BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011992
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chl...   160   8e-38
ref|XP_002884230.1| hypothetical protein ARALYDRAFT_900469 [Arab...   160   1e-37
ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, ch...   159   2e-37
gb|ABV24460.1| chloroplast-localized protein [Nicotiana benthami...   159   2e-37
gb|AAM64943.1| unknown [Arabidopsis thaliana] gi|58761181|gb|AAW...   157   7e-37

>ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis
           vinifera]
          Length = 299

 Score =  160 bits (406), Expect = 8e-38
 Identities = 92/169 (54%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
 Frame = +1

Query: 25  MASISSIPFTVSSQVSERKXXXXXXXXXXK-FYRFRFGVKFIXXXXXXXXXXXXX-MVVH 198
           MA+++S+ F+   Q SERK            F  FRF   F               MVV 
Sbjct: 1   MAAVTSLSFSALGQSSERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVVQ 60

Query: 199 CMSSVTXXXXXXXXXXXXXXXXXDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHL 378
           CMSSVT                 DVP VSETKMNFLK Y RPIPSIYNT+LQEL+VQQHL
Sbjct: 61  CMSSVT-----------------DVPTVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHL 103

Query: 379 MRYKKTYCYDAVFALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDP 525
           MRYK+TY YDAVFALGFVTVYD+LM+GY S+EDR+ IF+ YI+AL+EDP
Sbjct: 104 MRYKRTYRYDAVFALGFVTVYDQLMDGYPSDEDRDIIFQVYIKALREDP 152


>ref|XP_002884230.1| hypothetical protein ARALYDRAFT_900469 [Arabidopsis lyrata subsp.
           lyrata] gi|297330070|gb|EFH60489.1| hypothetical protein
           ARALYDRAFT_900469 [Arabidopsis lyrata subsp. lyrata]
          Length = 298

 Score =  160 bits (404), Expect = 1e-37
 Identities = 81/112 (72%), Positives = 89/112 (79%)
 Frame = +1

Query: 190 VVHCMSSVTXXXXXXXXXXXXXXXXXDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQ 369
           ++HCMS+VT                 DVPPVSETK NFLKAY RPIPSIYNTVLQELIVQ
Sbjct: 53  LIHCMSTVT-----------------DVPPVSETKSNFLKAYKRPIPSIYNTVLQELIVQ 95

Query: 370 QHLMRYKKTYCYDAVFALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDP 525
           QHLMRYKKTY YD VFALGFVTVYD+LMEGY S++DR+AIFKAYI+AL EDP
Sbjct: 96  QHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDP 147


>ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like
           [Cucumis sativus] gi|449493105|ref|XP_004159194.1|
           PREDICTED: protein THYLAKOID FORMATION 1,
           chloroplastic-like [Cucumis sativus]
          Length = 298

 Score =  159 bits (403), Expect = 2e-37
 Identities = 91/169 (53%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
 Frame = +1

Query: 25  MASISSIPFTVSSQVSERKXXXXXXXXXXK-FYRFRFGVK-FIXXXXXXXXXXXXXMVVH 198
           MA+++SI F+  +Q S+R+            F+ F F    F              MV+H
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 199 CMSSVTXXXXXXXXXXXXXXXXXDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQHL 378
           CMS+ T                 DV  V+ETK+NFLKAY RPIPSIYNTVLQELIVQQHL
Sbjct: 61  CMSAGT-----------------DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHL 103

Query: 379 MRYKKTYCYDAVFALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDP 525
           MRYK+TY YD VFALGFVTVYD+LMEGY S+EDREAIF+AYI+AL EDP
Sbjct: 104 MRYKRTYRYDPVFALGFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDP 152


>gb|ABV24460.1| chloroplast-localized protein [Nicotiana benthamiana]
          Length = 295

 Score =  159 bits (403), Expect = 2e-37
 Identities = 89/171 (52%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
 Frame = +1

Query: 25  MASISSIPFTVSSQVSERKXXXXXXXXXXKFYRFRFGVKF----IXXXXXXXXXXXXXMV 192
           MA+++S+ F+  +Q +ERK           F RFR  V F    +              V
Sbjct: 1   MAAVTSVSFSAIAQSAERKSSVSPSRSVDTF-RFRSNVSFDCFNVRSSNSSFSRSTSRFV 59

Query: 193 VHCMSSVTXXXXXXXXXXXXXXXXXDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQQ 372
           VHCMS+                   D+P V+ETKMNFLKAY RPIP++YNTVLQELIVQQ
Sbjct: 60  VHCMST-------------------DLPTVAETKMNFLKAYKRPIPTVYNTVLQELIVQQ 100

Query: 373 HLMRYKKTYCYDAVFALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDP 525
           HL++YKK+Y YD VFALGFVTVYD+LMEGY S EDR+AIFKAYI+AL EDP
Sbjct: 101 HLIKYKKSYRYDPVFALGFVTVYDQLMEGYPSEEDRDAIFKAYIEALNEDP 151


>gb|AAM64943.1| unknown [Arabidopsis thaliana] gi|58761181|gb|AAW82331.1|
           chloroplast thylakoid formation 1 [Arabidopsis thaliana]
          Length = 300

 Score =  157 bits (398), Expect = 7e-37
 Identities = 80/112 (71%), Positives = 88/112 (78%)
 Frame = +1

Query: 190 VVHCMSSVTXXXXXXXXXXXXXXXXXDVPPVSETKMNFLKAYSRPIPSIYNTVLQELIVQ 369
           ++HCMS+VT                 DVPPVSETK  FLKAY RPIPSIYNTVLQELIVQ
Sbjct: 53  LIHCMSNVTA----------------DVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQ 96

Query: 370 QHLMRYKKTYCYDAVFALGFVTVYDKLMEGYTSNEDREAIFKAYIQALKEDP 525
           QHLMRYKKTY YD VFALGFVTVYD+LMEGY S++DR+AIFKAYI+AL EDP
Sbjct: 97  QHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDP 148