BLASTX nr result
ID: Coptis23_contig00011957
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00011957
(1719 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_974885.1| protein OSB3 [Arabidopsis thaliana] gi|33200777... 283 1e-73
ref|NP_568639.1| protein OSB3 [Arabidopsis thaliana] gi|75328911... 283 1e-73
gb|AAM61481.1| unknown [Arabidopsis thaliana] 282 2e-73
ref|XP_002863546.1| hypothetical protein ARALYDRAFT_494502 [Arab... 280 1e-72
ref|XP_003620948.1| Protein OSB3 [Medicago truncatula] gi|355495... 248 3e-63
>ref|NP_974885.1| protein OSB3 [Arabidopsis thaliana] gi|332007778|gb|AED95161.1|
protein OSB3 [Arabidopsis thaliana]
Length = 442
Score = 283 bits (724), Expect = 1e-73
Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 31/379 (8%)
Frame = -2
Query: 1373 PSEIPWQGKVANVVNLIGRVSMPVQFQVSADGKSWAGTILTQESSSSDSLLWIPIIFEGD 1194
P +I ++ +++N +NLIG V PVQF +DGK WAGT+++Q S S S WIPIIFEGD
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 1193 LAHIAACHLKEKDFVHVSGQLAGDPPQFTMEKSRSSSIQVMVNGINFVEESPQRKESHAS 1014
LA IA H+K++D +HVSG+L D P + S+ S++QVMV +NFV+ + ++ S
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQ-SNVQVMVQNLNFVQAATSTTKT-IS 188
Query: 1013 YKQNEQAXXXXXXXXXXXSMPITEDKKDSTTTEHLWTDLLENPHEWWDNRLNKNN--LKG 840
+ E I E+ T + W L+ENP EW D+R NK N +K
Sbjct: 189 PPEKEVTSIKKKPARSKKVKVIDEE------TSNSWKHLIENPKEWLDHRGNKANGLVKP 242
Query: 839 A--DFKHKVKGEMLWLDESTPGWVVSKLESLNFINKTVQKSQKSVNGVKDRESVECSWRD 666
DFK KV G LWL + P W + KLE L F + V K +N +KD E SW+D
Sbjct: 243 GHPDFKMKVGGLSLWL-STAPDWALLKLEELKF-DVLVPKGNIKLNQLKD--IGEESWKD 298
Query: 665 LTYNPNRWRDHRKEKLNGQVNPKFPDFKHKDSGQALWISSAPKWVLSNLDALQFD----- 501
L NP++W D+R +K N K+PDFKHK++G+ALW++++P WVLS L L+ +
Sbjct: 299 LVQNPDKWLDNRSDK----TNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLKKNQERPF 354
Query: 500 ----------------------NKENSWKDLVENPNKWWDNRFDKLNQRAPDFKHKETGE 387
+E WK+LVENP+KWWDNR DK N + PDFKHKETGE
Sbjct: 355 MSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGE 414
Query: 386 GLWLSGSPDWVMPKLPPVK 330
LW+ SP W + KLPP+K
Sbjct: 415 ALWIGDSPTWALSKLPPLK 433
>ref|NP_568639.1| protein OSB3 [Arabidopsis thaliana]
gi|75328911|sp|Q8GWJ4.1|OSB3_ARATH RecName: Full=Protein
OSB3, chloroplastic/mitochondrial; AltName:
Full=Organellar single-stranded DNA-binding protein 3;
Flags: Precursor gi|26452626|dbj|BAC43396.1| unknown
protein [Arabidopsis thaliana] gi|28973013|gb|AAO63831.1|
unknown protein [Arabidopsis thaliana]
gi|30102734|gb|AAP21285.1| At5g44785 [Arabidopsis
thaliana] gi|110743279|dbj|BAE99530.1| hypothetical
protein [Arabidopsis thaliana]
gi|332007779|gb|AED95162.1| protein OSB3 [Arabidopsis
thaliana]
Length = 440
Score = 283 bits (724), Expect = 1e-73
Identities = 160/379 (42%), Positives = 218/379 (57%), Gaps = 31/379 (8%)
Frame = -2
Query: 1373 PSEIPWQGKVANVVNLIGRVSMPVQFQVSADGKSWAGTILTQESSSSDSLLWIPIIFEGD 1194
