BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011808
         (860 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_193700.2| Mitochondrial transcription termination factor ...   157   2e-36
emb|CAA19682.1| putative protein [Arabidopsis thaliana] gi|72687...   157   2e-36
ref|XP_002275246.1| PREDICTED: uncharacterized protein LOC100241...   156   5e-36
ref|XP_002869971.1| hypothetical protein ARALYDRAFT_914700 [Arab...   154   2e-35
ref|XP_002530355.1| conserved hypothetical protein [Ricinus comm...   154   3e-35

>ref|NP_193700.2| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana] gi|332658810|gb|AEE84210.1|
           Mitochondrial transcription termination factor family
           protein [Arabidopsis thaliana]
          Length = 575

 Score =  157 bits (398), Expect = 2e-36
 Identities = 65/153 (42%), Positives = 110/153 (71%)
 Frame = -1

Query: 461 SLMQKKEFLLKDDGLLLENYHALCNYGVPRGMIGKIYREAKEVFSYDCGVLRSTLYSYKD 282
           + + +K   L DDG++ EN+HALCNYG+PRG IG++Y+EA+E+F Y+ G+L   L  Y++
Sbjct: 146 TFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYEN 205

Query: 281 MGLSQTSVIKVVVSSPSLLIGGVNGDFRKVLDMFRSLEIDFEWIEECISDNDTYDWSQVL 102
           +GLS+ +VIK+V S P LL+GG++ +F  V+D  + L++  +W+   +SD  TY W ++L
Sbjct: 206 LGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLKGLQVGCDWLGRYLSDRKTYSWRRIL 265

Query: 101 GFLNFVCRLDYSKEELRALVKTHPGLLLEGSGR 3
             + F+ ++   +E+L +L+KT+P L++EGSG+
Sbjct: 266 ETIEFLDKVGCKEEKLSSLLKTYPALVIEGSGK 298



 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
 Frame = -1

Query: 860 VKTHPGLLLEGSGRNAFHLVKTLFKLGFTGKEVASLLLRLPQIQVGTFAKNLDRCLSFLM 681
           +KT+P L++EGSG+  + L   LFK G    E+  L +  P++      KN+ + L FL+
Sbjct: 285 LKTYPALVIEGSGKKFYVLFGRLFKAGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDFLI 344

Query: 680 HIEMDSEDIARIVRAHTVMLGTLYLKKANTVQTELSIGSKRLRKIIKGDPYRLKNWALGM 501
            I M+++ I +I+ +H  ++G+  L    T    L++    L KI+K +P RL  +    
Sbjct: 345 AIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVSTT 404

Query: 500 KLEPLRNSAENQSSLMQKKEFLLK------DDGL-------------LLENYHALCNYGV 378
           K    +  +E+    ++K EFLL+       D +             L E +  L   G+
Sbjct: 405 KKRKSKPLSEDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGL 464

Query: 377 PRGMIGKIYREAKEVFSYDCGVLRSTLYSYKDM 279
              ++ +I R A  + +    V+   ++S  ++
Sbjct: 465 NYNVVTEIIRHAPMILNLSKDVIEKKIHSLTEL 497


>emb|CAA19682.1| putative protein [Arabidopsis thaliana] gi|7268761|emb|CAB78967.1|
           putative protein [Arabidopsis thaliana]
          Length = 557

 Score =  157 bits (398), Expect = 2e-36
 Identities = 65/153 (42%), Positives = 110/153 (71%)
 Frame = -1

Query: 461 SLMQKKEFLLKDDGLLLENYHALCNYGVPRGMIGKIYREAKEVFSYDCGVLRSTLYSYKD 282
           + + +K   L DDG++ EN+HALCNYG+PRG IG++Y+EA+E+F Y+ G+L   L  Y++
Sbjct: 146 TFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYEN 205

Query: 281 MGLSQTSVIKVVVSSPSLLIGGVNGDFRKVLDMFRSLEIDFEWIEECISDNDTYDWSQVL 102
           +GLS+ +VIK+V S P LL+GG++ +F  V+D  + L++  +W+   +SD  TY W ++L
Sbjct: 206 LGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLKGLQVGCDWLGRYLSDRKTYSWRRIL 265

Query: 101 GFLNFVCRLDYSKEELRALVKTHPGLLLEGSGR 3
             + F+ ++   +E+L +L+KT+P L++EGSG+
Sbjct: 266 ETIEFLDKVGCKEEKLSSLLKTYPALVIEGSGK 298



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
 Frame = -1

Query: 860 VKTHPGLLLEGSGRNAFHLVKTLFKLGFTGKEVASLLLRLPQIQVGTFAKNLDRCLSFLM 681
           +KT+P L++EGSG+  +                  +L   P++      KN+ + L FL+
Sbjct: 285 LKTYPALVIEGSGKKFY------------------VLFDNPEMLSDKCVKNIQKTLDFLI 326

