BLASTX nr result

ID: Coptis23_contig00011614 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011614
         (1163 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597997.1| Protein TRIGALACTOSYLDIACYLGLYCEROL [Medicag...   432   e-119
ref|XP_002265320.2| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCER...   431   e-118
ref|XP_002515591.1| Inner membrane protein yrbE, putative [Ricin...   427   e-117
ref|XP_003536225.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCER...   424   e-116
ref|XP_003555520.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCER...   422   e-116

>ref|XP_003597997.1| Protein TRIGALACTOSYLDIACYLGLYCEROL [Medicago truncatula]
            gi|355487045|gb|AES68248.1| Protein
            TRIGALACTOSYLDIACYLGLYCEROL [Medicago truncatula]
          Length = 355

 Score =  432 bits (1112), Expect = e-119
 Identities = 226/300 (75%), Positives = 245/300 (81%), Gaps = 5/300 (1%)
 Frame = +1

Query: 169  KQGRLFAVTPNTEDGHVLI-----HXXXXXXXXXXXXXXXSKWSPPRSLWRGLSVLILAG 333
            K  RLF V PNT+DGH                        S WSPPR LWRGLSVLILAG
Sbjct: 57   KPNRLF-VLPNTDDGHPTASTMDDEMNTNHAPNVISPMFLSNWSPPRYLWRGLSVLILAG 115

Query: 334  QVIIRIFQGKVHRRNTLQQLERVGPKSVGVCLLTATFVGMAFTIQFVREFTRLGLNRSVG 513
            QVI++I +GKVH RNTLQQLERVGPKSVGVCLLT+ FVGMAFTIQFVREFTRLGLNRSVG
Sbjct: 116  QVIMKILKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVG 175

Query: 514  GVLALAFIRELSPVITSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLVTPRV 693
            GVLALAF RELSPV+T+IVVAGRIGSAFAAELGTMQVSEQ DTLRVLG+DPVDYLVTPRV
Sbjct: 176  GVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGSDPVDYLVTPRV 235

Query: 694  IACCVALPILTLICFTVGLASSAILADGVYGVSINIILESARRALNPWDIISAMIKSQVF 873
            IA C+ALP+LTL+CFT+GLASSA+LADGVYG+SINIIL+SA+R+L  WDIISAMIKS  F
Sbjct: 236  IASCIALPLLTLLCFTLGLASSALLADGVYGISINIILDSAQRSLRAWDIISAMIKSGAF 295

Query: 874  GGIISIVSCAWGVTTLGGAKGVGEXXXXXXXXXXXXIFIADFFLSCCFFQGAGDSLKNCM 1053
            G IISIVSCAWGVTT+GGAKGVGE            IFIADF LSCCFFQGAGD LKNC+
Sbjct: 296  GAIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADFALSCCFFQGAGDQLKNCV 355


>ref|XP_002265320.2| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like
            [Vitis vinifera]
          Length = 478

 Score =  431 bits (1108), Expect = e-118
 Identities = 230/318 (72%), Positives = 255/318 (80%), Gaps = 9/318 (2%)
 Frame = +1

Query: 127  GSVSFKGP-RSLKLH---KQGRLFAVTPNTEDGHVLI-----HXXXXXXXXXXXXXXXSK 279
            G VSF G  ++ K H   ++ RLF++ P+ +DGH  +     +               SK
Sbjct: 162  GRVSFTGKSQTCKFHIPVQRTRLFSI-PSADDGHPSVSVSEENSDTNHAFNHEEESLLSK 220

Query: 280  WSPPRSLWRGLSVLILAGQVIIRIFQGKVHRRNTLQQLERVGPKSVGVCLLTATFVGMAF 459
            WSPPR LWRGLSV I+AGQVIIRI  GKVH  NTLQQLERVGP+SVGVC+LTA FVGMAF
Sbjct: 221  WSPPRYLWRGLSVFIMAGQVIIRILTGKVHWVNTLQQLERVGPRSVGVCILTAAFVGMAF 280

