPDSEDESDVSY-DSG 508
Query: 1082 KESDLTINXXXXXXXXXXXSGFLENGGKHVDVLGEPSSLSALKAAFESLAGKHPPNADSE 1261
ES++ I S EN V VL E SSL+ALK AFE+LAG++ SE
Sbjct: 509 SESEVEIVGDEVDIEDSKTS---EN--DVVGVLREKSSLAALKCAFEALAGENASECKSE 563
Query: 1262 VLDLADPPSTKGCSISPPFVSEEKPRGPSVPCAGGLHVLPLYAMLPAAAQLRVFDKVKGG 1441
+ P E+K G L V+PLYAMLPA AQL VFD+VK G
Sbjct: 564 GKQVPSMPEEYPEQYKNSM--EKKTVGDKGLFTSALRVMPLYAMLPAVAQLHVFDEVKEG 621
Query: 1442 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYNSTNGMEEYKVQWISKXXXXXXXXXX 1621
ERLVVVATNVAETSLTIPGIKYVVDTGREKVK YNS+NGME Y+VQWISK
Sbjct: 622 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYNSSNGMEAYEVQWISKASADQRKGRA 681
Query: 1622 XXTEPGYCYRLYSKAAFSNIFPEFSTAEISKIPVDGVVLLMKSMGIDKVANFPFPTPPEA 1801
T PG+CYRLYS A ++NI P+FS AEISK+PVD +VL++KSM IDKV FPFPTPPEA
Sbjct: 682 GRTGPGHCYRLYSSAVYNNILPDFSCAEISKVPVDSIVLVLKSMHIDKVEKFPFPTPPEA 741
Query: 1802 AA 1807
AA
Sbjct: 742 AA 743
>ref|XP_004162448.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DHX37-like [Cucumis sativus]
Length = 1333
Score = 665 bits (1717), Expect = 0.0
Identities = 370/602 (61%), Positives = 435/602 (72%)
Frame = +2
Query: 2 VVHVSRPNEVEENRKDLPXXXXXXXXXXAINERSTVIICGETGCGKTTQVPQFLYEAGFG 181
VV VSRP EVE+ RKDLP AINE VIICGETGCGKTTQVPQFLYEAGFG
Sbjct: 273 VVPVSRPCEVEDKRKDLPIVMMEQEIMEAINENPIVIICGETGCGKTTQVPQFLYEAGFG 332
Query: 182 SSKTSVRSGIIGVTQPRRVAVLATAKRVAFELGLRLGKEVGFQVRHDRKIGDSCSIKFMT 361
SS++S + G IGVTQPRRVAVLATAKRVA+ELG+RLGKEVGFQVR+D+KIGD+ SIKFMT
Sbjct: 333 SSQSSHQRGAIGVTQPRRVAVLATAKRVAYELGVRLGKEVGFQVRYDKKIGDTSSIKFMT 392
Query: 362 DGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRVIQVRQRMYQEQHEKVLSG 541
DGILLREVQ DFLLKRYSV+ILDEAHERS+NTDILIGMLSRV+++RQ ++ +Q + LSG
Sbjct: 393 DGILLREVQHDFLLKRYSVLILDEAHERSMNTDILIGMLSRVVKLRQDLHMKQRQLTLSG 452
Query: 542 VYVSPENIISPLKLVLMSATLRVEDFVSQRKLFSEPPPVIEVSARQFPVRLYHTKKTDPN 721
+SPEN+I PLKLVLMSATLRVEDFVS +LF PP+IEV RQFPV ++ +K+TD
Sbjct: 453 GKISPENMIFPLKLVLMSATLRVEDFVSGGRLFHVSPPIIEVPTRQFPVTVHFSKRTD-- 510
Query: 722 PEEDYLVQAYKKVITIHKRLPPGGILVFVTGQREVEYLCSKLRKTSEELSYLSSKRKTEN 901
DY+ QAYKKV+ IHK+LPPGGILVFVTGQREVE LC KLR+ S++L +S+R EN
Sbjct: 511 -IVDYIGQAYKKVMAIHKKLPPGGILVFVTGQREVENLCKKLREASKKLIKKTSERHGEN 569
Query: 902 EVTLTSEKNSIVQGLDMKDISEAFENHDRFTHQQIDKFNXXXXXXXXXXXXXXXXXPNSG 1081
+ E NSI Q LDM +I+EAFE+H+ F+ +Q D+F+ NS
Sbjct: 570 NNGIV-EMNSI-QNLDMNEINEAFEDHE-FSIEQTDRFSSFDKDEFDINDDVSDASYNSE 626
Query: 1082 KESDLTINXXXXXXXXXXXSGFLENGGKHVDVLGEPSSLSALKAAFESLAGKHPPNADSE 1261
+S+L N E G DV+ + +S+S+LKAAF++L K+ + D
Sbjct: 627 SDSELEFNEDAMSD---------ETDGNLTDVVMDDASMSSLKAAFDALDRKNALDLDKR 677
Query: 1262 VLDLADPPSTKGCSISPPFVSEEKPRGPSVPCAGGLHVLPLYAMLPAAAQLRVFDKVKGG 1441
