BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011743
         (1650 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   795   0.0  
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   746   0.0  
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ...   733   0.0  
ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containi...   733   0.0  
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...   731   0.0  

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic [Vitis vinifera]
          Length = 723

 Score =  795 bits (2052), Expect = 0.0
 Identities = 382/497 (76%), Positives = 437/497 (87%)
 Frame = -1

Query: 1650 IENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKV 1471
            I   +ELDNITYSTIITCAKRCN+FDKAV+WFERMYKTGLMPDEVTYSA+LDVYAKLGKV
Sbjct: 226  ISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKV 285

Query: 1470 EEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTL 1291
            EEVLSLYE+GRASGWKPDPIAF+VLGKMFGEAGDYDGIRYVLQEMKS+GV+PNLVVYNTL
Sbjct: 286  EEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTL 345

Query: 1290 LEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGW 1111
            LEAMGKAGKPGLARSLFEEMVG+GV+P+ KTLTALVKIYGKARW RDAL LWERMRSNGW
Sbjct: 346  LEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMRSNGW 405

Query: 1110 PMDFILYNTLLSMCADLGLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKA 931
            PMDFILYNTLLSMCADLGLEEEAEKLF DMK S+  CRPDSWSYTAMLNIYGSGG V++A
Sbjct: 406  PMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSE-HCRPDSWSYTAMLNIYGSGGNVDRA 464

Query: 930  VSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSV 751
            + +F+EM  L V++NVMGCTCL QCLG+A+RI+D+V+++ +S+++GV+PDDRLCGCLLSV
Sbjct: 465  MQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGCLLSV 524

Query: 750  VSFCENDVEVGMILGCLERANRSLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPF 571
            VSFCE   +   +L CL++AN  LVAFV LL EE +  E +KEEF+ IL   A+E RRPF
Sbjct: 525  VSFCEGAEDANKVLACLQQANPKLVAFVNLL-EEKISFEALKEEFRGILTDTAVEARRPF 583

Query: 570  CNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAREWTLNLRSLSVGAAQTAFEEW 391
            CNCLIDICR R+LHERAHELLY G +YGLYPGLH++TA EW L++RSLSVGAA TA EEW
Sbjct: 584  CNCLIDICRNRSLHERAHELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAAHTALEEW 643

Query: 390  MGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSEEKVGSFVA 211
            MG +SK++ REE LP+ FSA+ G GTHKFS+GLA+A  SH+KKL APFT SEEK G FVA
Sbjct: 644  MGTLSKIVQREEALPEAFSANTGTGTHKFSQGLASAFASHVKKLAAPFTQSEEKAGCFVA 703

Query: 210  TREELTSWVQSNVQSLA 160
            TRE+L SWVQS + S A
Sbjct: 704  TREDLVSWVQSRILSPA 720



 Score = 85.5 bits (210), Expect = 4e-14
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 6/293 (2%)
 Frame = -1

Query: 1419 DPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGLARSLF 1240
            + I ++V  K       +  I  +  EM S GVE + + Y+T++    +      A   F
Sbjct: 198  ETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWF 257

Query: 1239 EEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGWPMDFILYNTLLSMCADL 1060
            E M   G++P+E T +A++ +Y K     + L L+ER R++GW  D I +  L  M  + 
Sbjct: 258  ERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEA 317

Query: 1059 GLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKAVSMFEEMLRLRVKLNVM 880
            G  +    +  +MK      +P+   Y  +L   G  GK   A S+FEEM+   V  +  
Sbjct: 318  GDYDGIRYVLQEMKSLG--VQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAK 375

Query: 879  GCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSVVSFCENDVEVGMILGCL 700
              T L++  GKA+   D + ++      G   D  L   LLS+ +    + E   +   +
Sbjct: 376  TLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDM 435

Query: 699  ERANR------SLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPFCNCL 559
            +++        S  A + + G     ++R  + F + ++ + +++    C CL
Sbjct: 436  KKSEHCRPDSWSYTAMLNIYGSGG-NVDRAMQLFDE-MSELGVQINVMGCTCL 486