P +I ++ +++N +NLIG V PVQF +DGK WAGT+++Q S S S WIPIIFEGD
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 1193 LAHIAACHLKEKDFVHVSGQLAGDPPQFTMEKSRSSSIQVMVNGINFVEESPQRKESHAS 1014
LA IA H+K++D +HVSG+L D P + S+ S++QVMV +NFV+ + ++ S
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQ-SNVQVMVQNLNFVQAATSTTKT-IS 188
Query: 1013 YKQNEQAXXXXXXXXXXXSMPITEDKKDSTTTEHLWTDLLENPHEWWDNRLNKNN--LKG 840
+ E I E+ T + W L+ENP EW D+R NK N +K
Sbjct: 189 PPEKEVTSIKKKPARSKKVKVIDEE------TSNSWKHLIENPKEWLDHRGNKANGLVKP 242
Query: 839 A--DFKHKVKGEMLWLDESTPGWVVSKLESLNFINKTVQKSQKSVNGVKDRESVECSWRD 666
DFK KV G LWL + P W + KLE L F + V K +N +K E SW+D
Sbjct: 243 GHPDFKMKVGGLSLWL-STAPDWALLKLEELKF-DVLVPKGNIKLNQLKGEE----SWKD 296
Query: 665 LTYNPNRWRDHRKEKLNGQVNPKFPDFKHKDSGQALWISSAPKWVLSNLDALQFD----- 501
L NP++W D+R +K N K+PDFKHK++G+ALW++++P WVLS L L+ +
Sbjct: 297 LVQNPDKWLDNRSDK----TNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLKKNQERPF 352
Query: 500 ----------------------NKENSWKDLVENPNKWWDNRFDKLNQRAPDFKHKETGE 387
+E WK+LVENP+KWWDNR DK N + PDFKHKETGE
Sbjct: 353 MSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGE 412
Query: 386 GLWLSGSPDWVMPKLPPVK 330
LW+ SP W + KLPP+K
Sbjct: 413 ALWIGDSPTWALSKLPPLK 431
>gb|AAM61481.1| unknown [Arabidopsis thaliana]
Length = 440
Score = 282 bits (722), Expect = 2e-73
Identities = 160/379 (42%), Positives = 217/379 (57%), Gaps = 31/379 (8%)
Frame = -2
Query: 1373 PSEIPWQGKVANVVNLIGRVSMPVQFQVSADGKSWAGTILTQESSSSDSLLWIPIIFEGD 1194
P I ++ +++N +NLIG V PVQF +DGK WAGT+++Q S S S WIPIIFEGD
Sbjct: 71 PKTIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 1193 LAHIAACHLKEKDFVHVSGQLAGDPPQFTMEKSRSSSIQVMVNGINFVEESPQRKESHAS 1014
LA IA H+K++D +HVSG+L D P + S+ S++QVMV +NFV+ + ++ S
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQ-SNVQVMVQNLNFVQAATSTTKT-IS 188
Query: 1013 YKQNEQAXXXXXXXXXXXSMPITEDKKDSTTTEHLWTDLLENPHEWWDNRLNKNN--LKG 840
+ E I E+ T + W L+ENP EW D+R NK N +K
Sbjct: 189 PPEKEVTSIKKKPARSKKVKVIDEE------TSNSWKHLIENPKEWLDHRGNKANGLVKP 242
Query: 839 A--DFKHKVKGEMLWLDESTPGWVVSKLESLNFINKTVQKSQKSVNGVKDRESVECSWRD 666
DFK KV G LWL + P W + KLE L F + V K +N +K E SW+D
Sbjct: 243 GHPDFKMKVGGLSLWL-STAPDWALLKLEELKF-DVLVPKGNIKLNQLKGEE----SWKD 296
Query: 665 LTYNPNRWRDHRKEKLNGQVNPKFPDFKHKDSGQALWISSAPKWVLSNLDALQFD----- 501
L NP++W D+R +K N K+PDFKHK++G+ALW++++P WVLS L L+ +
Sbjct: 297 LVQNPDKWLDNRSDK----TNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLKKNQERPL 352
Query: 500 ----------------------NKENSWKDLVENPNKWWDNRFDKLNQRAPDFKHKETGE 387
+E WK+LVENP+KWWDNR DK N + PDFKHKETGE
Sbjct: 353 MSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGE 412
Query: 386 GLWLSGSPDWVMPKLPPVK 330
LW+ SP W + KLPP+K
Sbjct: 413 ALWIGDSPTWALSKLPPLK 431
>ref|XP_002863546.1| hypothetical protein ARALYDRAFT_494502 [Arabidopsis lyrata subsp.
