BLASTX nr result
ID: Coptis23_contig00011684
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00011684
(1536 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002320399.1| predicted protein [Populus trichocarpa] gi|2... 612 e-173
ref|XP_002512794.1| dead box ATP-dependent RNA helicase, putativ... 609 e-172
ref|XP_002276467.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 608 e-171
ref|XP_003548927.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 575 e-161
ref|XP_003519940.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 570 e-160
>ref|XP_002320399.1| predicted protein [Populus trichocarpa] gi|222861172|gb|EEE98714.1|
predicted protein [Populus trichocarpa]
Length = 524
Score = 612 bits (1578), Expect = e-173
Identities = 303/425 (71%), Positives = 359/425 (84%)
Frame = +1
Query: 19 LTSDQIALLRSKIEIRVKGDSIPPPILAFSSCNLPEKLQLNLEAAGYEVPTPVQMQSIPA 198
LTSDQ LLR K+EI VKGDS+P PIL+FSSCNLPEKL N++ GY++PTP+QMQ I A
Sbjct: 98 LTSDQTELLRRKLEIHVKGDSVPDPILSFSSCNLPEKLLHNIQTLGYDMPTPIQMQGIAA 157
Query: 199 ALTGKNLLVSAETGSGKTASFLVPVVSLCTAFRSSNHAKVKNPIAMVLAPTRELCVQIEE 378
ALTGK+LL SA+TGSGKTASFLVPVVS C FR N +K K P+AMVL PTRELC+Q+EE
Sbjct: 158 ALTGKSLLASADTGSGKTASFLVPVVSRCATFRHGNISKSKKPLAMVLTPTRELCIQVEE 217
Query: 379 QAKLFGRGLPFKTALVVGGEAMAGQIYRIQQGVELIVGTPGRLIDLFTKHDIXXXXXXXX 558
QAKL G+GLPFKTALV+GG+AM Q+YRIQQGVELIVGTPGRLIDL KHDI
Sbjct: 218 QAKLLGKGLPFKTALVIGGDAMPRQLYRIQQGVELIVGTPGRLIDLLAKHDIELDDIMIL 277
Query: 559 XXXXXXCMLQRGFRDQVMQIFQALFKPQILMYSATISSEVEKMASSMAKDLIYISIGKPN 738
CMLQ+GFRDQVMQIF+AL +PQ+LMYSAT+S EVEKMASSMAKDLI++SIG+PN
Sbjct: 278 VLDEVDCMLQQGFRDQVMQIFRALSQPQVLMYSATMSQEVEKMASSMAKDLIFVSIGQPN 337
Query: 739 RPIESVKQVIIWVESKKKKQKLFEIITSQQHFKPPVVVFVDSKLGAELLSEAITVTTGIK 918
RP ++VKQ+ IWVESK+KKQKLF+I+ S+QHF PP +V+V S++GA+LLS AITVTTG+K
Sbjct: 338 RPSKAVKQLAIWVESKQKKQKLFDILMSKQHFLPPSIVYVGSRIGADLLSNAITVTTGLK 397
Query: 919 TLSIHGDKPMKERRETLRQFLMGEVSVIVATGVLGRGVDLLKVRQVIVFDMPNSIKEYIH 1098
LSIHG+K MKERRE ++ FL+GEV ++VATGVLGRGVDLL VRQVIVFDMPN IKEY+H
Sbjct: 398 ALSIHGEKSMKERREIMKSFLVGEVPLVVATGVLGRGVDLLGVRQVIVFDMPNCIKEYVH 457
Query: 1099 QIGRASRLGEEGVAMAFVNEENKNLFQELVEVLKSSRAVVPRELANSRYTMASYSIGKRQ 1278
QIGRASR+GE+G ++ FVNEEN+NLF +LVEVLKSS AV+PREL NSRY S+ +GK Q
Sbjct: 458 QIGRASRMGEDGTSIVFVNEENRNLFPDLVEVLKSSGAVIPRELVNSRYVKRSFPMGKGQ 517
Query: 1279 KKRKY 1293
+KRKY
Sbjct: 518 RKRKY 522