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Cucumis sativus]
            gi|449521148|ref|XP_004167592.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  746 bits (1926), Expect = 0.0
 Identities = 357/500 (71%), Positives = 418/500 (83%)
 Frame = -1

Query: 1650 IENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKV 1471
            I   IELDNITYSTIITCAK+C+ FDKA+EWFERMYKTGLMPDEVTYSA+LDVYA LGKV
Sbjct: 212  ISAGIELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKV 271

Query: 1470 EEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTL 1291
            EEVLSLYE+GRASGW PDP  FSVLGKMFGEAGDYDGI YVLQEMKS+ ++PNLVVYNTL
Sbjct: 272  EEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTL 331

Query: 1290 LEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGW 1111
            L+AMGKAGKPG ARSLF+EMV +G+ PNEKTLTALVKIYGKARW RDAL LWERMRSNGW
Sbjct: 332  LDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWERMRSNGW 391

Query: 1110 PMDFILYNTLLSMCADLGLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKA 931
            PMDFILYNTLL+MCADLGLEEEAE LF +MK S    RPDSWSYTAMLNIYGSGG V+++
Sbjct: 392  PMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHS-RPDSWSYTAMLNIYGSGGNVKRS 450

Query: 930  VSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSV 751
            + +FEEML L V++NVM CTCLIQCLGK+ RI+D+VR++ +S+ KG++PDDRLCGCLLSV
Sbjct: 451  MELFEEMLELGVEINVMCCTCLIQCLGKSGRIDDLVRVFNVSVQKGIKPDDRLCGCLLSV 510

Query: 750  VSFCENDVEVGMILGCLERANRSLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPF 571
            +S C N  ++  +  CL++AN  LV+F+ LL + D+  E +K EF+ IL   A E RRPF
Sbjct: 511  LSLCYNSEDINKVFTCLQQANPKLVSFINLLQQNDITFEVVKNEFRNILGETAPEARRPF 570

Query: 570  CNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAREWTLNLRSLSVGAAQTAFEEW 391
            CNCLIDICR +NL ERAHELLY G +YGLYPGLH+KT  EW L++RSLSVGAAQTA EEW
Sbjct: 571  CNCLIDICRNQNLRERAHELLYLGSLYGLYPGLHNKTETEWCLDVRSLSVGAAQTALEEW 630

Query: 390  MGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSEEKVGSFVA 211
            M  +SK++ REE LP+L SA  GAGTH+FS+GLAN+  SH+ KL APF   E++ G FVA
Sbjct: 631  MITLSKIVQREEALPELLSAQTGAGTHRFSQGLANSFASHVDKLAAPFQLREDRAGWFVA 690

Query: 210  TREELTSWVQSNVQSLAVSA 151
            TRE+L +WV S V S+A +A
Sbjct: 691  TREDLVTWVHSRVPSVAATA 710



 Score = 90.9 bits (224), Expect = 9e-16
 Identities = 72/299 (24%), Positives = 135/299 (45%), Gaps = 6/299 (2%)
 Frame = -1

Query: 1419 DPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGLARSLF 1240
            + I ++V  K       +  I  +  EM S G+E + + Y+T++    K  +   A   F
Sbjct: 184  ETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAKKCSRFDKAMEWF 243

Query: 1239 EEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGWPMDFILYNTLLSMCADL 1060
            E M   G++P+E T +A++ +Y       + L L+ER R++GW  D   ++ L  M  + 
Sbjct: 244  ERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEA 303

Query: 1059 GLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKAVSMFEEMLRLRVKLNVM 880
            G  +    +  +MK  +   +P+   Y  +L+  G  GK   A S+F+EM+   +  N  
Sbjct: 304  GDYDGIMYVLQEMKSIE--MQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEK 361

Query: 879  GCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSVVSFCENDVEVGMILGCL 700
              T L++  GKA+   D + ++      G   D  L   LL++ +    + E   +   +
Sbjct: 362  TLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEM 421

Query: 699  ERANR------SLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPFCNCLIDICRK 541
            +++        S  A + + G     ++R  E F+++L  + +E+    C CLI    K
Sbjct: 422  KKSKHSRPDSWSYTAMLNIYGSGG-NVKRSMELFEEMLE-LGVEINVMCCTCLIQCLGK 478