Query: 460  TIQFVREFTRLGLNRSVGGVLALAFIRELSPVITSIVVAGRIGSAFAAELGTMQVSEQTD 639
            TIQFVREFTRLGLNRSVGGVLALAF RELSPV+TSIVVAGRIGSAFAAELGTMQVSEQTD
Sbjct: 281  TIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTSIVVAGRIGSAFAAELGTMQVSEQTD 340

Query: 640  TLRVLGTDPVDYLVTPRVIACCVALPILTLICFTVGLASSAILADGVYGVSINIILESAR 819
            TLRVLGT+PVDYLVTPRVIA C+ALP LTL+CFTVG+ASSA+LAD VYG+SINIIL+SA+
Sbjct: 341  TLRVLGTNPVDYLVTPRVIASCIALPFLTLLCFTVGMASSALLADSVYGISINIILDSAQ 400

Query: 820  RALNPWDIISAMIKSQVFGGIISIVSCAWGVTTLGGAKGVGEXXXXXXXXXXXXIFIADF 999
            RALN WDIISAMIKS  FGGIIS VSCAWGVTT+GGAKGVGE            IFIADF
Sbjct: 401  RALNSWDIISAMIKSVAFGGIISTVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADF 460

Query: 1000 FLSCCFFQGAGDSLKNCM 1053
             LS CFFQGAGD+LKNC+
Sbjct: 461  ALSYCFFQGAGDALKNCV 478


>ref|XP_002515591.1| Inner membrane protein yrbE, putative [Ricinus communis]
            gi|223545535|gb|EEF47040.1| Inner membrane protein yrbE,
            putative [Ricinus communis]
          Length = 350

 Score =  427 bits (1099), Expect = e-117
 Identities = 228/306 (74%), Positives = 245/306 (80%), Gaps = 5/306 (1%)
 Frame = +1

Query: 151  RSLKLHKQGRLFAVTPNTEDGHVLI-----HXXXXXXXXXXXXXXXSKWSPPRSLWRGLS 315
            R L   +Q +LF + PN  DGH  +                     SKWSPP  LWRGLS
Sbjct: 46   RLLSTEQQTKLFVI-PNANDGHPSVTLLDEEPNSNHAPSSEAETFLSKWSPPGYLWRGLS 104

Query: 316  VLILAGQVIIRIFQGKVHRRNTLQQLERVGPKSVGVCLLTATFVGMAFTIQFVREFTRLG 495
            VL++AGQVIIRI +GKVH RNTLQQLERVGPKSVGVCLLT+ FVGMAFTIQFVREFT+LG
Sbjct: 105  VLVVAGQVIIRILKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVREFTKLG 164

Query: 496  LNRSVGGVLALAFIRELSPVITSIVVAGRIGSAFAAELGTMQVSEQTDTLRVLGTDPVDY 675
            L RSVGGVLALAF RELSPV+TSIVVAGRIGSA+AAELGTMQVSEQTDTLRVLGT+PVDY
Sbjct: 165  LQRSVGGVLALAFSRELSPVVTSIVVAGRIGSAYAAELGTMQVSEQTDTLRVLGTNPVDY 224

Query: 676  LVTPRVIACCVALPILTLICFTVGLASSAILADGVYGVSINIILESARRALNPWDIISAM 855
            LVTPRVIA CVALP+LTL+CFTVGLASSAILADGV+GVSINIIL+SA+R L  WDIISAM
Sbjct: 225  LVTPRVIASCVALPLLTLMCFTVGLASSAILADGVFGVSINIILDSAQRVLKSWDIISAM 284

Query: 856  IKSQVFGGIISIVSCAWGVTTLGGAKGVGEXXXXXXXXXXXXIFIADFFLSCCFFQGAGD 1035
            IKSQVFG IISIVSCAWGVTT GGAKGVGE            IFIADF LS CFFQG GD
Sbjct: 285  IKSQVFGAIISIVSCAWGVTTSGGAKGVGESTTSAVVISLVGIFIADFALSYCFFQGVGD 344

Query: 1036 SLKNCM 1053
            SLKN M
Sbjct: 345  SLKNAM 350


>ref|XP_003536225.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like
            [Glycine max]
          Length = 356

 Score =  424 bits (1090), Expect = e-116
 Identities = 214/260 (82%), Positives = 233/260 (89%)
 Frame = +1