>ref|XP_002512794.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547805|gb|EEF49297.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 514
Score = 609 bits (1571), Expect = e-172
Identities = 305/431 (70%), Positives = 364/431 (84%)
Frame = +1
Query: 1 KSGAQHLTSDQIALLRSKIEIRVKGDSIPPPILAFSSCNLPEKLQLNLEAAGYEVPTPVQ 180
++G LT+DQ LLR +EI VKG+ +P PIL+FSSCNLP+KL LNLEAAGY++PTPVQ
Sbjct: 88 ENGTSSLTNDQTELLRRTLEIHVKGELVPDPILSFSSCNLPQKLLLNLEAAGYDLPTPVQ 147
Query: 181 MQSIPAALTGKNLLVSAETGSGKTASFLVPVVSLCTAFRSSNHAKVKNPIAMVLAPTREL 360
MQ+IP AL+GK+LL SA+TGSGKTAS+LVP++S C ++R H+ + P+AMVL PTREL
Sbjct: 148 MQAIPTALSGKSLLASADTGSGKTASYLVPIISSCASYRLQ-HSSDRKPLAMVLTPTREL 206
Query: 361 CVQIEEQAKLFGRGLPFKTALVVGGEAMAGQIYRIQQGVELIVGTPGRLIDLFTKHDIXX 540
C+Q+E+QAKLFG+GLPFKTALVVGG+AMAGQ+YRIQQGVELIVGTPGRLIDL TKHDI
Sbjct: 207 CIQVEDQAKLFGKGLPFKTALVVGGDAMAGQLYRIQQGVELIVGTPGRLIDLLTKHDIEL 266
Query: 541 XXXXXXXXXXXXCMLQRGFRDQVMQIFQALFKPQILMYSATISSEVEKMASSMAKDLIYI 720
CMLQRGFRDQVMQIF AL +PQ+L+YSAT++ EVEKMASSMAKD+ +
Sbjct: 267 DNMIIFVIDEVDCMLQRGFRDQVMQIFWALSQPQVLLYSATVTQEVEKMASSMAKDMALV 326
Query: 721 SIGKPNRPIESVKQVIIWVESKKKKQKLFEIITSQQHFKPPVVVFVDSKLGAELLSEAIT 900
SIG+PNRP ++VKQ+ IWVE K+KKQKLF+I+ S+QHF PP VV+V S+LGA+LLS AIT
Sbjct: 327 SIGQPNRPSKAVKQLAIWVEPKQKKQKLFDILMSKQHFMPPAVVYVGSRLGADLLSNAIT 386
Query: 901 VTTGIKTLSIHGDKPMKERRETLRQFLMGEVSVIVATGVLGRGVDLLKVRQVIVFDMPNS 1080
VTTG K+LSIHG+K MKERRE ++ FL+GEV+VIVATGVLGRGVDL VRQVI+FDMPNS
Sbjct: 387 VTTGWKSLSIHGEKSMKERREIMKSFLVGEVTVIVATGVLGRGVDLFGVRQVIIFDMPNS 446
Query: 1081 IKEYIHQIGRASRLGEEGVAMAFVNEENKNLFQELVEVLKSSRAVVPRELANSRYTMASY 1260
IKEYIHQIGRASR+GE G+A+ FVNEENKNLF E +EVLKSS AV+PRELANSR Y
Sbjct: 447 IKEYIHQIGRASRMGEGGIAIVFVNEENKNLFPEFIEVLKSSAAVIPRELANSR-----Y 501
Query: 1261 SIGKRQKKRKY 1293
S+GK QKKRKY
Sbjct: 502 SVGKGQKKRKY 512
>ref|XP_002276467.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Vitis
vinifera]
Length = 540
Score = 608 bits (1568), Expect = e-171
Identities = 308/434 (70%), Positives = 365/434 (84%), Gaps = 3/434 (0%)
Frame = +1
Query: 1 KSGAQHLTSDQIALLRSKIEIRVKGDSIPPPILAFSSCNLPEKLQLNLEAAGYEVPTPVQ 180
KSG+Q LT Q +LR ++EI V+GD PIL+FSSCNLP+KL N+EAAGYE+PTPVQ
Sbjct: 105 KSGSQSLTGSQTEMLRRRLEICVRGDFDLSPILSFSSCNLPQKLLQNIEAAGYEIPTPVQ 164
Query: 181 MQSIPAALTGKNLLVSAETGSGKTASFLVPVVSLCTAFRSSNHAKVKNPIAMVLAPTREL 360
MQ+IPAAL GKNLLVSA+TGSGKTASFLVP+VS CT+ R + KNP+AMVL PTREL
