BLASTX nr result
ID: Coptis23_contig00012189
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00012189
(1173 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera] 353 6e-95
ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containi... 351 2e-94
ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|2... 349 7e-94
ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|2... 349 7e-94
ref|XP_002512576.1| pentatricopeptide repeat-containing protein,... 327 5e-87
>emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]
Length = 730
Score = 353 bits (905), Expect = 6e-95
Identities = 189/381 (49%), Positives = 250/381 (65%), Gaps = 9/381 (2%)
Frame = -1
Query: 1116 MTLNFSSLIISKQIPRWVCFISSLSCITTHAT---------TQNYPNSPEFESKTRFXXX 964
M + SSL +S++IP+WV I+S+S I++ T+ PN EFE K +F
Sbjct: 1 MAVKLSSLTLSRRIPKWVPLIASMSSISSANRIQAVPEIDQTKTPPNDNEFEPKFQFLRN 60
Query: 963 XXXXXXXXLHILDSTKDLNSSVNIFKWATSQKRFYHTADTYFLMILKLGMAGNVQDMEFF 784
+LD+T DLNS++ +FKWA+ QKRF HTADTYF +ILKLGM G ++DME F
Sbjct: 61 RLMPDDLI-RVLDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDMEAF 119
Query: 783 CNEMVKDKCPHAEEAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLV 604
C+EMV++KCP EE L+ SFVK+RR EA+RVL M +K I N +L LV
Sbjct: 120 CSEMVREKCPGGEETLIALISSFVKHRRLSEAIRVLVIMTSNGYKFSIIEF-NGLLGALV 178
Query: 603 EDQRDLETVLFAYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNS 424
++RD +L YKEIVKAGIVPNVDTLNYLIE L E + ++ ALDQYRRM++KGC PNS
Sbjct: 179 RERRDFREILLVYKEIVKAGIVPNVDTLNYLIEALFELNWIDLALDQYRRMSKKGCSPNS 238
Query: 423 RTFEILICGLCKRNRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKM 244
+TF+ILI GL RN V +S++VL EM +LEC DL+F SV+PL C ++ +E + L+
Sbjct: 239 KTFDILISGLIARNLVEKSVVVLGEMIELECEADLSFYTSVIPLFCSVHQVEEGMMLFWR 298
Query: 243 MRDSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSK 64
MR S ++ D L+Y VLI CL E+L LDDAI L E+M+ G+ P ++V IV G CKL K
Sbjct: 299 MRASKLVPDLLIYRVLIQCLSESLWLDDAINLLEEMIGCGLTPEDDVFVYIVKGFCKLGK 358
Query: 63 FSNASNLLEENLVTEVIPHNA 1
F+ A L++ V PHNA
Sbjct: 359 FNEAEFFLKDKCVFGTDPHNA 379
>ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62590-like
[Vitis vinifera]
Length = 730
Score = 351 bits (901), Expect = 2e-94
Identities = 189/381 (49%), Positives = 248/381 (65%), Gaps = 9/381 (2%)
Frame = -1
Query: 1116 MTLNFSSLIISKQIPRWVCFISSLSCITTHAT---------TQNYPNSPEFESKTRFXXX 964
M + SSL +S +IP+WV I+S+S I+ T+ PN EFE K +F
Sbjct: 1 MAVKLSSLTLSSRIPKWVPLIASMSSISCANRIQAVPEIDQTKTPPNDNEFEPKFQFLRN 60
Query: 963 XXXXXXXXLHILDSTKDLNSSVNIFKWATSQKRFYHTADTYFLMILKLGMAGNVQDMEFF 784
+LD+T DLNS++ +FKWA+ QKRF HTADTYF +ILKLGM G ++DME F
Sbjct: 61 RLMPDDLI-RVLDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDMEAF 119
Query: 783 CNEMVKDKCPHAEEAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLV 604
C+EMV++KCP EE L+ SFVK+RR EA+RVL M +K I N +L LV
Sbjct: 120 CSEMVREKCPGGEETLIALISSFVKHRRLSEAIRVLVIMTSNGYKFSIIEF-NGLLGALV 178