Query: 680 HIEMDSEDIARIVRAHTVMLGTLYLKKANTVQTELSIGSKRLRKIIKGDPYRLKNWALGM 501
            I M+++ I +I+ +H  ++G+  L    T    L++    L KI+K +P RL  +    
Sbjct: 327 AIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVSTT 386

Query: 500 KLEPLRNSAENQSSLMQKKEFLLK------DDGL-------------LLENYHALCNYGV 378
           K    +  +E+    ++K EFLL+       D +             L E +  L   G+
Sbjct: 387 KKRKSKPLSEDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGL 446

Query: 377 PRGMIGKIYREAKEVFSYDCGVLRSTLYSYKDM 279
              ++ +I R A  + +    V+   ++S  ++
Sbjct: 447 NYNVVTEIIRHAPMILNLSKDVIEKKIHSLTEL 479


>ref|XP_002275246.1| PREDICTED: uncharacterized protein LOC100241837 [Vitis vinifera]
           gi|147864060|emb|CAN83222.1| hypothetical protein
           VITISV_031366 [Vitis vinifera]
           gi|297739852|emb|CBI30034.3| unnamed protein product
           [Vitis vinifera]
          Length = 589

 Score =  156 bits (395), Expect = 5e-36
 Identities = 73/153 (47%), Positives = 108/153 (70%)
 Frame = -1

Query: 464 SSLMQKKEFLLKDDGLLLENYHALCNYGVPRGMIGKIYREAKEVFSYDCGVLRSTLYSYK 285
           ++L+ +    L DD +LLENY+ LCNYG+ R  IGKIY+EA EVF YD G+LR  L +Y 
Sbjct: 157 TNLLPRNLMFLCDDQVLLENYYILCNYGIARNKIGKIYKEAPEVFRYDSGILRLKLQAYL 216

Query: 284 DMGLSQTSVIKVVVSSPSLLIGGVNGDFRKVLDMFRSLEIDFEWIEECISDNDTYDWSQV 105
           ++GLSQ+++IK + SSP LLIG  N DF K ++  +S+ I+  WIE+ +S+ + YDWSQ+
Sbjct: 217 ELGLSQSTMIKAIASSPYLLIGDANMDFVKAMEKLKSVGIESNWIEKHLSEGNYYDWSQM 276

Query: 104 LGFLNFVCRLDYSKEELRALVKTHPGLLLEGSG 6
           +G L    ++ ++ E+L  L++ HPG+LLE SG
Sbjct: 277 VGLLCLFSKMGFNGEQLGELIRQHPGILLECSG 309



 Score =  129 bits (325), Expect = 7e-28
 Identities = 66/142 (46%), Positives = 90/142 (63%)
 Frame = -1

Query: 860 VKTHPGLLLEGSGRNAFHLVKTLFKLGFTGKEVASLLLRLPQIQVGTFAKNLDRCLSFLM 681
           ++ HPG+LLE SG  A  LV  L K GFT  E+    L+ P I+ G F +N   C  FL+
Sbjct: 297 IRQHPGILLECSGNLAHSLVGLLLKFGFTTNEIYIFFLQFPPIEFGKFYRNFRHCYLFLI 356

Query: 680 HIEMDSEDIARIVRAHTVMLGTLYLKKANTVQTELSIGSKRLRKIIKGDPYRLKNWALGM 501
            IE++ E+I RIVR+HTV+LG+  LK+ N++   L+IG KRL  IIK +P  LK W LG 
Sbjct: 357 EIELEVEEIGRIVRSHTVLLGSCALKRVNSLLANLNIGKKRLCGIIKDNPQELKKWVLGS 416

Query: 500 KLEPLRNSAENQSSLMQKKEFL 435
           ++ PL N  E+  S +QK +FL
Sbjct: 417 RVGPLPNLGEDLRSQLQKTKFL 438


>ref|XP_002869971.1| hypothetical protein ARALYDRAFT_914700 [Arabidopsis lyrata subsp.
           lyrata] gi|297315807|gb|EFH46230.1| hypothetical protein
           ARALYDRAFT_914700 [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  154 bits (390), Expect = 2e-35
 Identities = 65/153 (42%), Positives = 107/153 (69%)
 Frame = -1

Query: 461 SLMQKKEFLLKDDGLLLENYHALCNYGVPRGMIGKIYREAKEVFSYDCGVLRSTLYSYKD 282
           + + +K   L DDG++ EN+HALCNYG+PRG IG +Y+EA+E+F Y+ G+L   L  Y++
Sbjct: 121 TFLPQKLMFLSDDGIMFENFHALCNYGIPRGKIGHMYKEAREIFRYESGLLAMKLRDYEN 180

Query: 281 MGLSQTSVIKVVVSSPSLLIGGVNGDFRKVLDMFRSLEIDFEWIEECISDNDTYDWSQVL 102
           +GLS+ +VIK+V S P LL+GG++ +F  V+D  + L++  +W+   +SD  TY W ++L
Sbjct: 181 LGLSKATVIKLVTSCPLLLVGGIDAEFASVVDKLKGLQVGCDWLGRYLSDRRTYSWRRIL 240