Sbjct: 165 MQAIPAALVGKNLLVSADTGSGKTASFLVPIVSRCTSIRPDHSPNQKNPLAMVLTPTREL 224
Query: 361 CVQIEEQAKLFGRGLPFKTALVVGGEAMAGQIYRIQQGVELIVGTPGRLIDLFTKHDIXX 540
C+Q+EEQAKL G+GLPFKTALVVGG+AM Q++RIQQGVELIVGTPGRLIDL +KH+I
Sbjct: 225 CMQVEEQAKLLGKGLPFKTALVVGGDAMPRQLHRIQQGVELIVGTPGRLIDLLSKHEIEL 284
Query: 541 XXXXXXXXXXXXCMLQRGFRDQVMQIFQALFKPQILMYSATISSEVEKMASSMAKDLIYI 720
CML+RGFRDQVMQI++AL +PQ+LMYSATIS EVEK+ASSMAKD+I I
Sbjct: 285 DDVFMLVLDEVDCMLERGFRDQVMQIYRALSQPQVLMYSATISQEVEKVASSMAKDIIVI 344
Query: 721 SIGKPNRPIESVKQVIIWVESKKKKQKLFEIITSQQHFKPPVVVFVDSKLGAELLSEAIT 900
S+GK NRP +VKQ+ IWVESK+KKQKLF+I+TS+QHF PPVVVFV S+LGA+LL+EAIT
Sbjct: 345 SVGKSNRPNIAVKQLAIWVESKQKKQKLFDILTSKQHFTPPVVVFVGSRLGADLLTEAIT 404
Query: 901 VTTGIKTLSIHGDKPMKERRETLRQFLMGEVSVIVATGVLGRGVDLLKVRQVIVFDMPNS 1080
+TTG+K LSIHG+K MKERRE + FL+GEV V+VATGVL RGVDLL VRQVIVFDMPNS
Sbjct: 405 ITTGLKALSIHGEKSMKERREIMSSFLVGEVPVMVATGVLSRGVDLLSVRQVIVFDMPNS 464
Query: 1081 IKEYIHQIGRASRLGEEGVAMAFVNEENKNLFQELVEVLKSSRAVVPRELANSRYTMASY 1260
IKEY+HQIGRASRLGEEG A+ F+NEEN+NLF ELVE+LKSS A +PRELANSRY + S
Sbjct: 465 IKEYVHQIGRASRLGEEGTAILFLNEENRNLFPELVEILKSSGAAIPRELANSRYRLGSV 524
Query: 1261 SIGK---RQKKRKY 1293
++G+ RQKKRK+
Sbjct: 525 NVGRGQIRQKKRKH 538
>ref|XP_003548927.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Glycine max]
Length = 528
Score = 575 bits (1481), Expect = e-161
Identities = 288/431 (66%), Positives = 356/431 (82%)
Frame = +1
Query: 1 KSGAQHLTSDQIALLRSKIEIRVKGDSIPPPILAFSSCNLPEKLQLNLEAAGYEVPTPVQ 180
KSG + SD LR K++IRVKGD + P +L+FS+CNLP+KL N+EAAGYE+PTPVQ
Sbjct: 101 KSGTVSMGSD----LRKKLDIRVKGDVVAP-VLSFSACNLPDKLLHNIEAAGYEMPTPVQ 155
Query: 181 MQSIPAALTGKNLLVSAETGSGKTASFLVPVVSLCTAFRSSNHAKVKNPIAMVLAPTREL 360
MQ+IPAALTGK++LV A+TGSGK+ASFL+P+VS C R + K P+AMVL PTREL
Sbjct: 156 MQAIPAALTGKSMLVLADTGSGKSASFLIPIVSRCVIHRRQYFSGKKKPLAMVLTPTREL 215
Query: 361 CVQIEEQAKLFGRGLPFKTALVVGGEAMAGQIYRIQQGVELIVGTPGRLIDLFTKHDIXX 540
C+Q+EE AKL G+GLPFKTALVVGG+AMAGQ++RIQQGVELIVGTPGRL+DL KH+I
Sbjct: 216 CIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLMKHEIDL 275
Query: 541 XXXXXXXXXXXXCMLQRGFRDQVMQIFQALFKPQILMYSATISSEVEKMASSMAKDLIYI 720
CMLQRGFRDQVMQI++AL +PQ+LMYSAT+S+++EKM +++AK ++ +
Sbjct: 276 DDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGMVVM 335
Query: 721 SIGKPNRPIESVKQVIIWVESKKKKQKLFEIITSQQHFKPPVVVFVDSKLGAELLSEAIT 900
SIG+PN P ++VKQ+ IWVESK+KKQKLFEI+ S++HFKPPVVV+V S+LGA+LL+ AIT