Query: 603 EDQRDLETVLFAYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNS 424
++RD +L YKEIVKAGIVPNVDTLNYLIE L E + ++ ALDQYRRM++KGC PNS
Sbjct: 179 RERRDFREILLVYKEIVKAGIVPNVDTLNYLIEALFELNWIDLALDQYRRMSKKGCSPNS 238
Query: 423 RTFEILICGLCKRNRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKM 244
+TF+ILI GL RN V +S++VL EM +LEC DL+F SV+PL C ++ +E + L+
Sbjct: 239 KTFDILISGLIARNLVEKSVVVLGEMIELECEADLSFYTSVIPLFCSVHQVEEGMMLFWR 298
Query: 243 MRDSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSK 64
MR S ++ D L+Y VLI CL E+L LDDAI L E+M+ G+ P ++V IV G CKL K
Sbjct: 299 MRASKLVPDLLIYRVLIQCLSESLWLDDAINLLEEMIGCGLTPEDDVFVYIVKGFCKLGK 358
Query: 63 FSNASNLLEENLVTEVIPHNA 1
F+ A L++ V PHNA
Sbjct: 359 FNEAEFFLKDKCVFGTDPHNA 379
>ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|222871421|gb|EEF08552.1|
predicted protein [Populus trichocarpa]
Length = 725
Score = 349 bits (896), Expect = 7e-94
Identities = 177/368 (48%), Positives = 250/368 (67%), Gaps = 7/368 (1%)
Frame = -1
Query: 1083 KQIPRWV---CFISSLSCITT----HATTQNYPNSPEFESKTRFXXXXXXXXXXXLHILD 925
K+IP+WV FISS+SC T QN PN P+F+ K + + +L
Sbjct: 9 KRIPKWVNLKAFISSVSCTNTIQINPEINQNTPNFPDFDVKIQ-SLRNKLYPDNLIKVLK 67
Query: 924 STKDLNSSVNIFKWATSQKRFYHTADTYFLMILKLGMAGNVQDMEFFCNEMVKDKCPHAE 745
ST D+NS+V IFKWA Q++F HTADTY+ +I KLGMAGNV++ME FC MVK++C E
Sbjct: 68 STSDVNSAVKIFKWAALQRKFNHTADTYYWIIFKLGMAGNVEEMEGFCQNMVKERCTGEE 127
Query: 744 EAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLFAY 565
+ LVD+FV+N R EA+RVL MNL KP SI + N +L LVE++R + V+F Y
Sbjct: 128 DVLVSLVDAFVRNCRLNEAMRVLFNMNLAGIKP-SIDVFNFVLGALVEEKRGFQDVVFVY 186
Query: 564 KEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLCKR 385
KE+VKAG+ P++DTLNYL+EVL E D+++SALDQYRR+N+KGC P+ +TFEI+I GL
Sbjct: 187 KEMVKAGVAPSIDTLNYLLEVLFETDRVDSALDQYRRINKKGCRPDGKTFEIVIKGLIAN 246
Query: 384 NRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKMMRDSGVLVDSLVY 205
+RV +S+ +L EM +L C P+L+F + +PL C+ ++ +E +RL++ M++S DS +Y
Sbjct: 247 DRVDDSVSILHEMLELGCLPELSFYRTTIPLFCREDRLEEGIRLFRKMKESNFTPDSFIY 306
Query: 204 EVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSKFSNASNLLEENLV 25
LI CLC+ L LD+A+ L E+M++S + +++VD+VNG CKL K + A LLE+ V
Sbjct: 307 GALIQCLCKQLRLDEAVNLLEEMMESQLEGDNNVFVDVVNGFCKLGKINEAVKLLEDKHV 366
Query: 24 TEVIPHNA 1
E PHNA
Sbjct: 367 LETSPHNA 374
Score = 64.7 bits (156), Expect = 4e-08
Identities = 53/251 (21%), Positives = 115/251 (45%)
Frame = -1
Query: 777 EMVKDKCPHAEEAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLVED 598
EM++ + F ++V+ F K + EA+++LE ++ + P N +LR +
Sbjct: 328 EMMESQLEGDNNVFVDVVNGFCKLGKINEAVKLLEDKHVLETSPH-----NALLRCCCDA 382
Query: 597 QRDLETVLFAYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRT 418
+ L + E + + + D+ N LI LCE ++M A + RM +P+ T
Sbjct: 383 DKFL--MAKGLLEKMSERNIDDCDSWNILIRWLCEREEMVKAYELLGRMIISSLIPDYAT 440