+D + E G SV G LHVLPLYAMLPAAAQLRVF++VK G
Sbjct: 678 QVDHTTDEDLSSKQCVSARLKENVEFGFSV---GALHVLPLYAMLPAAAQLRVFEEVKEG 734
Query: 1442 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYNSTNGMEEYKVQWISKXXXXXXXXXX 1621
ERLVVVATNVAETSLTIPGIKYVVDTGREKVK YNS+NG+E Y+VQWISK
Sbjct: 735 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKTYNSSNGIENYEVQWISKASAAQRAGRA 794
Query: 1622 XXTEPGYCYRLYSKAAFSNIFPEFSTAEISKIPVDGVVLLMKSMGIDKVANFPFPTPPEA 1801
T PG+CYRLYS A FSN P+FS AEI+KIPVDGVVLLMKSMGI KV NFPFPTPPE
Sbjct: 795 GRTGPGHCYRLYSSAVFSNTLPDFSLAEIAKIPVDGVVLLMKSMGISKVVNFPFPTPPET 854
Query: 1802 AA 1807
+A
Sbjct: 855 SA 856
>ref|XP_004136163.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Cucumis
sativus]
Length = 1333
Score = 665 bits (1717), Expect = 0.0
Identities = 370/602 (61%), Positives = 435/602 (72%)
Frame = +2
Query: 2 VVHVSRPNEVEENRKDLPXXXXXXXXXXAINERSTVIICGETGCGKTTQVPQFLYEAGFG 181
VV VSRP EVE+ RKDLP AINE VIICGETGCGKTTQVPQFLYEAGFG
Sbjct: 273 VVPVSRPCEVEDKRKDLPIVMMEQEIMEAINENPIVIICGETGCGKTTQVPQFLYEAGFG 332
Query: 182 SSKTSVRSGIIGVTQPRRVAVLATAKRVAFELGLRLGKEVGFQVRHDRKIGDSCSIKFMT 361
SS++S + G IGVTQPRRVAVLATAKRVA+ELG+RLGKEVGFQVR+D+KIGD+ SIKFMT
Sbjct: 333 SSQSSHQRGAIGVTQPRRVAVLATAKRVAYELGVRLGKEVGFQVRYDKKIGDTSSIKFMT 392
Query: 362 DGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRVIQVRQRMYQEQHEKVLSG 541
DGILLREVQ DFLLKRYSV+ILDEAHERS+NTDILIGMLSRV+++RQ ++ +Q + LSG
Sbjct: 393 DGILLREVQHDFLLKRYSVLILDEAHERSMNTDILIGMLSRVVKLRQDLHMKQRQLTLSG 452
Query: 542 VYVSPENIISPLKLVLMSATLRVEDFVSQRKLFSEPPPVIEVSARQFPVRLYHTKKTDPN 721
+SPEN+I PLKLVLMSATLRVEDFVS +LF PP+IEV RQFPV ++ +K+TD
Sbjct: 453 GKISPENMIFPLKLVLMSATLRVEDFVSGGRLFHVSPPIIEVPTRQFPVTVHFSKRTD-- 510
Query: 722 PEEDYLVQAYKKVITIHKRLPPGGILVFVTGQREVEYLCSKLRKTSEELSYLSSKRKTEN 901
DY+ QAYKKV+ IHK+LPPGGILVFVTGQREVE LC KLR+ S++L +S+R EN
Sbjct: 511 -IVDYIGQAYKKVMAIHKKLPPGGILVFVTGQREVENLCKKLREASKKLIKKTSERHGEN 569
Query: 902 EVTLTSEKNSIVQGLDMKDISEAFENHDRFTHQQIDKFNXXXXXXXXXXXXXXXXXPNSG 1081
+ E NSI Q LDM +I+EAFE+H+ F+ +Q D+F+ NS
Sbjct: 570 NNGIV-EMNSI-QNLDMNEINEAFEDHE-FSIEQTDRFSSFDKDEFDINDDVSDASYNSE 626
Query: 1082 KESDLTINXXXXXXXXXXXSGFLENGGKHVDVLGEPSSLSALKAAFESLAGKHPPNADSE 1261
+S+L N E G DV+ + +S+S+LKAAF++L K+ + D
Sbjct: 627 SDSELEFNEDAMSD---------ETDGNLTDVVMDDASMSSLKAAFDALDRKNALDLDKR 677
Query: 1262 VLDLADPPSTKGCSISPPFVSEEKPRGPSVPCAGGLHVLPLYAMLPAAAQLRVFDKVKGG 1441
+D + E G SV G LHVLPLYAMLPAAAQLRVF++VK G
Sbjct: 678 QVDHTTDEDLSSKQCVSARLKENVEFGFSV---GALHVLPLYAMLPAAAQLRVFEEVKEG 734
Query: 1442 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYNSTNGMEEYKVQWISKXXXXXXXXXX 1621
ERLVVVATNVAETSLTIPGIKYVVDTGREKVK YNS+NG+E Y+VQWISK
