BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011794
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   4e-08
gb|ABE80133.2| Polynucleotidyl transferase, Ribonuclease H fold ...    61   8e-08
ref|XP_002532695.1| conserved hypothetical protein [Ricinus comm...    61   1e-07
ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07

>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = -3

Query: 356 QTLFTSIMWFIWLERNKYRFH-PTTGPPNPSELIQRARKFTTEIIRVHSTATTNDQAVSS 180
           QT F +  W++W  RNK  F      P NP+ +IQ   KFT EI         +     +
Sbjct: 567 QTTFMTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQ---KFTREIEDNTKLVHKSSHQKET 623

Query: 179 IAISWQSPPPTHLKFNVDGSSYGNPDPSGAGGVLRNTDGAFLLGFATPISRGSTLLAE 6
           I I W  PP   +K N DG+  G+   +G GG+LR++DG ++ G+   I       AE
Sbjct: 624 IYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAE 681


>gb|ABE80133.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 282

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = -3

Query: 356 QTLFTSIMWFIWLERNKYRFH-PTTGPPNPSELIQRARKFTTEIIRVHSTATTNDQAVSS 180
           QT FT+  W++W  RNK  F      P NP+ +IQ   KFT EI         +     +
Sbjct: 120 QTNFTTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQ---KFTREIEDNTKLVHKSSHQKET 176

Query: 179 IAISWQSPPPTHLKFNVDGSSYGNPDPSGAGGVLRNTDGAFLLGFATPISRGSTLLAE 6
           I I W  PP   +K N DG+   +   +G GG+LR++DG ++ G+   I       AE
Sbjct: 177 IYIGWMRPPFGWVKLNCDGAWKASGTFAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAE 234


>ref|XP_002532695.1| conserved hypothetical protein [Ricinus communis]
           gi|223527578|gb|EEF29695.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 202

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
 Frame = -3

Query: 362 YLQTLFTSIMWFIWLERNKYRFHPTT-GPPNPSELIQRARK-----------FTTEIIRV 219
           +L  +F +  W +WLERNK+ F  ++      SELI   +            F+   I  
Sbjct: 13  FLDNMFFACCWSLWLERNKFIFEGSSIAWEKLSELILIRKMHWIEASIPSYPFSVNEIMT 72

Query: 218 HSTATTNDQAVSSIA--ISWQSPPPTHLKFNVDGSSYGNPDPSGAGGVLRNTDGAFLLGF 45
            S      ++V SI   + W  P    LK+NV GS  G P  +G GGVLRN +G F+  F
Sbjct: 73  SSLPLKRWRSVCSIRPDLQWLPPLANELKWNVYGSIIGKPGIAGIGGVLRNAEGLFIALF 132

Query: 44  ATPI 33
           + PI
Sbjct: 133 SCPI 136


>ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|222863748|gb|EEF00879.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = -3

Query: 347 FTSIMWFIWLERNKYRFHPTTGPPNPSELIQRARKFTTEIIRVHSTATTNDQAVSS---I 177
           F   +W+IW ER    F    G    + L  +     TE  + H     ND+  SS    
Sbjct: 17  FGIALWYIWKERCNRVFGVDQGNWFRAILAIKRMVRDTEFTQRHG----NDEGRSSKEDT 72

Query: 176 AISWQSPPPTHLKFNVDGSSYGNPDPSGAGGVLRNTDGAFLLGFATPISRGSTLLAE 6
            + W+ P    +K NVDG S GNP  +GAGGV+R+  GA++ GFA  I   S++ AE
Sbjct: 73  QVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAE 129


>ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|222852892|gb|EEE90439.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = -3

Query: 347 FTSIMWFIWLERNKYRFHPTTGPPNPSELIQRARKFTTEIIRVHSTATTNDQAVSS---I 177
           F   +W+IW ER    F    G    + L  +     TE  + H     ND+  SS    
Sbjct: 17  FGIALWYIWKERCNRVFGVDQGNWFRAILAIKRMVRDTEFTQRHG----NDEGRSSKEDT 72

Query: 176 AISWQSPPPTHLKFNVDGSSYGNPDPSGAGGVLRNTDGAFLLGFATPISRGSTLLAE 6
            + W+ P    +K NVDG S GNP  +GAGGV+R+  GA++ GFA  I   S++ AE
Sbjct: 73  QVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAE 129