BLASTX nr result

ID: Coptis23_contig00012172 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012172
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157192.1| PREDICTED: uncharacterized protein LOC101224...   136   2e-30
ref|XP_004140766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   133   1e-29
ref|XP_002513669.1| conserved hypothetical protein [Ricinus comm...   130   1e-28
gb|ACJ84898.1| unknown [Medicago truncatula] gi|388514313|gb|AFK...   126   2e-27
ref|XP_002271267.1| PREDICTED: uncharacterized protein LOC100249...   125   5e-27

>ref|XP_004157192.1| PREDICTED: uncharacterized protein LOC101224685 [Cucumis sativus]
          Length = 291

 Score =  136 bits (343), Expect = 2e-30
 Identities = 66/121 (54%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   KFSIKVDQDGDTCPVWNETLVIPLYSPIEDSTLSIDIIHAYAA-EDVKPLIGSARIPINE 184
           K S KVD  GDT P W+ETLVIP +S IEDSTL ID++H   A ED KPLIGSAR+P+ E
Sbjct: 40  KSSTKVDNQGDTSPFWDETLVIPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAE 99

Query: 185 IVNDVGIGEWAERSLKLKRPSGRPHGKLNVNILVRRPRYRAXXXXXXXXXXXXXXXTSRD 364
           +++DVG+GE ++R+L+LKRPSGRP GK+ V + VR PRYR+               ++RD
Sbjct: 100 LIDDVGLGESSQRTLQLKRPSGRPQGKIEVKVTVREPRYRSSDSYYTPPYGVPPPGSARD 159

Query: 365 Y 367
           Y
Sbjct: 160 Y 160


>ref|XP_004140766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101213996 [Cucumis sativus]
          Length = 211

 Score =  133 bits (335), Expect = 1e-29
 Identities = 62/101 (61%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +2

Query: 8   KFSIKVDQDGDTCPVWNETLVIPLYSPIEDSTLSIDIIHAYAAE-DVKPLIGSARIPINE 184
           K S KVD  GDT P W+ETLVIP +S IEDSTL ID++H   A+ D KPLIGSAR+P+ E
Sbjct: 40  KSSTKVDNQGDTSPFWDETLVIPFFSSIEDSTLHIDVVHVVGADXDTKPLIGSARLPLAE 99

Query: 185 IVNDVGIGEWAERSLKLKRPSGRPHGKLNVNILVRRPRYRA 307
           +++DVG+GE ++R+L+LKRPSGRP GK+ V + VR PRYR+
Sbjct: 100 LIDDVGLGESSQRTLQLKRPSGRPQGKIEVKVTVREPRYRS 140


>ref|XP_002513669.1| conserved hypothetical protein [Ricinus communis]
           gi|223547577|gb|EEF49072.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 265

 Score =  130 bits (326), Expect = 1e-28
 Identities = 60/100 (60%), Positives = 81/100 (81%), Gaps = 1/100 (1%)
 Frame = +2

Query: 5   SKFSIKVDQDGDTCPVWNETLVIPLY-SPIEDSTLSIDIIHAYAAEDVKPLIGSARIPIN 181
           SK+S +VD++GDTCP W++ LVIPL   PIED TL ID++HA A ED KPLIGSAR+ ++
Sbjct: 39  SKWSTRVDEEGDTCPFWDQILVIPLPPGPIEDHTLYIDVVHANAEEDTKPLIGSARLKLS 98

Query: 182 EIVNDVGIGEWAERSLKLKRPSGRPHGKLNVNILVRRPRY 301
           E+++DVGIG+   R L+LKRPSGRP GK++VN+ +R+P Y
Sbjct: 99  EVLDDVGIGQRLNRILQLKRPSGRPQGKMDVNVTIRQPSY 138


>gb|ACJ84898.1| unknown [Medicago truncatula] gi|388514313|gb|AFK45218.1| unknown
           [Medicago truncatula]
          Length = 301

 Score =  126 bits (317), Expect = 2e-27
 Identities = 62/101 (61%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +2

Query: 5   SKFSIKVDQDGDTCPVWNETLVIPLY-SPIEDSTLSIDIIHAYAAEDVKPLIGSARIPIN 181
           +KFS KVD++GDT   W++TL+IPL   PIED TL IDI+HA +  D KPLIGSAR+ + 
Sbjct: 39  NKFSTKVDENGDTEANWDQTLIIPLPPQPIEDLTLYIDIVHAGSEPDTKPLIGSARLKLV 98

Query: 182 EIVNDVGIGEWAERSLKLKRPSGRPHGKLNVNILVRRPRYR 304
           E+++DVGIGE A RSL LKRPSGRPHGK++V +++R P YR
Sbjct: 99  EVLDDVGIGERASRSLTLKRPSGRPHGKVDVKVIIREPGYR 139


>ref|XP_002271267.1| PREDICTED: uncharacterized protein LOC100249100 [Vitis vinifera]
          Length = 286

 Score =  125 bits (313), Expect = 5e-27
 Identities = 60/103 (58%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
 Frame = +2

Query: 5   SKFSIKVDQDGDTCPVWNETLVIPLYSPIEDSTLSIDIIHAYA--AEDVKPLIGSARIPI 178
           +K S KVD DGDT P WNETL+IP+ S IEDSTL +D++H  A   +D KP++GSAR+ +
Sbjct: 39  AKLSTKVDNDGDTFPCWNETLLIPVPSRIEDSTLYLDVVHLKADDEDDTKPVVGSARLFL 98

Query: 179 NEIVNDVGIGEWAERSLKLKRPSGRPHGKLNVNILVRRPRYRA 307
            ++V+DVG G  A R+L+L+RPSGRPHGK+ V + VR PRYRA
Sbjct: 99  RDVVDDVGFGAQAIRTLELRRPSGRPHGKVEVKVSVRDPRYRA 141


Top