BLASTX nr result
ID: Coptis23_contig00011746
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00011746
(1688 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI35029.3| unnamed protein product [Vitis vinifera] 622 e-175
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat... 622 e-175
ref|NP_189505.2| pentatricopeptide repeat-containing protein [Ar... 526 e-147
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar... 525 e-146
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ... 449 e-124
>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 622 bits (1603), Expect = e-175
Identities = 296/479 (61%), Positives = 366/479 (76%)
Frame = +2
Query: 26 MQAWKRCMNLIERCKNMQQLKTIHAIFITNGHHDNNYAMSKLISFTALSNNGNLIYASQL 205
M+AWKRC++L + C NM+Q K IHA+FI NG H NNYA+SKLISF ALSN+G+L YAS +
Sbjct: 1 MEAWKRCISLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLI 60
Query: 206 FDQIPNPNSFIYNTLIRAFSRSTQPQVSLHYFYLMLKDDCIVPDYHTLPFVLIACSNACC 385
F QI NPN F YNTLIRA+SRS+ PQ++LHYF LML D+ + PD HT PF++ AC+N+
Sbjct: 61 FSQIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLW 120
Query: 386 VSLGEGIHCWVFKNGWGFSDKHIQTALLRFYLKCSCLVEFRKVFDEIHERDVFQWNVFMN 565
+ LG+ IH WV KNG SD+H+QTAL+RFY +C + + RK+FDEI DV QWNV +N
Sbjct: 121 MLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLN 180
Query: 566 GCLRYGMDVEALSAFRDMLSYGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFS 745
G +R G+ EAL+AFR+ML GVE DE+C+ T L CA GAL+QG WIHEYV KR
Sbjct: 181 GYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLE 240
Query: 746 EDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDTM 925
DVF+GTALVDMYAKCGCID++VEVF M KRN FSW+AMIGGFALHG ++A+ CL+ M
Sbjct: 241 ADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERM 300
Query: 926 IMKDGLRPDGVVLLAVLTACTHAGCEEEGQLLLRNMKALYGIVPKHEHYSCTVDLLCRAG 1105
++DGLRPDGVVLL V+ AC HAG +EEGQ LL NM+A YGI+PKHEHYSC VDLLCRAG
Sbjct: 301 QVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAG 360
Query: 1106 RLNEALELIQTMPMRPLASVWGSLLSTCKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYV 1285
+L+EAL+LI+ MPM+P A+VWG+LLS C+TH N + + G +EDGAYV
Sbjct: 361 QLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYV 420
Query: 1286 QLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIH 1462
QLSNIYL AQ+C DA RIR M+ DK IK PGCS+IEV G+VN+FV+GD+ HP +IH
Sbjct: 421 QLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIH 479
>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 622 bits (1603), Expect = e-175
Identities = 296/479 (61%), Positives = 366/479 (76%)
Frame = +2
Query: 26 MQAWKRCMNLIERCKNMQQLKTIHAIFITNGHHDNNYAMSKLISFTALSNNGNLIYASQL 205
M+AWKRC++L + C NM+Q K IHA+FI NG H NNYA+SKLISF ALSN+G+L YAS +
Sbjct: 1 MEAWKRCISLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLI 60
Query: 206 FDQIPNPNSFIYNTLIRAFSRSTQPQVSLHYFYLMLKDDCIVPDYHTLPFVLIACSNACC 385
F QI NPN F YNTLIRA+SRS+ PQ++LHYF LML D+ + PD HT PF++ AC+N+
Sbjct: 61 FSQIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLW 120
Query: 386 VSLGEGIHCWVFKNGWGFSDKHIQTALLRFYLKCSCLVEFRKVFDEIHERDVFQWNVFMN 565
+ LG+ IH WV KNG SD+H+QTAL+RFY +C + + RK+FDEI DV QWNV +N
Sbjct: 121 MLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLN 180
Query: 566 GCLRYGMDVEALSAFRDMLSYGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFS 745
G +R G+ EAL+AFR+ML GVE DE+C+ T L CA GAL+QG WIHEYV KR
Sbjct: 181 GYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLE 240
Query: 746 EDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDTM 925
DVF+GTALVDMYAKCGCID++VEVF M KRN FSW+AMIGGFALHG ++A+ CL+ M
Sbjct: 241 ADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERM 300
Query: 926 IMKDGLRPDGVVLLAVLTACTHAGCEEEGQLLLRNMKALYGIVPKHEHYSCTVDLLCRAG 1105