Sbjct: 735 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKTYNSSNGIENYEVQWISKASAAQRAGRA 794
Query: 1622 XXTEPGYCYRLYSKAAFSNIFPEFSTAEISKIPVDGVVLLMKSMGIDKVANFPFPTPPEA 1801
T PG+CYRLYS A FSN P+FS AEI+KIPVDGVVLLMKSMGI KV NFPFPTPPE
Sbjct: 795 GRTGPGHCYRLYSSAVFSNTLPDFSLAEIAKIPVDGVVLLMKSMGISKVVNFPFPTPPET 854
Query: 1802 AA 1807
+A
Sbjct: 855 SA 856
>ref|XP_003521949.1| PREDICTED: probable ATP-dependent RNA helicase DHR1-like [Glycine
max]
Length = 1380
Score = 648 bits (1671), Expect = 0.0
Identities = 361/596 (60%), Positives = 424/596 (71%)
Frame = +2
Query: 2 VVHVSRPNEVEENRKDLPXXXXXXXXXXAINERSTVIICGETGCGKTTQVPQFLYEAGFG 181
VVHV RP EVE+ RKDLP AIN+RS+VIICGETGCGKTTQVPQFLYEAG+G
Sbjct: 308 VVHVYRPTEVEDKRKDLPIVMMEQEIMEAINDRSSVIICGETGCGKTTQVPQFLYEAGYG 367
Query: 182 SSKTSVRSGIIGVTQPRRVAVLATAKRVAFELGLRLGKEVGFQVRHDRKIGDSCSIKFMT 361
SSK GIIGVTQPRRVAVLATAKRVA+ELGL LGKEVGFQVR+D+KIG+SCSIKFMT
Sbjct: 368 SSK-----GIIGVTQPRRVAVLATAKRVAYELGLHLGKEVGFQVRYDKKIGESCSIKFMT 422
Query: 362 DGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRVIQVRQRMYQEQHEKVLSG 541
DGILLREVQ+D LL+RYSV+ILDEAHERSLNTDILIGMLSRVI+ RQ +Y EQ + +LSG
Sbjct: 423 DGILLREVQNDILLRRYSVLILDEAHERSLNTDILIGMLSRVIKTRQMIYNEQQKMILSG 482
Query: 542 VYVSPENIISPLKLVLMSATLRVEDFVSQRKLFSEPPPVIEVSARQFPVRLYHTKKTDPN 721
+SPE ++ PLKLVLMSATLRV+DF S KLF PPPVIEV RQFPV Y +KKT+
Sbjct: 483 ENISPEKMVFPLKLVLMSATLRVQDFTS-GKLFHTPPPVIEVPTRQFPVTAYFSKKTE-- 539
Query: 722 PEEDYLVQAYKKVITIHKRLPPGGILVFVTGQREVEYLCSKLRKTSEELSYLSSKRKTEN 901
+ DY+ +AYKKV+ IHKRLPPGGILVF+TGQREVE LC KLRK S E + E
Sbjct: 540 -KTDYIGEAYKKVLAIHKRLPPGGILVFLTGQREVEDLCRKLRKASREFIKKKVEGSLET 598
Query: 902 EVTLTSEKNSIVQGLDMKDISEAFENHDRFTHQQIDKFNXXXXXXXXXXXXXXXXXPNSG 1081
+ T+ E NS V+G+++ +I+EAFE H + QQ D+F+ +S
Sbjct: 599 DSTVVHETNS-VEGVNINEINEAFEVHGSSSIQQTDRFSCYDEDEDNVNWNESDFSYDSE 657
Query: 1082 KESDLTINXXXXXXXXXXXSGFLENGGKHVDVLGEPSSLSALKAAFESLAGKHPPNADSE 1261
+S+L + EN VDVLG+ SL++LKAAFE L+G+ ++ +E
Sbjct: 658 TDSELEFDEDDDNLE------LSENKSNIVDVLGQAGSLASLKAAFEKLSGQATLSSSNE 711
Query: 1262 VLDLADPPSTKGCSISPPFVSEEKPRGPSVPCAGGLHVLPLYAMLPAAAQLRVFDKVKGG 1441
+ ++ V EK + G L VLPLYAMLPAAAQLRVF++VK G
Sbjct: 712 ----EEASVNIEGNLDQSKVFREKRAKENCSTPGALCVLPLYAMLPAAAQLRVFEEVKDG 767
Query: 1442 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYNSTNGMEEYKVQWISKXXXXXXXXXX 1621
ERLVVVATNVAETSLTIPGIKYVVDTGREKVK Y+ +NGME Y+VQWISK
Sbjct: 768 ERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEVQWISKASAAQRAGRS 827
Query: 1622 XXTEPGYCYRLYSKAAFSNIFPEFSTAEISKIPVDGVVLLMKSMGIDKVANFPFPT 1789
T PG+CYRLYS AAFSN FPE S AE+ K+PV GVVLL+KSM I KVANFPFPT
Sbjct: 828 GRTGPGHCYRLYSSAAFSNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPT 883