BLASTX nr result

ID: Coptis23_contig00011709 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011709
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21881.3| unnamed protein product [Vitis vinifera]              145   3e-33
emb|CAN78517.1| hypothetical protein VITISV_039749 [Vitis vinifera]   145   3e-33
ref|XP_002274918.1| PREDICTED: uncharacterized protein LOC100262...   140   1e-31
ref|XP_002310406.1| predicted protein [Populus trichocarpa] gi|2...   140   1e-31
ref|XP_002327911.1| predicted protein [Populus trichocarpa] gi|2...   139   3e-31

>emb|CBI21881.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  145 bits (366), Expect = 3e-33
 Identities = 80/124 (64%), Positives = 98/124 (79%), Gaps = 15/124 (12%)
 Frame = -3

Query: 363 ISTAEMVRKFESSTR-------DSSILHVNATS----KPKLTLTRPKEPDLETSHRARSV 217
           +S AEM+RKF+S+TR       +SS+ H +ATS    +PKLTLTRPKEP+LET++R RSV
Sbjct: 338 VSMAEMMRKFQSNTRGMSLPNLNSSLSHGDATSIIQRRPKLTLTRPKEPELETTNRVRSV 397

Query: 216 RVKSCAELEEEMMANI----ARPVNKKMLEASTLPALPRSTPQLPEFQEFHLKTTERANQ 49
           RVKS AELEEEMMA I    ARP+NKK+LEA+TLPA+PRS PQLP FQEFHL+T  RANQ
Sbjct: 398 RVKSTAELEEEMMAKIPKFKARPLNKKILEAATLPAVPRSVPQLPVFQEFHLETMTRANQ 457

Query: 48  NVKT 37
           N ++
Sbjct: 458 NAES 461



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
 Frame = -3

Query: 270 LTRPKEPDLETSHRARSVRVKSCAELEEEMMANI----ARPVNKKMLEA-STLPALPRST 106
           LT PK P L+TS RAR  RVKS  ELE+E +  +    ARP+NKK+ E+   L     + 
Sbjct: 482 LTEPKTPLLQTSLRARPPRVKSSVELEQEALEKVLPFKARPLNKKIFESKGGLGIFCNTK 541

Query: 105 PQLPEFQEFHLKTTER 58
            Q+ + QEFH  T ER
Sbjct: 542 RQVTKPQEFHFATDER 557


>emb|CAN78517.1| hypothetical protein VITISV_039749 [Vitis vinifera]
          Length = 941

 Score =  145 bits (366), Expect = 3e-33
 Identities = 80/124 (64%), Positives = 98/124 (79%), Gaps = 15/124 (12%)
 Frame = -3

Query: 363 ISTAEMVRKFESSTR-------DSSILHVNATS----KPKLTLTRPKEPDLETSHRARSV 217
           +S AEM+RKF+S+TR       +SS+ H +ATS    +PKLTLTRPKEP+LET++R RSV
Sbjct: 338 VSMAEMMRKFQSNTRGMSLPNLNSSLSHGDATSIIQRRPKLTLTRPKEPELETTNRVRSV 397

Query: 216 RVKSCAELEEEMMANI----ARPVNKKMLEASTLPALPRSTPQLPEFQEFHLKTTERANQ 49
           RVKS AELEEEMMA I    ARP+NKK+LEA+TLPA+PRS PQLP FQEFHL+T  RANQ
Sbjct: 398 RVKSTAELEEEMMAKIPKFKARPLNKKILEAATLPAVPRSVPQLPVFQEFHLETMTRANQ 457

Query: 48  NVKT 37
           N ++
Sbjct: 458 NAES 461



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
 Frame = -3

Query: 270 LTRPKEPDLETSHRARSVRVKSCAELEEEMMANI----ARPVNKKMLEA-STLPALPRST 106
           LT PK P L+TS RAR  RVKS  ELE+E +  +    ARP+NKK+ E+   L     + 
Sbjct: 482 LTEPKTPLLQTSLRARPPRVKSSVELEQEALEKVLPFKARPLNKKIFESKGGLGIFCNTK 541

Query: 105 PQLPEFQEFHLKTTER 58
            Q+ + QEFH  T ER
Sbjct: 542 RQVTKPQEFHFATDER 557


>ref|XP_002274918.1| PREDICTED: uncharacterized protein LOC100262517 [Vitis vinifera]
          Length = 805

 Score =  140 bits (353), Expect = 1e-31
 Identities = 75/113 (66%), Positives = 90/113 (79%), Gaps = 4/113 (3%)
 Frame = -3

