BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011756
         (1674 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531375.1| RNA and export factor binding protein, putat...   248   4e-63
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro...   247   6e-63
ref|XP_004149042.1| PREDICTED: RNA and export factor-binding pro...   238   3e-60
ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and expo...   237   8e-60
ref|XP_003539690.1| PREDICTED: RNA and export factor-binding pro...   232   2e-58

>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
            gi|223529035|gb|EEF31023.1| RNA and export factor binding
            protein, putative [Ricinus communis]
          Length = 247

 Score =  248 bits (632), Expect = 4e-63
 Identities = 147/268 (54%), Positives = 159/268 (59%)
 Frame = +2

Query: 278  MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTTPY 457
            M+  LDMSL+DII                                TRRF NRG+NR  PY
Sbjct: 1    MSSALDMSLDDIIKSNKKPGSGNSRGRGRSSGPGP----------TRRFNNRGTNRAAPY 50

Query: 458  SMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSN 637
            +  K   APE+ WQHDMF D                      IETGTKLYISNL+YGVSN
Sbjct: 51   AAAK---APESTWQHDMFTDQGGMGMFQGQGGGGSRASG---IETGTKLYISNLEYGVSN 104

Query: 638  EDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIE 817
            EDIKELFSEVGDLKRYS+HYDRSGRSKGTAEVVFSRR+DA AAVKRYNNVQLDGKPMKIE
Sbjct: 105  EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIE 164

Query: 818  IVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXXX 997
            IVGTNI TP A P A NG FGN N APRGGQGR                           
Sbjct: 165  IVGTNIATPAATP-AANGNFGNSNGAPRGGQGR----GGTMRRPRGASSDGRGFGRGRGR 219

Query: 998  XXXXSDPVSAKDLDAELDKYHSEAMQIN 1081
                 + VSA+DLDA+L+KYHSEAMQ N
Sbjct: 220  GRGRGEKVSAEDLDADLEKYHSEAMQTN 247


>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
            gi|297746115|emb|CBI16171.3| unnamed protein product
            [Vitis vinifera]
          Length = 243

 Score =  247 bits (631), Expect = 6e-63
 Identities = 145/268 (54%), Positives = 158/268 (58%)
 Frame = +2

Query: 278  MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTTPY 457
            M++ LDMSL+D+I                                 RR  NRG+NR TPY
Sbjct: 1    MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGP---------ARRLPNRGANRITPY 51

Query: 458  SMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSN 637
            S+ K   APET WQHDMF D                      IETGTKLYISNLDYGVSN
Sbjct: 52   SVSK---APETTWQHDMFADQAAAYPAQAGRTSA--------IETGTKLYISNLDYGVSN 100

Query: 638  EDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIE 817
            EDIKELFSEVGDLKRYS+HYDRSGRSKGTAEVVFSRR DA AAVKRYNNVQLDGKPMKIE
Sbjct: 101  EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIE 160

Query: 818  IVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXXX 997
            IVGTNI TP A+P   NG FGN N   R  QGRV +                        
Sbjct: 161  IVGTNIATPAAVPPVTNGTFGNSNGGLRSAQGRVGSQG-----RPRGGSGGRGFGRGRGR 215

Query: 998  XXXXSDPVSAKDLDAELDKYHSEAMQIN 1081
                 + VSA+DLDA+L+KYHSEAMQIN
Sbjct: 216  GRGRGEKVSAEDLDADLEKYHSEAMQIN 243


>ref|XP_004149042.1| PREDICTED: RNA and export factor-binding protein 2-like [Cucumis
            sativus]
          Length = 237

 Score =  238 bits (608), Expect = 3e-60
 Identities = 139/268 (51%), Positives = 160/268 (59%)
 Frame = +2

Query: 278  MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTTPY 457
            M + LDMSL+DII                                +RRF+NRG NR TPY
Sbjct: 1    MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGP---------SRRFRNRGLNRATPY 51

Query: 458  SMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSN 637
            S  K   APETAW HDMF+D                      IETGTKLY+SNLDYGVSN
Sbjct: 52   STSK---APETAWSHDMFVD--------HGAAYPSHPPRASAIETGTKLYVSNLDYGVSN 100