++DGLRPDGVVLL V+ AC HAG +EEGQ LL NM+A YGI+PKHEHYSC VDLLCRAG
Sbjct: 301 QVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAG 360
Query: 1106 RLNEALELIQTMPMRPLASVWGSLLSTCKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYV 1285
+L+EAL+LI+ MPM+P A+VWG+LLS C+TH N + + G +EDGAYV
Sbjct: 361 QLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYV 420
Query: 1286 QLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIH 1462
QLSNIYL AQ+C DA RIR M+ DK IK PGCS+IEV G+VN+FV+GD+ HP +IH
Sbjct: 421 QLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIH 479
>ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing protein
At3g28640 gi|9294278|dbj|BAB02180.1| unnamed protein
product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 526 bits (1356), Expect = e-147
Identities = 256/482 (53%), Positives = 345/482 (71%), Gaps = 4/482 (0%)
Frame = +2
Query: 29 QAWKRCMNLIERCKNMQQLKTIHAIFITNGHHDNNYAMSKLIS-FTALSN-NGNLIYASQ 202
Q+WK + +RC ++Q+K+ H++FI +G H N YA+SKL++ F L N N + YAS
Sbjct: 9 QSWKSLILASQRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASS 68
Query: 203 LFDQIPNPNSFIYNTLIRAFSRSTQPQVSLHYFYLMLKDD--CIVPDYHTLPFVLIACSN 376
+FD I PNSF+Y+T+IR SRS+QP + L YF LM+K++ I P Y T F+++AC
Sbjct: 69 IFDSIEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLK 128
Query: 377 ACCVSLGEGIHCWVFKNGWGFSDKHIQTALLRFYLKCSCLVEFRKVFDEIHERDVFQWNV 556
AC S+G+ IHCWV KNG SD H+QT +LR Y++ L++ RKVFDEI + DV +W+V
Sbjct: 129 ACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDV 188
Query: 557 FMNGCLRYGMDVEALSAFRDMLSYGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRD 736
MNG +R G+ E L FR+ML G+E DE+ V T LTACA GAL QG WIHE+VKK+
Sbjct: 189 LMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKS 248
Query: 737 EFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCL 916
DVFVGTALVDMYAKCGCI+ AVEVF+++ +RN FSWAA+IGG+A +G+AK+A+ CL
Sbjct: 249 WIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCL 308
Query: 917 DTMIMKDGLRPDGVVLLAVLTACTHAGCEEEGQLLLRNMKALYGIVPKHEHYSCTVDLLC 1096
+ + +DG++PD VVLL VL AC H G EEG+ +L NM+A Y I PKHEHYSC VDL+C
Sbjct: 309 ERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMC 368
Query: 1097 RAGRLNEALELIQTMPMRPLASVWGSLLSTCKTHGNXXXXXXXXXXXXQIEHDSGAQEDG 1276
RAGRL++AL LI+ MPM+PLASVWG+LL+ C+TH N +E + +E+
Sbjct: 369 RAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEA 428
Query: 1277 AYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLE 1456
A VQLSNIY + QR +A ++R M++ +G++KTPG SV+EV+G V +FV+GDV HP L+
Sbjct: 429 ALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQ 488
Query: 1457 IH 1462
IH
Sbjct: 489 IH 490
>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
product [Arabidopsis thaliana] gi|20259531|gb|AAM13885.1|
unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis
thaliana] gi|332643950|gb|AEE77471.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 525 bits (1351), Expect = e-146
Identities = 257/482 (53%), Positives = 344/482 (71%), Gaps = 4/482 (0%)
Frame = +2
Query: 29 QAWKRCMNLIERCKNMQQLKTIHAIFITNGHHDNNYAMSKLIS-FTALSN-NGNLIYASQ 202
Q+WK + +RC ++Q+K+ H++FI +G H N YA+SKL++ F L N N + YAS
Sbjct: 9 QSWKSLILASQRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASS 68
Query: 203 LFDQIPNPNSFIYNTLIRAFSRSTQPQVSLHYFYLMLKDD--CIVPDYHTLPFVLIACSN 376
+FD I PNSF+Y+T+IR SRS+QP + L YF LM+K++ I P Y T F+++AC
Sbjct: 69 IFDSIEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLK 128
Query: 377 ACCVSLGEGIHCWVFKNGWGFSDKHIQTALLRFYLKCSCLVEFRKVFDEIHERDVFQWNV 556
AC S+G+ IHCWV KNG SD H+QT +LR Y++ L + RKVFDEI + DV +W+V
Sbjct: 129 ACFFSVGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDV 188