Query: 417 FEILICGLCKRNRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKMMR 238
+ L+ G C+ ++ +++ + ++ D ++ LC+ K E ++++ M
Sbjct: 441 YSALVAGNCRLSKYEDALQLFLQLHAKCWILDPASYSELIEGLCRGEKYLEAVKVFCYMS 500
Query: 237 DSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSKFS 58
++ + SL + +LI +C+ ++ +A+ L SG + + + Y ++ L K +
Sbjct: 501 ENRCSLQSLPFIMLIKGICDMGMIGEAVRLQSLAYNSGTSCVNATYNYVMLRLSKSEQGR 560
Query: 57 NASNLLEENLV 25
+ L LV
Sbjct: 561 HVLAFLSRMLV 571
>ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|222857302|gb|EEE94849.1|
predicted protein [Populus trichocarpa]
Length = 724
Score = 349 bits (896), Expect = 7e-94
Identities = 180/370 (48%), Positives = 248/370 (67%), Gaps = 7/370 (1%)
Frame = -1
Query: 1089 ISKQIPRWV---CFISSLSCITT----HATTQNYPNSPEFESKTRFXXXXXXXXXXXLHI 931
+SK IP+W+ FISS+SC QN PN +F++K + + +
Sbjct: 7 LSKTIPKWLNLKSFISSVSCTNAIQINPEINQNAPNITDFDAKIQ-SLRNKLCPDYLIKV 65
Query: 930 LDSTKDLNSSVNIFKWATSQKRFYHTADTYFLMILKLGMAGNVQDMEFFCNEMVKDKCPH 751
L ST D+NS+V +FKWA+ Q+RF HT DTY+ +I KLGMA NV++ME FC MVKD+CP
Sbjct: 66 LKSTSDINSAVKLFKWASLQRRFNHTDDTYYWIIFKLGMAENVEEMEGFCQNMVKDRCPG 125
Query: 750 AEEAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLF 571
E+ LVD+FV+N R EALRVL MNL KP SI + N +L LVE++R + V+F
Sbjct: 126 VEDVLLSLVDAFVRNCRLNEALRVLFNMNLAGIKP-SIDVFNFVLGALVEEKRGFQDVVF 184
Query: 570 AYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLC 391
YKE+VKAG+ P++DTLNYL+EVL E D+++SALDQYRR+N+KGC+PNSRTFEI+I GL
Sbjct: 185 VYKEMVKAGVAPSIDTLNYLLEVLFETDRVDSALDQYRRINKKGCIPNSRTFEIVIKGLI 244
Query: 390 KRNRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKMMRDSGVLVDSL 211
+NRV +S+ +L EM +L C P+L F S + L C ++ + +RL++ M+DS D
Sbjct: 245 AKNRVDDSVTILHEMLELGCLPELRFFRSTILLFCGEDRLQQGIRLFRKMKDSNFTPDPF 304
Query: 210 VYEVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSKFSNASNLLEEN 31
+Y LI CLC++L LD+A L E+M++S + P +++VDIVNG CKL K + A LLE+
Sbjct: 305 IYGALIQCLCKHLRLDEAANLLEEMMESRLTPDNNVFVDIVNGFCKLGKINEAIKLLEDK 364
Query: 30 LVTEVIPHNA 1
V PHNA
Sbjct: 365 HVHVTSPHNA 374
Score = 62.8 bits (151), Expect = 2e-07
Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 3/271 (1%)
Frame = -1
Query: 828 LKLGMAGNVQDMEFFCNEMVKDKCPHAEEAFTELVDSFVKNRRFKEALRVLETMNLGKFK 649
L+L A N+ + EM++ + F ++V+ F K + EA+++LE ++
Sbjct: 317 LRLDEAANLLE------EMMESRLTPDNNVFVDIVNGFCKLGKINEAIKLLEDKHVHVTS 370
Query: 648 PPSIHICNVMLRTLVEDQRDLETVLFAYKEIVKAGIVPNVD---TLNYLIEVLCENDKME 478
P N +LR + + F K +++ N+D + N LI LCE +
Sbjct: 371 PH-----NALLRCCCDADK-----FFMAKGLLEKMSERNIDDCDSWNILIRWLCEKVGVM 420
Query: 477 SALDQYRRMNRKGCVPNSRTFEILICGLCKRNRVGESIMVLSEMFKLECGPDLNFCDSVL 298
+A + RM +P+ T+ L+ G C+ ++ +++ + ++ D ++
Sbjct: 421 NAYELLGRMIISSLIPDCATYSALVAGNCRLSKYEDALQLFLQLHAKFWILDPASYSELI 480
Query: 297 PLLCKANKSDEVLRLYKMMRDSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEDMLKSGVA 118
