BLASTX nr result
ID: Coptis23_contig00012196
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012196
(671 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|2... 219 3e-71
ref|XP_002274259.1| PREDICTED: putative pentatricopeptide repeat... 222 1e-70
emb|CBI27286.3| unnamed protein product [Vitis vinifera] 222 1e-70
ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat... 227 1e-69
ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago ... 216 1e-67
>ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|222867489|gb|EEF04620.1|
predicted protein [Populus trichocarpa]
Length = 502
Score = 219 bits (558), Expect(2) = 3e-71
Identities = 106/137 (77%), Positives = 121/137 (88%)
Frame = -1
Query: 413 RIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHTCIMLLQ 234
R EA+K+VE IEK DI VYH LIKGL++ R+ASEATQVFREMI++GCEP MHT IMLLQ
Sbjct: 331 RHAEAHKVVERIEKTDISVYHGLIKGLVRSRRASEATQVFREMINRGCEPTMHTYIMLLQ 390
Query: 233 GHLGKRGRKGPDPVVNFETIFVGGLVKLGKSLEATKNVERIMSGGVEVPRFDYNKFLHSF 54
GHLGKRGRKGPDP+VNFE+IFVGGL+K GKSLEATK VER M G +EVPRFDYNKFLH +
Sbjct: 391 GHLGKRGRKGPDPLVNFESIFVGGLIKAGKSLEATKYVERTMKGSLEVPRFDYNKFLHYY 450
Query: 53 SNEEGVAMFEDVGKKLR 3
S+EEGV MF++VGKKLR
Sbjct: 451 SSEEGVVMFKEVGKKLR 467
Score = 75.9 bits (185), Expect(2) = 3e-71
Identities = 34/52 (65%), Positives = 45/52 (86%)
Frame = -2
Query: 670 VSDLGLSSYRLVINWLCKKGMVLQSYVLFDEMIKRGIHADNATLASLVYGLL 515
+ DL LS+YRLVI+W+C+KG V+Q+ ++FDEM +RGI ADN+TL SLVYGLL
Sbjct: 276 MDDLALSTYRLVIDWMCRKGKVVQAQMVFDEMRQRGIQADNSTLGSLVYGLL 327
>ref|XP_002274259.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g26500-like [Vitis vinifera]
Length = 525
Score = 222 bits (565), Expect(2) = 1e-70
Identities = 105/137 (76%), Positives = 123/137 (89%)
Frame = -1
Query: 413 RIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHTCIMLLQ 234
R+REA KI EGIE+ DI VYH +IKGLL+LRKA EATQVFREMI +GCEP MHT IMLLQ
Sbjct: 330 RVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQ 389
Query: 233 GHLGKRGRKGPDPVVNFETIFVGGLVKLGKSLEATKNVERIMSGGVEVPRFDYNKFLHSF 54
GHLGK+GRKGP P+VNF++IFVGGL+K+GKSL+A+K VER+M GG+EVPRFDYN+FLH +
Sbjct: 390 GHLGKKGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCY 449
Query: 53 SNEEGVAMFEDVGKKLR 3
SNEEGV MFE+VGKKLR
Sbjct: 450 SNEEGVFMFEEVGKKLR 466
Score = 70.9 bits (172), Expect(2) = 1e-70
Identities = 30/50 (60%), Positives = 43/50 (86%)
Frame = -2
Query: 664 DLGLSSYRLVINWLCKKGMVLQSYVLFDEMIKRGIHADNATLASLVYGLL 515
+L LS+Y LVI+W+CK+G V Q+Y++F+EM+KRGI DN T++SL+YGLL
Sbjct: 277 ELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLL 326
>emb|CBI27286.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 222 bits (565), Expect(2) = 1e-70
Identities = 105/137 (76%), Positives = 123/137 (89%)
Frame = -1
Query: 413 RIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHTCIMLLQ 234