Query: 638  EDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIE 817
            EDIKELFSEVGD+KRYS++YD+SGRSKGTAE+VFSR++DA AA+KRYNNVQLDGKPMK+E
Sbjct: 101  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLE 160

Query: 818  IVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXXXXXXXXXXXXXXXXX 997
            IVGTNIVTP A+P   N  FGNPN  PRGG+   R                         
Sbjct: 161  IVGTNIVTP-AVPAPSNASFGNPNGFPRGGRAMGRNRGGGRGRSGSGSGSGRGH------ 213

Query: 998  XXXXSDPVSAKDLDAELDKYHSEAMQIN 1081
                 + +SA+DLDA+LDKYH EAMQIN
Sbjct: 214  ----GEKLSAEDLDADLDKYHEEAMQIN 237


>ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and export factor-binding protein
            2-like [Cucumis sativus]
          Length = 248

 Score =  237 bits (604), Expect = 8e-60
 Identities = 140/270 (51%), Positives = 161/270 (59%), Gaps = 2/270 (0%)
 Frame = +2

Query: 278  MTDGLDMSLEDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRFQNRGSNRTTPY 457
            M + LDMSL+DII                                +RRF+NRG NR TPY
Sbjct: 1    MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGP---------SRRFRNRGLNRATPY 51

Query: 458  SMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXXIETGTKLYISNLDYGVSN 637
            S  K   APETAW HDMF+D                      IETGTKLY+SNLDYGVSN
Sbjct: 52   STSK---APETAWSHDMFVD--------HGAAYPSHPPRASAIETGTKLYVSNLDYGVSN 100

Query: 638  EDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIE 817
            EDIKELFSEVGD+KRYS++YD+SGRSKGTAE+ FSR++DA AA+KRYNNVQLDGKPMK+E
Sbjct: 101  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIXFSRQADALAAIKRYNNVQLDGKPMKLE 160

Query: 818  IVGTNIVTPGALPIAPNGVFGNPNFAPRGGQ--GRVRATSXXXXXXXXXXXXXXXXXXXX 991
            IVGTNIVTP A+P   N  FGNPN  PRGG+  GR R                       
Sbjct: 161  IVGTNIVTP-AVPAPSNASFGNPNGFPRGGRAMGRNRG-GGRGRGPGRGRGRGRGSGSGS 218

Query: 992  XXXXXXSDPVSAKDLDAELDKYHSEAMQIN 1081
                   + +SA+DLDA+LDKYH EAMQIN
Sbjct: 219  GSGRGHGEKLSAEDLDADLDKYHEEAMQIN 248


>ref|XP_003539690.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine max]
          Length = 247

 Score =  232 bits (592), Expect = 2e-58
 Identities = 128/223 (57%), Positives = 144/223 (64%)
 Frame = +2

Query: 413  TRRFQNRGSNRTTPYSMGKPVHAPETAWQHDMFIDPXXXXXXXXXXXXXXXXXXXXXIET 592
            TRR  NR +NR  PY+   P  APE  WQHD++ D                      IET
Sbjct: 36   TRRLPNRAANRAAPYA---PAKAPEATWQHDLYADQHVAAAGYPAQGGRAAS-----IET 87

Query: 593  GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSVHYDRSGRSKGTAEVVFSRRSDAAAAVK 772
            GTKLYISNLDYGVSN+DIKELF+EVGDLKR++VHYDRSGRSKGTAEVVFSRR+DA +AVK
Sbjct: 88   GTKLYISNLDYGVSNDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVSAVK 147

Query: 773  RYNNVQLDGKPMKIEIVGTNIVTPGALPIAPNGVFGNPNFAPRGGQGRVRATSXXXXXXX 952
            RYNNVQLDGKPMKIEIVGTNI TPG  P APNG  GN N  PR GQG  R  +       
Sbjct: 148  RYNNVQLDGKPMKIEIVGTNISTPGVAP-APNGAIGNFNGVPRSGQG--RGGALRRPGGR 204

Query: 953  XXXXXXXXXXXXXXXXXXXSDPVSAKDLDAELDKYHSEAMQIN 1081
                                + VSA DLDA+L+KYH+EAMQ+N
Sbjct: 205  GQGIRRDRGRGRGRGGGGRGEKVSADDLDADLEKYHAEAMQLN 247