lyrata] gi|297309381|gb|EFH39805.1| hypothetical protein
ARALYDRAFT_494502 [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 280 bits (715), Expect = 1e-72
Identities = 163/388 (42%), Positives = 223/388 (57%), Gaps = 40/388 (10%)
Frame = -2
Query: 1373 PSEIPWQGKVANVVNLIGRVSMPVQFQVSADGKSWAGTILTQESSSSDSLLWIPIIFEGD 1194
P I ++ +++N +NLIG V PVQF +DGK WAGT+++Q S S S WIPIIFEGD
Sbjct: 71 PKRIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 1193 LAHIAACHLKEKDFVHVSGQLAGDPPQFTMEKSRSSSIQVMVNGINFVEE--------SP 1038
LA IA H+K++D +HVSG+L D P + S+ S++QVMV +NFV+ SP
Sbjct: 131 LAQIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQ-SNVQVMVQNLNFVQAATSLTKTISP 189
Query: 1037 QRKESHASYKQNEQAXXXXXXXXXXXSMPITEDKKDSTTTEHLWTDLLENPHEWWDNRLN 858
KE ++ K+ ++ + K T + W L+ENP EW D+R N
Sbjct: 190 PEKEVISTKKRPVRS---------------KKVKVIDEETSNSWKHLIENPKEWLDHRGN 234
Query: 857 KNN--LKGA--DFKHKVKGEMLWLDESTPGWVVSKLESLNFINKTVQKSQKSVNGVKDRE 690
K N +K DFK KV G LWL + P W + KL+ L F + V K +N +K E
Sbjct: 235 KANGLVKPGHPDFKMKVGGLSLWL-STAPDWALPKLKELEF-DVLVPKGNIKLNQLKGEE 292
Query: 689 SVECSWRDLTYNPNRWRDHRKEKLNGQVNPKFPDFKHKDSGQALWISSAPKWVLSNLDAL 510
SW+DL NP++W D+R +K N K+PDFKHK++G+ALW++++P WVLS L L
Sbjct: 293 ----SWKDLVQNPDKWLDNRLDK----TNVKYPDFKHKETGEALWMTNSPIWVLSKLPPL 344
Query: 509 QFD---------------------------NKENSWKDLVENPNKWWDNRFDKLNQRAPD 411
+ + +E SWK+LVENP+KWWDNR DK N +APD
Sbjct: 345 KKNQERPLMSNTVPQLELDVVVPNGNLTQLKREESWKNLVENPSKWWDNRLDKRNPKAPD 404
Query: 410 FKHKETGEGLWL-SGSPDWVMPKLPPVK 330
FKHKETGE LW+ + SP W + KLPP+K
Sbjct: 405 FKHKETGEVLWINNNSPTWALSKLPPLK 432
>ref|XP_003620948.1| Protein OSB3 [Medicago truncatula] gi|355495963|gb|AES77166.1|
Protein OSB3 [Medicago truncatula]
Length = 491
Score = 248 bits (634), Expect = 3e-63
Identities = 144/377 (38%), Positives = 192/377 (50%), Gaps = 20/377 (5%)
Frame = -2
Query: 1376 RPSEIPWQGKVANVVNLIGRVSMPVQFQVSADGKSWAGTILTQESSSSDSLLWIPIIFEG 1197
+P+EIP+Q K+AN VNLIG V+ P+ FQ S DG A T++T+ L IP++F G
Sbjct: 67 KPTEIPFQPKLANSVNLIGTVNKPIHFQTSTDGNPSAATVITRLGHDPSQFL-IPLVFHG 125