Query: 101 GFLNFVCRLDYSKEELRALVKTHPGLLLEGSGR 3
             + F+ ++    E L +L+KT+P L++EGSG+
Sbjct: 241 ETIEFLDKVGCKDENLSSLLKTYPALVIEGSGK 273



 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
 Frame = -1

Query: 860 VKTHPGLLLEGSGRNAFHLVKTLFKLGFTGKEVASLLLRLPQIQVGTFAKNLDRCLSFLM 681
           +KT+P L++EGSG+  + L   LFK+G    E+  L +  P++      KN+ + L FL+
Sbjct: 260 LKTYPALVIEGSGKKFYVLFGRLFKVGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDFLI 319

Query: 680 HIEMDSEDIARIVRAHTVMLGTLYLKKANTVQTELSIGSKRLRKIIKGDPYRLKNWALGM 501
            I M+++ I +I+ +H  ++G+  L    T    L++    L +++K +P RL ++    
Sbjct: 320 AIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVRQDELCQLLKKEPLRLFSFVSTT 379

Query: 500 KLEPLRNSAENQSSLMQKKEFLLK------DDGL-------------LLENYHALCNYGV 378
           K    +  +E+    ++K  FLL+       D +             L E +  L   G+
Sbjct: 380 KKRKSKPLSEDSRKYLEKTAFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGL 439

Query: 377 PRGMIGKIYREAKEVFSYDCGVLRSTLYSYKDM 279
              ++ +I R A  + +    V+   ++S  ++
Sbjct: 440 NHNVVTEIIRHAPMILNLSKDVIEKKIHSLTEL 472


>ref|XP_002530355.1| conserved hypothetical protein [Ricinus communis]
           gi|223530102|gb|EEF32016.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 573

 Score =  154 bits (388), Expect = 3e-35
 Identities = 76/151 (50%), Positives = 102/151 (67%)
 Frame = -1

Query: 458 LMQKKEFLLKDDGLLLENYHALCNYGVPRGMIGKIYREAKEVFSYDCGVLRSTLYSYKDM 279
           L+ +    L DD LLLENY+ LCNYG+PR  IG+IY+EA E+F Y+ G L S L +Y+ +
Sbjct: 147 LLPRDLMFLSDDDLLLENYYVLCNYGIPRYKIGRIYKEAMEIFGYNYGALASKLEAYEQL 206

Query: 278 GLSQTSVIKVVVSSPSLLIGGVNGDFRKVLDMFRSLEIDFEWIEECISDNDTYDWSQVLG 99
           GLSQ  + KVV  SP LLIG VN DF KV+ + R   I+F WIEE + +N +Y+W Q+L 
Sbjct: 207 GLSQYFICKVVACSPYLLIGDVNVDFVKVVKILREGGIEFSWIEEHLMEN-SYNWRQILA 265

Query: 98  FLNFVCRLDYSKEELRALVKTHPGLLLEGSG 6
            LN   +  Y++ +L AL+  HPG+L EGSG
Sbjct: 266 LLNLFRKAGYNEAQLGALISHHPGILFEGSG 296



 Score =  122 bits (305), Expect = 1e-25
 Identities = 71/212 (33%), Positives = 116/212 (54%)
 Frame = -1

Query: 860 VKTHPGLLLEGSGRNAFHLVKTLFKLGFTGKEVASLLLRLPQIQVGTFAKNLDRCLSFLM 681
           +  HPG+L EGSG     L+  LFKLG +  ++ S+ L+ P++QVG F  NL RC   L 
Sbjct: 284 ISHHPGILFEGSGDKTLSLIGFLFKLGCSMNQICSMFLQFPEMQVGKFVYNLKRCFLLLT 343

Query: 680 HIEMDSEDIARIVRAHTVMLGTLYLKKANTVQTELSIGSKRLRKIIKGDPYRLKNWALGM 501
            IEMD  +I +IV +H ++LG+  LK+ N++   L+IG KRL K+I+ +P  +K W +G 
Sbjct: 344 DIEMDINEIGKIVCSHLLLLGSFTLKRTNSILANLNIGKKRLHKLIQENPQEMKRWEMGS 403

Query: 500 KLEPLRNSAENQSSLMQKKEFLLKDDGLLLENYHALCNYGVPRGMIGKIYREAKEVFSYD 321
           ++E L +S E   +L  K +FL+  D  L+ N + +               +A +VF   
Sbjct: 404 RVERLPSSWEESKTL--KTKFLV--DMGLVNNLNKM--------------EQALKVFRGR 445

Query: 320 CGVLRSTLYSYKDMGLSQTSVIKVVVSSPSLL 225
              ++         GL +  V++++ +SP +L
Sbjct: 446 GTEIQERFDCIVKAGLDRKDVLEMIKTSPQIL 477