Query: 363 ISTAEMVRKFESSTRDSSILHVNATSKPKLTLTRPKEPDLETSHRARSVRVKSCAELEEE 184
           +S AEM+RKF+S+TR   I       +PKLTLTRPKEP+LET++R RSVRVKS AELEEE
Sbjct: 338 VSMAEMMRKFQSNTRGMFIQR-----RPKLTLTRPKEPELETTNRVRSVRVKSTAELEEE 392

Query: 183 MMANI----ARPVNKKMLEASTLPALPRSTPQLPEFQEFHLKTTERANQNVKT 37
           MMA I    ARP+NKK+LEA+TLPA+PRS PQLP FQEFHL+T  RANQN ++
Sbjct: 393 MMAKIPKFKARPLNKKILEAATLPAVPRSVPQLPVFQEFHLETMTRANQNAES 445



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
 Frame = -3

Query: 270 LTRPKEPDLETSHRARSVRVKSCAELEEEMMANI----ARPVNKKMLEA-STLPALPRST 106
           LT PK P L+TS RAR  RVKS  ELE+E +  +    ARP+NKK+ E+   L     + 
Sbjct: 466 LTEPKTPLLQTSLRARPPRVKSSVELEQEALEKVLPFKARPLNKKIFESKGGLGIFCNTK 525

Query: 105 PQLPEFQEFHLKTTER 58
            Q+ + QEFH  T ER
Sbjct: 526 RQVTKPQEFHFATDER 541


>ref|XP_002310406.1| predicted protein [Populus trichocarpa] gi|222853309|gb|EEE90856.1|
           predicted protein [Populus trichocarpa]
          Length = 833

 Score =  140 bits (352), Expect = 1e-31
 Identities = 73/117 (62%), Positives = 89/117 (76%), Gaps = 8/117 (6%)
 Frame = -3

Query: 363 ISTAEMVRKFESSTRDSSILHVNATS----KPKLTLTRPKEPDLETSHRARSVRVKSCAE 196
           +S AEM++KF+S+TR+ S+ H    S    KPKLTLTRPKEP+ ET+ R RSV++KS AE
Sbjct: 343 VSMAEMMKKFQSNTRELSLPHDGPASVIQRKPKLTLTRPKEPEFETAQRVRSVKIKSTAE 402

Query: 195 LEEEMMANI----ARPVNKKMLEASTLPALPRSTPQLPEFQEFHLKTTERANQNVKT 37
           +EEEMMA I    ARP+NKK+LEA TLPALPRSTP  PEFQEFH  T  RANQN ++
Sbjct: 403 IEEEMMAKIPKFKARPLNKKILEAPTLPALPRSTPHRPEFQEFHFVTAARANQNAES 459


>ref|XP_002327911.1| predicted protein [Populus trichocarpa] gi|222837320|gb|EEE75699.1|
           predicted protein [Populus trichocarpa]
          Length = 811

 Score =  139 bits (349), Expect = 3e-31
 Identities = 76/124 (61%), Positives = 93/124 (75%), Gaps = 15/124 (12%)
 Frame = -3

Query: 363 ISTAEMVRKFESSTR-------DSSILHVNATS----KPKLTLTRPKEPDLETSHRARSV 217
           +STAEM+ KF+S+TR       ++SI H    S    KPKLTLTRPKEP+ ET+ R RSV
Sbjct: 330 VSTAEMMNKFQSNTRGLSMPRFNNSISHDGPASVIQRKPKLTLTRPKEPEFETAQRVRSV 389

Query: 216 RVKSCAELEEEMMANI----ARPVNKKMLEASTLPALPRSTPQLPEFQEFHLKTTERANQ 49
           ++KS AE+EEEMMA I    ARP+NKK+LEA+TLPALPRSTPQ PEF EFHL+T  RANQ
Sbjct: 390 KIKSSAEIEEEMMAKIPKFKARPLNKKILEAATLPALPRSTPQPPEFLEFHLETAARANQ 449

Query: 48  NVKT 37
           N ++
Sbjct: 450 NAES 453



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
 Frame = -3

Query: 330 SSTRDSSILHVNATSKPKLTLTRPKEPDLETSHRARSVRVKSCAELEEEMMANI----AR 163
           +S   + + H +   KP   LT PK P L TS RAR  RVKS  ELE+E +       AR
Sbjct: 454 TSVASTEVSHQSNLWKPH-HLTEPKTPVLHTSLRARPARVKSSLELEKEEIEKFPKFKAR 512

Query: 162 PVNKKMLEA-STLPALPRSTPQLPEFQEFHLKTTER 58
           P+NKK+ E+   +     +  Q+   QEFH  T ER
Sbjct: 513 PLNKKIFESKGAMGIFCHAKKQVTVPQEFHFATNER 548


Top