Query: 1196 DLAHIAACHLKEKDFVHVSGQLAGDPPQFTMEKSRSSSIQVMVNGINFVEESPQ-RKESH 1020
DLA A HLK D VHV GQL+ + Q ++K + QV V +NFVE P+ +K S
Sbjct: 126 DLALTAQFHLKLNDVVHVEGQLSTEDDQIKLDKPQQYQFQVKVQSLNFVEGYPRVKKASL 185
Query: 1019 ASYKQNEQAXXXXXXXXXXXSMPITEDKKDSTTTEHLWTDLLENPHEWWDNRLNKNNLKG 840
S ++++ I +K + T W D++ P +W K + K
Sbjct: 186 TSKEKSDIEDESENDEIKSSEKDIHSEKTEQHDTRKSWRDVINKPSQWKAVHSPKESPKN 245
Query: 839 ADFKHKVKGEMLWLDESTPGWVVSKLESLNFINKTVQKSQKSVNGVKDRESVECSWRDLT 660
ADF+ K +GE+ PG Q + + K S+ +W DL
Sbjct: 246 ADFESKTEGEL------QPGL-----------------KQSTTSAKKYTGSLSSTWGDLL 282
Query: 659 YNPNRWRDHRKEKLNGQVNPKFPDFKHKDSGQALWISSAPKWVLSNLDALQFDNK----- 495
+P +W D R K NG VNPK+PDFK KD ++W+ A K VLS L L+FD
Sbjct: 283 DDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKASKSVLSRLKELEFDTPPVKPK 342
Query: 494 -------ENSWKDLVENPNKWWDNRFDKLNQRAPDFKHKETGEGLWLSGSPDWVMPKL-- 342
+ SW DL++NP KWWDNR DK RAPDFKHK+TG GLWL SP WV +L
Sbjct: 343 QTKDSKGDESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGVGLWLRDSPSWVSSRLKE 402
Query: 341 -----PPVKSKDVAGSK 306
VKSK SK
Sbjct: 403 LEVESTSVKSKQAKDSK 419
Score = 185 bits (469), Expect = 4e-44
Identities = 97/225 (43%), Positives = 129/225 (57%), Gaps = 17/225 (7%)
Frame = -2
Query: 947 TEDKKDSTTTEHLWTDLLENPHEWWDNRLNKNN----LKGADFKHKVKGEMLWLDESTPG 780
T KK + + W DLL++P +WWD R +K N K DFK K +WLD+++
Sbjct: 265 TSAKKYTGSLSSTWGDLLDDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKASKS 324
Query: 779 WVVSKLESLNFINKTVQKSQKSVNGVKDRESVECSWRDLTYNPNRWRDHRKEKLNGQVNP 600
V+S+L+ L F V+ Q KD + E SW DL NP +W D+R +K +
Sbjct: 325 -VLSRLKELEFDTPPVKPKQ-----TKDSKGDE-SWNDLLQNPAKWWDNRVDKKYARA-- 375
Query: 599 KFPDFKHKDSGQALWISSAPKWVLSNLDALQFDN-------------KENSWKDLVENPN 459
PDFKHKD+G LW+ +P WV S L L+ ++ + SW DL++NP
Sbjct: 376 --PDFKHKDTGVGLWLRDSPSWVSSRLKELEVESTSVKSKQAKDSKGSDESWNDLLQNPA 433
Query: 458 KWWDNRFDKLNQRAPDFKHKETGEGLWLSGSPDWVMPKLPPVKSK 324
KWWDNR DK N + PDFKHK+TGE LWL GSP WV+PKLPP+K K
Sbjct: 434 KWWDNRLDKKNPKGPDFKHKDTGEALWLRGSPSWVLPKLPPLKPK 478