>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509692|gb|AES90834.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  733 bits (1893), Expect = 0.0
 Identities = 344/499 (68%), Positives = 421/499 (84%)
 Frame = -1

Query: 1650 IENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKV 1471
            I+  +ELDNITYSTII+CAK+CN+FDKAV WFERMYKTGLMPDEVT+SA+LDVYA+LGKV
Sbjct: 217  IDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKV 276

Query: 1470 EEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTL 1291
            EEV++L+E+GRA+GWKPDPI FSVLGKMFGEAGDYDGIRYVLQEMKS+GV+PNLVVYNTL
Sbjct: 277  EEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTL 336

Query: 1290 LEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGW 1111
            LEAMGKAGKPG ARSLFEEM+ +G+ PNEKTLTA++KIYGKARW +DAL LW+RM+ NGW
Sbjct: 337  LEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGW 396

Query: 1110 PMDFILYNTLLSMCADLGLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKA 931
            PMDFILYNTLL+MCAD+GL EEAE LF DMK S+  C+PDSWSYTAMLNIYGS G V+KA
Sbjct: 397  PMDFILYNTLLNMCADVGLIEEAETLFRDMKQSE-HCKPDSWSYTAMLNIYGSEGAVDKA 455

Query: 930  VSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSV 751
            + +FEEM +  ++LNVMGCTCLIQCLGKA  I+D+V+++ IS+++GV+PDDRLCGCLLSV
Sbjct: 456  MKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSV 515

Query: 750  VSFCENDVEVGMILGCLERANRSLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPF 571
            VS  +   +   +L CL+RAN  LVAF++L+ +E+   E +KEEFK I++   +EVRRPF
Sbjct: 516  VSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPF 575

Query: 570  CNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAREWTLNLRSLSVGAAQTAFEEW 391
            CNCLIDICR ++L ERAHELLY G +YG YP LH+KT  EW L++R+LSVGAA TA EEW
Sbjct: 576  CNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEW 635

Query: 390  MGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSEEKVGSFVA 211
            M  ++K++ REE LP LF A  G G HKF++GL  +  SHL+KL APF  SE+KVG F+A
Sbjct: 636  MTTLTKIVKREEALPDLFLAQTGTGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIA 695

Query: 210  TREELTSWVQSNVQSLAVS 154
            T+E+L SWVQSN  S +++
Sbjct: 696  TKEDLISWVQSNSPSASIA 714



 Score = 82.8 bits (203), Expect = 2e-13
 Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 7/359 (1%)
 Frame = -1

Query: 1596 AKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYEKGRASGWKP- 1420
            A+R N  D +    E M     +P  +T    L V   L   ++    +   +     P 
Sbjct: 129  AQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIKTQNLLPM 188

Query: 1419 DPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGLARSLF 1240
            + I ++V  K       +  I  +  +M   GVE + + Y+T++    K      A   F
Sbjct: 189  ETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWF 248

Query: 1239 EEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGWPMDFILYNTLLSMCADL 1060
            E M   G++P+E T +A++ +Y +     + + L+ER R+ GW  D I ++ L  M  + 
Sbjct: 249  ERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEA 308

Query: 1059 GLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKAVSMFEEMLRLRVKLNVM 880
            G  +    +  +MK      +P+   Y  +L   G  GK   A S+FEEM+   +  N  
Sbjct: 309  GDYDGIRYVLQEMKSLG--VQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEK 366

Query: 879  GCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSVVSFCENDVEVGMILGCL 700
              T +I+  GKA+  +D + ++    + G   D  L   LL++ +      E   +   +
Sbjct: 367  TLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDM 426

Query: 699  ERANR------SLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPFCNCLIDICRK 541
            +++        S  A + + G E   +++  + F++ ++   +E+    C CLI    K
Sbjct: 427  KQSEHCKPDSWSYTAMLNIYGSEGA-VDKAMKLFEE-MSKFGIELNVMGCTCLIQCLGK 483


>ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Glycine max]
          Length = 712