LC+ K E ++++ M ++ + SL + +LI +C +L++A+ L SG +
Sbjct: 481 EGLCRGEKYLEAVKVFCYMSENRCSLQSLSFNMLIEGVCNMGMLNEAVRLQLLGYNSGTS 540
Query: 117 PLVSIYVDIVNGLCKLSKFSNASNLLEENLV 25
+ I+ GL K K + L + LV
Sbjct: 541 CSNATCNYIMLGLSKSDKGKHMLAFLSQMLV 571
>ref|XP_002512576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548537|gb|EEF50028.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 739
Score = 327 bits (837), Expect = 5e-87
Identities = 169/378 (44%), Positives = 249/378 (65%), Gaps = 7/378 (1%)
Frame = -1
Query: 1116 MTLNFSSLIISKQIPRWVCFISSLSCITTHATTQNYP-------NSPEFESKTRFXXXXX 958
+T S L +SK+I RWV S+L ++ ++ Q P N+ +F++K
Sbjct: 12 LTAMLSPLTLSKRISRWVNLNSALFSVSCTSSIQINPEIDQSILNTTDFDAKIHILRNKL 71
Query: 957 XXXXXXLHILDSTKDLNSSVNIFKWATSQKRFYHTADTYFLMILKLGMAGNVQDMEFFCN 778
+L ST D+NS+V IFKWA+ QKRF HT+DTYF +ILKLG+AGN+++ME FC
Sbjct: 72 YPDSLIK-VLQSTSDINSAVKIFKWASLQKRFNHTSDTYFWIILKLGLAGNLKEMEGFCQ 130
Query: 777 EMVKDKCPHAEEAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLVED 598
VKD C E A L+ SFV++ R EA+ +L + LG +KP SI++ N++L LVED
Sbjct: 131 NWVKDGCSGVEHAVFSLIASFVRHHRLNEAICILVNLCLGGYKP-SINVFNMILGALVED 189
Query: 597 QRDLETVLFAYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRT 418
++ + V+F YKE+VKAG+ P +DTLN+L+EVL + +++SALDQYRRMN+KGC NSRT
Sbjct: 190 KKGFKEVVFVYKEMVKAGVAPTIDTLNHLMEVLFDTGRVDSALDQYRRMNKKGCSRNSRT 249
Query: 417 FEILICGLCKRNRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKMMR 238
F+I+I GL N+V ESI +L EM + C P+L+F ++P LC+ +KS+E +RL++MMR
Sbjct: 250 FQIVIKGLIVNNQVDESIAILHEMLNIGCLPELSFYTCIIPELCREHKSEEAIRLFRMMR 309
Query: 237 DSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSKFS 58
S + +S++Y LI C C+NL LDDA+ L E+M++S + P + +D+V C+L K +
Sbjct: 310 ASKFVPNSVIYGALIQCFCKNLQLDDAVNLLEEMVESCLTPDNDVVIDVVIAFCRLGKTN 369
Query: 57 NASNLLEENLVTEVIPHN 4
A+ LE+ V E P+N
Sbjct: 370 EAAKFLEDINVLETSPYN 387
Score = 68.6 bits (166), Expect = 3e-09
Identities = 61/251 (24%), Positives = 109/251 (43%)
Frame = -1
Query: 777 EMVKDKCPHAEEAFTELVDSFVKNRRFKEALRVLETMNLGKFKPPSIHICNVMLRTLVED 598
EMV+ + ++V +F + + EA + LE +N+ + P N +L +
Sbjct: 342 EMVESCLTPDNDVVIDVVIAFCRLGKTNEAAKFLEDINVLETSP-----YNTLLGACCDA 396
Query: 597 QRDLETVLFAYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRT 418
+ +E K ++ + + D+ N LI LCE + A + RM VPN T
Sbjct: 397 GKFIEAKGLLEKMSERS--LADCDSWNILIRCLCEKAAIRKASELLGRMIISSLVPNRAT 454
Query: 417 FEILICGLCKRNRVGESIMVLSEMFKLECGPDLNFCDSVLPLLCKANKSDEVLRLYKMMR 238
+ L+ G C+ N+ +++ + ++ D ++ LC+A K E ++ M
Sbjct: 455 YSALVLGHCRLNKCEDALQLFLQLCTKCWILDYVSYSELIEGLCEAGKHLEATEVFHYMF 514
Query: 237 DSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEDMLKSGVAPLVSIYVDIVNGLCKLSKFS 58
+G L L + LI +CE ++D A+ L + G+ + Y I+ GL K K
Sbjct: 515 MNGCLPQYLSFSKLIKGICEKGMVDKAVKLQQMAHDFGMCCANATYNSIMLGLSKSDKGR 574
Query: 57 NASNLLEENLV 25
N L + LV
Sbjct: 575 NVLVFLSQMLV 585