Query: 274  SKWSPPRSLWRGLSVLILAGQVIIRIFQGKVHRRNTLQQLERVGPKSVGVCLLTATFVGM 453
            S WSPPR LWRGLSVLILAGQVI++  +GK+H RNTLQQLERVGPKSVGVCLLT+ FVGM
Sbjct: 97   SNWSPPRYLWRGLSVLILAGQVIVKTLKGKIHWRNTLQQLERVGPKSVGVCLLTSAFVGM 156

Query: 454  AFTIQFVREFTRLGLNRSVGGVLALAFIRELSPVITSIVVAGRIGSAFAAELGTMQVSEQ 633
            AFTIQFVREFTRLGLNRSVGGVLALAF RELSPV+T+IVVAGRIGSAFAAELGTMQVSEQ
Sbjct: 157  AFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQ 216

Query: 634  TDTLRVLGTDPVDYLVTPRVIACCVALPILTLICFTVGLASSAILADGVYGVSINIILES 813
            TDTLRVLG+DPVDYLVTPRV+A C+ALP+LTL+CFT+G+ASSA+LADGVYGVSINIIL+S
Sbjct: 217  TDTLRVLGSDPVDYLVTPRVLATCIALPLLTLLCFTLGMASSALLADGVYGVSINIILDS 276

Query: 814  ARRALNPWDIISAMIKSQVFGGIISIVSCAWGVTTLGGAKGVGEXXXXXXXXXXXXIFIA 993
            A+RAL  WDIISAMIKSQVFG IISIVSCAWGVTTLGGAKGVGE            +FIA
Sbjct: 277  AQRALRSWDIISAMIKSQVFGAIISIVSCAWGVTTLGGAKGVGESTTSAVVISLVGVFIA 336

Query: 994  DFFLSCCFFQGAGDSLKNCM 1053
            DF LS  FFQGAGD LKNC+
Sbjct: 337  DFALSYVFFQGAGDQLKNCI 356


>ref|XP_003555520.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic-like
            [Glycine max]
          Length = 356

 Score =  422 bits (1085), Expect = e-116
 Identities = 212/260 (81%), Positives = 233/260 (89%)
 Frame = +1

Query: 274  SKWSPPRSLWRGLSVLILAGQVIIRIFQGKVHRRNTLQQLERVGPKSVGVCLLTATFVGM 453
            S WSPPR LWRGLSVLILAGQV+++  +GK+H RNTLQQLERVGPKSVGVCLLT+ FVGM
Sbjct: 97   SNWSPPRYLWRGLSVLILAGQVVVKTLKGKIHWRNTLQQLERVGPKSVGVCLLTSAFVGM 156

Query: 454  AFTIQFVREFTRLGLNRSVGGVLALAFIRELSPVITSIVVAGRIGSAFAAELGTMQVSEQ 633
            AFTIQFVREFTRLGLNRSVGGVLALAF RELSPV+T+IVVAGRIGSAFAAELGTMQVSEQ
Sbjct: 157  AFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQ 216

Query: 634  TDTLRVLGTDPVDYLVTPRVIACCVALPILTLICFTVGLASSAILADGVYGVSINIILES 813
            TDTLRVLG+DPVDYLVTPRV+A C+ALP+LTL+CFT+G+ASSA+LADGVYG+SINII++S
Sbjct: 217  TDTLRVLGSDPVDYLVTPRVLATCIALPLLTLLCFTLGMASSALLADGVYGLSINIIMDS 276

Query: 814  ARRALNPWDIISAMIKSQVFGGIISIVSCAWGVTTLGGAKGVGEXXXXXXXXXXXXIFIA 993
            A+RAL  WDIISAMIKSQVFG IISIVSCAWGVTTLGGAKGVGE            IFIA
Sbjct: 277  AQRALRSWDIISAMIKSQVFGAIISIVSCAWGVTTLGGAKGVGESTTSAVVISLVGIFIA 336

Query: 994  DFFLSCCFFQGAGDSLKNCM 1053
            DF LS  FFQGAGD LKNC+
Sbjct: 337  DFALSYVFFQGAGDQLKNCV 356


Top