Sbjct: 336 SIGEPNTPNKAVKQLAIWVESKQKKQKLFEILASKKHFKPPVVVYVGSRLGADLLANAIT 395
Query: 901 VTTGIKTLSIHGDKPMKERRETLRQFLMGEVSVIVATGVLGRGVDLLKVRQVIVFDMPNS 1080
V TGIK +SIHG+K MKERRET++ FL+GEV V+VATGVLGRGVDLL VRQVIVFDMPN+
Sbjct: 396 VATGIKAVSIHGEKSMKERRETMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNN 455
Query: 1081 IKEYIHQIGRASRLGEEGVAMAFVNEENKNLFQELVEVLKSSRAVVPRELANSRYTMASY 1260
IKEY+HQIGRASR+GEEG + FVNEENKN+F EL++VLKS A VPRELANSRY +
Sbjct: 456 IKEYVHQIGRASRMGEEGQGIVFVNEENKNVFAELIDVLKSGGAAVPRELANSRYATRVF 515
Query: 1261 SIGKRQKKRKY 1293
S GK KKRK+
Sbjct: 516 SGGKGSKKRKH 526
>ref|XP_003519940.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Glycine max]
Length = 528
Score = 570 bits (1470), Expect = e-160
Identities = 284/431 (65%), Positives = 355/431 (82%)
Frame = +1
Query: 1 KSGAQHLTSDQIALLRSKIEIRVKGDSIPPPILAFSSCNLPEKLQLNLEAAGYEVPTPVQ 180
+SG + SD LR K++I VKGD + P +L+FS+CNLP+KL N+EAAGYE+PTPVQ
Sbjct: 101 ESGTASMASD----LRKKLDIHVKGDVVAP-VLSFSACNLPDKLLHNIEAAGYEMPTPVQ 155
Query: 181 MQSIPAALTGKNLLVSAETGSGKTASFLVPVVSLCTAFRSSNHAKVKNPIAMVLAPTREL 360
MQ+IPAALTGK++L+ A+TGSGK+ASFL+P+VS C R + KNP+A+VL PTREL
Sbjct: 156 MQAIPAALTGKSMLLLADTGSGKSASFLIPIVSRCAIHRRQYVSDKKNPLALVLTPTREL 215
Query: 361 CVQIEEQAKLFGRGLPFKTALVVGGEAMAGQIYRIQQGVELIVGTPGRLIDLFTKHDIXX 540
C+Q+EE AKL G+G+PFKTALVVGG+AMAGQ++RIQQGVELIVGTPGRL+DL TKH+I
Sbjct: 216 CMQVEEHAKLLGKGMPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLTKHEIDL 275
Query: 541 XXXXXXXXXXXXCMLQRGFRDQVMQIFQALFKPQILMYSATISSEVEKMASSMAKDLIYI 720
CMLQRGFRDQVMQI++AL +PQ+LMYSAT+S+++EKM +++ K + I
Sbjct: 276 DDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLVKGTVVI 335
Query: 721 SIGKPNRPIESVKQVIIWVESKKKKQKLFEIITSQQHFKPPVVVFVDSKLGAELLSEAIT 900
S+G+PN P ++VKQ+ IWVESK+KKQKLFEI+ S++HFKPPVVV+V S+LGA+LL+ AIT
Sbjct: 336 SVGEPNTPNKAVKQLAIWVESKEKKQKLFEILESKKHFKPPVVVYVGSRLGADLLANAIT 395
Query: 901 VTTGIKTLSIHGDKPMKERRETLRQFLMGEVSVIVATGVLGRGVDLLKVRQVIVFDMPNS 1080
V+TGIK +SIHG+K MKERRET++ L+GEV V+VATGVLGRGVDLL VRQVIVFDMPN+
Sbjct: 396 VSTGIKAVSIHGEKSMKERRETMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNN 455
Query: 1081 IKEYIHQIGRASRLGEEGVAMAFVNEENKNLFQELVEVLKSSRAVVPRELANSRYTMASY 1260
IKEY+HQIGRASR+GEEG + FVNEENKN+F EL+EVLKS A VPRELANSRY +
Sbjct: 456 IKEYVHQIGRASRMGEEGQGIVFVNEENKNIFAELIEVLKSGGAAVPRELANSRYATGVF 515
Query: 1261 SIGKRQKKRKY 1293
S GK KKRK+
Sbjct: 516 SGGKGSKKRKH 526