 Score =  733 bits (1891), Expect = 0.0
 Identities = 347/497 (69%), Positives = 417/497 (83%)
 Frame = -1

Query: 1650 IENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKV 1471
            I+N + LDNITYSTII+CAK+CN++DKAV WFERMYKTGLMPDEVTYSA+LDVYA+LGKV
Sbjct: 216  IDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKV 275

Query: 1470 EEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTL 1291
            EEV+SLYE+GRA+GWKPDPI FSVLGKMFGEAGDYDGIRYV QEM+SVGV+PNLVVYNTL
Sbjct: 276  EEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTL 335

Query: 1290 LEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGW 1111
            LEAMGKAGKPG AR LFEEM+ +G+VPNEKTLTA++KIYGKARW RDAL LW+RM+ NGW
Sbjct: 336  LEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGW 395

Query: 1110 PMDFILYNTLLSMCADLGLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKA 931
            PMDFILYNTLL+MCAD+GL EEAE LF DMK S   C+PDSWSYTAMLNIYGS G V+KA
Sbjct: 396  PMDFILYNTLLNMCADVGLVEEAETLFRDMKQS-VHCKPDSWSYTAMLNIYGSQGDVDKA 454

Query: 930  VSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSV 751
            + +F+EM +L V+LNVMG TCLIQCLG+A   +D+VR++ IS+++G++PDDRLCGCLLSV
Sbjct: 455  MKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSV 514

Query: 750  VSFCENDVEVGMILGCLERANRSLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPF 571
            VS  +   +   +L CL++AN  LVAF+ L+ +E    E +KEEFK I++  A+EVRRPF
Sbjct: 515  VSLSQGSNDEEKVLACLQQANPKLVAFIHLIEDEKTSFETVKEEFKGIMSNAAVEVRRPF 574

Query: 570  CNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAREWTLNLRSLSVGAAQTAFEEW 391
            CNCLIDICR ++L ERAHELLY G +YGLYPGLH+KT  EW L++RSLSVGAA TA EEW
Sbjct: 575  CNCLIDICRNKDLLERAHELLYLGTLYGLYPGLHNKTVEEWCLDVRSLSVGAALTALEEW 634

Query: 390  MGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSEEKVGSFVA 211
            M  ++K++ REE LP+LF A  G G HKF++GL  +  SHL+KL APF  SEEKVG F+A
Sbjct: 635  MWTLTKIVKREETLPELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKVGCFIA 694

Query: 210  TREELTSWVQSNVQSLA 160
            +RE+L SWVQS   + A
Sbjct: 695  SREDLVSWVQSKSTAAA 711



 Score = 79.0 bits (193), Expect = 4e-12
 Identities = 57/215 (26%), Positives = 98/215 (45%)
 Frame = -1

Query: 1395 GKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGAGV 1216
            GK FG   D      +  +M   GV  + + Y+T++    K      A   FE M   G+
Sbjct: 202  GKQFGLIED------LAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGL 255

Query: 1215 VPNEKTLTALVKIYGKARWGRDALGLWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEK 1036
            +P+E T +A++ +Y +     + + L+ER R+ GW  D I ++ L  M  + G  +    
Sbjct: 256  MPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRY 315

Query: 1035 LFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKAVSMFEEMLRLRVKLNVMGCTCLIQC 856
            +F +M+      +P+   Y  +L   G  GK   A  +FEEM+   +  N    T +I+ 
Sbjct: 316  VFQEMESVG--VQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKI 373

Query: 855  LGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSV 751
             GKA+   D + ++    + G   D  L   LL++
Sbjct: 374  YGKARWSRDALELWQRMKENGWPMDFILYNTLLNM 408


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g46580, chloroplastic; Flags: Precursor
            gi|8885599|dbj|BAA97529.1| unnamed protein product
            [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 711

 Score =  731 bits (1888), Expect = 0.0
 Identities = 345/499 (69%), Positives = 422/499 (84%)
 Frame = -1

Query: 1650 IENNIELDNITYSTIITCAKRCNMFDKAVEWFERMYKTGLMPDEVTYSAVLDVYAKLGKV 1471
            +++ +ELDNITYSTIITCAKRCN+++KA+EWFERMYKTGLMPDEVTYSA+LDVY+K GKV
Sbjct: 213  VKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKV 272

