BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00012041
         (932 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514479.1| nucleic acid binding protein, putative [Rici...   131   3e-28
ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containin...   126   8e-27
emb|CBI38961.3| unnamed protein product [Vitis vinifera]              126   8e-27
gb|AFK43143.1| unknown [Medicago truncatula]                          117   4e-24
ref|XP_003607452.1| Zinc finger CCCH domain-containing protein [...   117   4e-24

>ref|XP_002514479.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223546378|gb|EEF47879.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 282

 Score =  131 bits (329), Expect = 3e-28
 Identities = 67/144 (46%), Positives = 89/144 (61%), Gaps = 19/144 (13%)
 Frame = +2

Query: 8   NQERVENHTCTDDIELCKKQVFEDMQCERPLWRLTCYGHCKHGPCDIGGDVSYEELRANA 187
           NQ +  NH CTD  + CK+Q+ ED Q E+PLW+LTCYGH K+GPCDIGGDVSYEELRA A
Sbjct: 92  NQPQPANHKCTDP-DSCKRQIAEDFQNEKPLWKLTCYGHSKNGPCDIGGDVSYEELRALA 150

Query: 188 YDDVEMGLSMSAVVGKEKNIQKSKSIQFENFLNCVSAAS-------------------ST 310
           YD+ + GL++ ++V +E+N+  SK I+FEN L    AA                     +
Sbjct: 151 YDEAKHGLTLQSIVERERNLLSSKLIEFENLLRNPYAAPPKSAFSQSPFPGVTPNAILPS 210

Query: 311 AQNKVTPTVSTFRELGLVTNQAVK 382
            QN   P+VS+F +LG   N A +
Sbjct: 211 GQNNPPPSVSSFSQLGASLNMATR 234


>ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containing protein 16-like
           [Vitis vinifera]
          Length = 383

 Score =  126 bits (316), Expect = 8e-27
 Identities = 67/159 (42%), Positives = 88/159 (55%), Gaps = 18/159 (11%)
 Frame = +2

Query: 8   NQERVENHTCTDDIELCKKQVFEDMQCERPLWRLTCYGHCKHGPCDIGGDVSYEELRANA 187
           NQ +  NH CTD  E CK+Q+ ED + ERP+W+LTCYGHCK  PCDI GD+SYEELR  A
Sbjct: 97  NQVQPANHKCTDP-ESCKRQIVEDFEHERPIWKLTCYGHCKSAPCDIVGDISYEELRLAA 155

Query: 188 YDDVEMGLSMSAVVGKEKNIQKSKSIQFENFLNCVSAA------------------SSTA 313
           YDD   GLS+ ++V +E+++  SK I+F++ L    AA                  S TA
Sbjct: 156 YDDAGRGLSLQSIVERERSLLNSKLIEFDSLLRKPYAAPPNSTLAIQSPAPNPDASSLTA 215

Query: 314 QNKVTPTVSTFRELGLVTNQAVKETAPLASSNTSTQKES 430
           QN   P+ S+F +L    N          S+N   Q  S
Sbjct: 216 QNNTPPSASSFSQLSTSPNMGFGTRPSTPSNNAFGQSNS 254


>emb|CBI38961.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  126 bits (316), Expect = 8e-27
 Identities = 67/159 (42%), Positives = 88/159 (55%), Gaps = 18/159 (11%)
 Frame = +2

Query: 8   NQERVENHTCTDDIELCKKQVFEDMQCERPLWRLTCYGHCKHGPCDIGGDVSYEELRANA 187
           NQ +  NH CTD  E CK+Q+ ED + ERP+W+LTCYGHCK  PCDI GD+SYEELR  A
Sbjct: 108 NQVQPANHKCTDP-ESCKRQIVEDFEHERPIWKLTCYGHCKSAPCDIVGDISYEELRLAA 166

Query: 188 YDDVEMGLSMSAVVGKEKNIQKSKSIQFENFLNCVSAA------------------SSTA 313
           YDD   GLS+ ++V +E+++  SK I+F++ L    AA                  S TA
Sbjct: 167 YDDAGRGLSLQSIVERERSLLNSKLIEFDSLLRKPYAAPPNSTLAIQSPAPNPDASSLTA 226

Query: 314 QNKVTPTVSTFRELGLVTNQAVKETAPLASSNTSTQKES 430
           QN   P+ S+F +L    N          S+N   Q  S
Sbjct: 227 QNNTPPSASSFSQLSTSPNMGFGTRPSTPSNNAFGQSNS 265


>gb|AFK43143.1| unknown [Medicago truncatula]
          Length = 393

 Score =  117 bits (293), Expect = 4e-24
 Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 16/152 (10%)
 Frame = +2

Query: 8   NQERVENHTCTDDIELCKKQVFEDMQCERPLWRLTCYGHCKHGPCDIGGDVSYEELRANA 187
           N  +  NH CTD  E CK+Q+ ED Q E+PLW LTCYGHCK  PCDI GD+SYEELRA A
Sbjct: 113 NNSQTVNHKCTDP-EACKRQIVEDFQQEKPLWILTCYGHCKGAPCDIVGDISYEELRAAA 171

Query: 188 YDDVEMGLSMSAVVGKEKNIQKSKSIQFENF------------LNCVSAASSTAQ-NKVT 328
           Y+D + G+S+  +V KEKNI +SK ++F               LN  +  S+ A  N   
Sbjct: 172 YEDNKKGMSLPQIVEKEKNILQSKLVEFNKLLSEPYKMPLTSSLNIQNFQSNGANVNAFQ 231

Query: 329 PTVSTFRELGLVTN---QAVKETAPLASSNTS 415
           P    F+  G   N    A +   PL+ S+ S
Sbjct: 232 PATQNFQSNGANANAFQPATQNNGPLSVSSFS 263


>ref|XP_003607452.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355508507|gb|AES89649.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 393

 Score =  117 bits (293), Expect = 4e-24
 Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 16/152 (10%)
 Frame = +2

Query: 8   NQERVENHTCTDDIELCKKQVFEDMQCERPLWRLTCYGHCKHGPCDIGGDVSYEELRANA 187
           N  +  NH CTD  E CK+Q+ ED Q E+PLW LTCYGHCK  PCDI GD+SYEELRA A
Sbjct: 113 NNSQTVNHKCTDP-EACKRQIVEDFQQEKPLWILTCYGHCKGAPCDIVGDISYEELRAAA 171

Query: 188 YDDVEMGLSMSAVVGKEKNIQKSKSIQFENF------------LNCVSAASSTAQ-NKVT 328
           Y+D + G+S+  +V KEKNI +SK ++F               LN  +  S+ A  N   
Sbjct: 172 YEDNKKGMSLPQIVEKEKNILQSKLVEFNKLLSEPYKMPLTSSLNIQNFQSNGANVNAFQ 231

Query: 329 PTVSTFRELGLVTN---QAVKETAPLASSNTS 415
           P    F+  G   N    A +   PL+ S+ S
Sbjct: 232 PATQNFQSNGANANAFQPATQNNGPLSVSSFS 263