R+REA KI EGIE+ DI VYH +IKGLL+LRKA EATQVFREMI +GCEP MHT IMLLQ
Sbjct: 328 RVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQ 387
Query: 233 GHLGKRGRKGPDPVVNFETIFVGGLVKLGKSLEATKNVERIMSGGVEVPRFDYNKFLHSF 54
GHLGK+GRKGP P+VNF++IFVGGL+K+GKSL+A+K VER+M GG+EVPRFDYN+FLH +
Sbjct: 388 GHLGKKGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCY 447
Query: 53 SNEEGVAMFEDVGKKLR 3
SNEEGV MFE+VGKKLR
Sbjct: 448 SNEEGVFMFEEVGKKLR 464
Score = 70.9 bits (172), Expect(2) = 1e-70
Identities = 30/50 (60%), Positives = 43/50 (86%)
Frame = -2
Query: 664 DLGLSSYRLVINWLCKKGMVLQSYVLFDEMIKRGIHADNATLASLVYGLL 515
+L LS+Y LVI+W+CK+G V Q+Y++F+EM+KRGI DN T++SL+YGLL
Sbjct: 275 ELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLL 324
>ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g26500-like [Glycine max]
Length = 494
Score = 227 bits (578), Expect(2) = 1e-69
Identities = 108/138 (78%), Positives = 122/138 (88%)
Frame = -1
Query: 416 RRIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHTCIMLL 237
RR+REAY++ EGIE D+CVYH IKGLLKLR+A EATQVFREMI +GCEP MHT IMLL
Sbjct: 324 RRVREAYRVFEGIEVPDLCVYHGFIKGLLKLRRAGEATQVFREMIRRGCEPTMHTYIMLL 383
Query: 236 QGHLGKRGRKGPDPVVNFETIFVGGLVKLGKSLEATKNVERIMSGGVEVPRFDYNKFLHS 57
QGHLG+RGRKG DP+VNF+TIFVGG+VK GKS EATK VER+++ G+EVPRFDYNKFLH
Sbjct: 384 QGHLGRRGRKGTDPLVNFDTIFVGGMVKAGKSKEATKYVERVLNRGMEVPRFDYNKFLHY 443
Query: 56 FSNEEGVAMFEDVGKKLR 3
FSNEEGV MFEDVGKKLR
Sbjct: 444 FSNEEGVHMFEDVGKKLR 461
Score = 62.8 bits (151), Expect(2) = 1e-69
Identities = 26/52 (50%), Positives = 42/52 (80%)
Frame = -2
Query: 670 VSDLGLSSYRLVINWLCKKGMVLQSYVLFDEMIKRGIHADNATLASLVYGLL 515
+++LG S+Y LVI WLCKKGM+ +++ +F+EM +RG+ +++TL +VYGLL
Sbjct: 270 MNELGASTYGLVIRWLCKKGMMARAHEVFEEMRERGVRVNDSTLGDVVYGLL 321
>ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago truncatula]
gi|355515382|gb|AES97005.1| hypothetical protein
MTR_5g044120 [Medicago truncatula]
Length = 507
Score = 216 bits (551), Expect(2) = 1e-67
Identities = 105/137 (76%), Positives = 120/137 (87%)
Frame = -1
Query: 413 RIREAYKIVEGIEKVDICVYHALIKGLLKLRKASEATQVFREMISKGCEPIMHTCIMLLQ 234
R+REAY+IVE I+ VDI VYH LIKGLLKLR+ASEATQVFREMI +GCEP MHT IMLLQ
Sbjct: 328 RVREAYQIVEKIDVVDISVYHGLIKGLLKLRRASEATQVFREMIKRGCEPTMHTYIMLLQ 387
Query: 233 GHLGKRGRKGPDPVVNFETIFVGGLVKLGKSLEATKNVERIMSGGVEVPRFDYNKFLHSF 54
GHLG+RGRKG DP+VNF++IFVGG+VK+G S EA K VER+M+ G+EVPRFDYNKFLH F
Sbjct: 388 GHLGRRGRKGTDPLVNFDSIFVGGMVKVGHSKEAIKYVERVMNRGMEVPRFDYNKFLHYF 447
Query: 53 SNEEGVAMFEDVGKKLR 3
SNEEG MFE+V KKLR
Sbjct: 448 SNEEGAVMFEEVAKKLR 464
Score = 66.2 bits (160), Expect(2) = 1e-67
Identities = 29/52 (55%), Positives = 41/52 (78%)
Frame = -2
Query: 670 VSDLGLSSYRLVINWLCKKGMVLQSYVLFDEMIKRGIHADNATLASLVYGLL 515
+ +LG+S+YR+VI WLCKKGM+ ++ +FDEM +RGI D+ TL +VYGLL
Sbjct: 273 MDELGVSTYRVVIKWLCKKGMMDNAHEVFDEMCERGIRVDSLTLGYVVYGLL 324