Query: 1470 EEVLSLYEKGRASGWKPDPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTL 1291
            EEVLSLYE+  A+GWKPD IAFSVLGKMFGEAGDYDGIRYVLQEMKS+ V+PN+VVYNTL
Sbjct: 273  EEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTL 332

Query: 1290 LEAMGKAGKPGLARSLFEEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGW 1111
            LEAMG+AGKPGLARSLF EM+ AG+ PNEKTLTALVKIYGKARW RDAL LWE M++  W
Sbjct: 333  LEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKW 392

Query: 1110 PMDFILYNTLLSMCADLGLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKA 931
            PMDFILYNTLL+MCAD+GLEEEAE+LF DMK S  +CRPD++SYTAMLNIYGSGGK EKA
Sbjct: 393  PMDFILYNTLLNMCADIGLEEEAERLFNDMKES-VQCRPDNFSYTAMLNIYGSGGKAEKA 451

Query: 930  VSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSV 751
            + +FEEML+  V++NVMGCTCL+QCLGKAKRI+DVV ++ +S+ +GV+PDDRLCGCLLSV
Sbjct: 452  MELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSV 511

Query: 750  VSFCENDVEVGMILGCLERANRSLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPF 571
            ++ CE+  +   ++ CLERAN+ LV FV L+ +E    E +KEEFK ++NA  +E RRPF
Sbjct: 512  MALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPF 571

Query: 570  CNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAREWTLNLRSLSVGAAQTAFEEW 391
            CNCLIDICR  N HERAHELLY G ++GLYPGLH+KT +EW+L++RSLSVGAA+TA EEW
Sbjct: 572  CNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEW 631

Query: 390  MGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSEEKVGSFVA 211
            M  ++ ++ R+E LP+LF A  G GTH+FS+GLAN+   HL++L APF  S ++ G FVA
Sbjct: 632  MRTLANIIKRQEELPELFLAQTGTGTHRFSQGLANSFALHLQQLSAPFRQS-DRPGIFVA 690

Query: 210  TREELTSWVQSNVQSLAVS 154
            T+E+L SW++S    L  S
Sbjct: 691  TKEDLVSWLESKFPPLVTS 709



 Score = 92.8 bits (229), Expect = 2e-16
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 6/299 (2%)
 Frame = -1

Query: 1419 DPIAFSVLGKMFGEAGDYDGIRYVLQEMKSVGVEPNLVVYNTLLEAMGKAGKPGLARSLF 1240
            + I ++V  K       +  I  +  EM   GVE + + Y+T++    +      A   F
Sbjct: 185  ETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWF 244

Query: 1239 EEMVGAGVVPNEKTLTALVKIYGKARWGRDALGLWERMRSNGWPMDFILYNTLLSMCADL 1060
            E M   G++P+E T +A++ +Y K+    + L L+ER  + GW  D I ++ L  M  + 
Sbjct: 245  ERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEA 304

Query: 1059 GLEEEAEKLFGDMKGSDSKCRPDSWSYTAMLNIYGSGGKVEKAVSMFEEMLRLRVKLNVM 880
            G  +    +  +MK  D K  P+   Y  +L   G  GK   A S+F EML   +  N  
Sbjct: 305  GDYDGIRYVLQEMKSMDVK--PNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEK 362

Query: 879  GCTCLIQCLGKAKRIEDVVRIYGISMDKGVQPDDRLCGCLLSVVSFCENDVEVGMILGCL 700
              T L++  GKA+   D ++++     K    D  L   LL++ +    + E   +   +
Sbjct: 363  TLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDM 422

Query: 699  ERA------NRSLVAFVKLLGEEDVRLERIKEEFKQILNAVALEVRRPFCNCLIDICRK 541
            + +      N S  A + + G    + E+  E F+++L A  ++V    C CL+    K
Sbjct: 423  KESVQCRPDNFSYTAMLNIYGSGG-KAEKAMELFEEMLKA-GVQVNVMGCTCLVQCLGK 479