Query: 557 FMNGCLRYGMDVEALSAFRDMLSYGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRD 736
MNG +R G+ E L F++ML G+E DE+ V T LTACA GAL QG WIHE+VKK+
Sbjct: 189 LMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKR 248
Query: 737 EFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCL 916
DVFVGTALVDMYAKCGCI+ AVEVF ++ +RN FSWAA+IGG+A +G+AK+A CL
Sbjct: 249 WIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCL 308
Query: 917 DTMIMKDGLRPDGVVLLAVLTACTHAGCEEEGQLLLRNMKALYGIVPKHEHYSCTVDLLC 1096
D + +DG++PD VVLL VL AC H G EEG+ +L NM+A YGI PKHEHYSC VDL+C
Sbjct: 309 DRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMC 368
Query: 1097 RAGRLNEALELIQTMPMRPLASVWGSLLSTCKTHGNXXXXXXXXXXXXQIEHDSGAQEDG 1276
RAGRL++AL+LI+ MPM+PLASVWG+LL+ C+TH N +E + +E+
Sbjct: 369 RAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEA 428
Query: 1277 AYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLE 1456
A VQLSNIY + QR +A ++R M++ +GI+KTPG S++EV+G V +FV+GDV HP L+
Sbjct: 429 ALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQ 488
Query: 1457 IH 1462
IH
Sbjct: 489 IH 490
>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297322958|gb|EFH53379.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 399
Score = 449 bits (1156), Expect = e-124
Identities = 214/385 (55%), Positives = 280/385 (72%)
Frame = +2
Query: 308 MLKDDCIVPDYHTLPFVLIACSNACCVSLGEGIHCWVFKNGWGFSDKHIQTALLRFYLKC 487
M+K++ I P Y T F+++AC AC S+G+ IHCWV KNG SD H+QT +LR Y++
Sbjct: 1 MVKEEDIAPSYLTFYFLIVACFKACLFSVGKQIHCWVVKNGVFLSDGHVQTGILRIYVED 60
Query: 488 SCLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSYGVELDEYCVATGL 667
L++ KVFDEI + DV +W+V MNG +R G+ E L FR+ML GVE DE+ V T L
Sbjct: 61 KVLLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVEPDEFSVTTAL 120
Query: 668 TACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNE 847
TACA GAL QG WIHE+VKK+ DVFVGTALVDMYAKCGCI+ AVEVF ++ +RN
Sbjct: 121 TACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNV 180
Query: 848 FSWAAMIGGFALHGFAKEAIHCLDTMIMKDGLRPDGVVLLAVLTACTHAGCEEEGQLLLR 1027
FSWAA+IGG+A +G+AK+A+ CLD M +DG++PD VVLL VL AC H G +EG+ +L
Sbjct: 181 FSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAMLG 240
Query: 1028 NMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSTCKTHGNX 1207
NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ MPM+PLASVWG+LL+ C+TH N
Sbjct: 241 NMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNV 300
Query: 1208 XXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCS 1387
+E + +E+ A VQLSNIY + QR +A ++R M++ +GI+KTPG S
Sbjct: 301 ELGELAVKNLLDLEKGNAEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGIRKTPGWS 360
Query: 1388 VIEVNGKVNEFVAGDVVHPLRLEIH 1462
V+EV+G V +FV+GDV HP L+IH
Sbjct: 361 VLEVDGNVTKFVSGDVSHPNLLQIH 385
Score = 101 bits (251), Expect = 7e-19
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 2/236 (0%)
Frame = +2
Query: 185 LIYASQLFDQIPNPNSFIYNTLIRAFSRSTQPQVSLHYFYLMLKDDCIVPDYHTLPFVLI 364
L+ A ++FD+IP P+ ++ L+ + R L F ML + PD ++ L
Sbjct: 63 LLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRG-VEPDEFSVTTALT 121
Query: 365 ACSNACCVSLGEGIHCWVFKNGWGFSDKHIQTALLRFYLKCSCLVEFRKVFDEIHERDVF 544
AC+ ++ G+ IH +V K W SD + TAL+ Y KC C+ +VF+++ R+VF
Sbjct: 122 ACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNVF 181
Query: 545 QWNVFMNGCLRYGMDVEALSAFRDM-LSYGVELDEYCVATGLTACAHSGALRQGMWIHEY 721
W + G YG +A++ M G++ D + L ACAH G L++G +
Sbjct: 182 SWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAMLGN 241
Query: 722 VKKRDEFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFS-WAAMIGGFALH 886
++ R + + +VD+ + G +D A+++ +M + S W A++ G H
Sbjct: 242 MEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTH 297