BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011769
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34116.3| unnamed protein product [Vitis vinifera]               75   6e-12
ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containi...    75   6e-12
ref|XP_002514422.1| pentatricopeptide repeat-containing protein,...    72   4e-11
ref|XP_002525881.1| pentatricopeptide repeat-containing protein,...    71   1e-10
ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09

>emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/94 (40%), Positives = 59/94 (62%)
 Frame = +3

Query: 36  DHLVELDTVRVVDILNHMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRL 215
           D  ++L+T RVV+I  ++  +P+ A  FF QL + GF+H++  Y+AL+R+LC     ++L
Sbjct: 56  DRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKL 115

Query: 216 GSLFMELIVSKEKHPHFDVYELFEVLGESYGNYE 317
            SL  E++ SKE    FD+  LF+VL E  G  E
Sbjct: 116 QSLLSEIVGSKESVLGFDITALFDVLREGGGEVE 149


>ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/94 (40%), Positives = 59/94 (62%)
 Frame = +3

Query: 36  DHLVELDTVRVVDILNHMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRL 215
           D  ++L+T RVV+I  ++  +P+ A  FF QL + GF+H++  Y+AL+R+LC     ++L
Sbjct: 56  DRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKL 115

Query: 216 GSLFMELIVSKEKHPHFDVYELFEVLGESYGNYE 317
            SL  E++ SKE    FD+  LF+VL E  G  E
Sbjct: 116 QSLLSEIVGSKESVLGFDITALFDVLREGGGEVE 149


>ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546418|gb|EEF47918.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 809

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/92 (40%), Positives = 57/92 (61%)
 Frame = +3

Query: 36  DHLVELDTVRVVDILNHMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRL 215
           +HL E++T +VV  LN++  +P  A  +F QL + G+ HD   Y+A+VRILC  G  ++L
Sbjct: 52  NHLFEINTAKVVITLNNLRNEPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFWGWSRKL 111

Query: 216 GSLFMELIVSKEKHPHFDVYELFEVLGESYGN 311
            S+ ME I+ K+ +  F +  LFE LG+   N
Sbjct: 112 DSILME-IIKKDGNLDFGIVNLFEALGDGIAN 142


>ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534795|gb|EEF36485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 913

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = +3

Query: 45  VELDTVRVVDILNHMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSL 224
           ++LD+ +VVDIL ++  +P  AL FF QL D GF+HDI  Y+A++RILC  G  K+L S+
Sbjct: 62  LQLDSFKVVDILYNLKNQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSI 121

Query: 225 FMELIV--SKEKHPHFDVYELFEVLGESY 305
           F+++I     +    F++    + L + +
Sbjct: 122 FLDIIYVSCNDNDTPFEISHFLDTLSDGF 150


>ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Cucumis sativus]
          Length = 795

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/85 (41%), Positives = 54/85 (63%)
 Frame = +3

Query: 45  VELDTVRVVDILNHMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSL 224
           V+    +VV +L  + ++P  A  FF +L +RGF+H+I  Y+AL+RILC  G  ++L +L
Sbjct: 55  VQCKPSKVVQVLESLRREPKIAFSFFCELEERGFQHNISTYAALIRILCSWGLGRKLETL 114

Query: 225 FMELIVSKEKHPHFDVYELFEVLGE 299
           F+ LI SK+    FDV +L E L +
Sbjct: 115 FLNLIGSKK--VEFDVLDLIESLNQ 137