BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011613
         (1336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containi...   568   e-159
ref|XP_002532598.1| pentatricopeptide repeat-containing protein,...   566   e-159
ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|2...   553   e-155
ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containi...   550   e-154
ref|XP_002878256.1| pentatricopeptide repeat-containing protein ...   547   e-153

>ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
            [Vitis vinifera] gi|302143502|emb|CBI22063.3| unnamed
            protein product [Vitis vinifera]
          Length = 548

 Score =  568 bits (1464), Expect = e-159
 Identities = 280/356 (78%), Positives = 317/356 (89%)
 Frame = +2

Query: 2    VISHTALMEAYGKGGQYNKAEAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFE 181
            VISHTALMEAYGKG QYNKAE++FRRM SSGPEPSA TYQ+ILK FVE +KF+EAE  FE
Sbjct: 175  VISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFE 234

Query: 182  TLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFET 361
            TLLDD+ SPLKPDQKMFHMMIYMY+K+GNY+KARK F  M +RGVPQST+T+NSLMSFET
Sbjct: 235  TLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSLMSFET 294

Query: 362  DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
            +YKEVS+ YDQMQRAGL+PDV+SYALLI AYGKARRE+EALAVFEEMLDAGVRPT K+YN
Sbjct: 295  NYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYN 354

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            ILLDAFA+SGMVD+ARTVFKSMRRD+C PDI SYTTMLSAYVNASDM+GAE FFRRL+QD
Sbjct: 355  ILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 414

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNA 901
            GFEPNVVTYGTLIKGYAK++NLEKMMEKYEEM++ GIKANQ I+T +MDA+GKN DFG+A
Sbjct: 415  GFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSA 474

Query: 902  VIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVGLAGNTIDGGMGIGFSK 1069
            V WFKEMG CG PPD+KA NILLSLAK+  E++EAN LVG +    +G M  G  K
Sbjct: 475  VFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANLLVGYSSKYSNGQMDNGSFK 530



 Score =  103 bits (256), Expect = 1e-19
 Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 3/206 (1%)
 Frame = +2

Query: 362 DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
           D+ +  R++  M + G  P VIS+  L++AYGK ++ ++A +VF  ML +G  P+  +Y 
Sbjct: 155 DFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQ 214

Query: 542 ILLDAFAVSGMVDEARTVFKSMRRDK---CAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 712
           ++L  F       EA   F+++  D+     PD   +  M+  Y  A + + A   F  +
Sbjct: 215 LILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLM 274

Query: 713 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 892
           ++ G   + VTY +L+   +   N +++ + Y++M+  G++ +   +  +++A+GK    
Sbjct: 275 RERGVPQSTVTYNSLM---SFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARRE 331

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILL 970
             A+  F+EM   G  P  KA NILL
Sbjct: 332 EEALAVFEEMLDAGVRPTHKAYNILL 357



 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
 Frame = +2

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            +L+ A+   G  ++A  VF  M +   +P + S+T ++ AY      + AE  FRR+   
Sbjct: 145  MLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSS 204

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEM---RLKGIKANQTIFTTIMDAHGKNTDF 892
            G EP+ +TY  ++K + + N  ++  E +E +       +K +Q +F  ++  + K  ++
Sbjct: 205  GPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNY 264

Query: 893  GNAVIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVGLAG 1030
              A   F  M   G P      N L+S   + +E  +  + +  AG
Sbjct: 265  EKARKIFGLMRERGVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAG 310


>ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527686|gb|EEF29795.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 553

 Score =  566 bits (1459), Expect = e-159
 Identities = 279/356 (78%), Positives = 320/356 (89%)
 Frame = +2

Query: 2    VISHTALMEAYGKGGQYNKAEAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFE 181
            V+SHTALMEAYG+G +YN AEAIFRRMQSSGP+PSA TYQIILK FVE +KF+EAE +FE
Sbjct: 175  VVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFE 234

Query: 182  TLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFET 361
            TLLD++ SPLKPDQKMFHMMIYM++K+GNY+KAR+ FA M  RGVP+ST+T+NSLMSFET
Sbjct: 235  TLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFET 294

Query: 362  DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
            +YKEVS+IYDQMQR+GLQPDVISYALLI AYGKARREDEALAVFEEMLDAGVRPT K+YN
Sbjct: 295  NYKEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYN 354

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            ILLDAFA+SGMV++ARTVFKSMRRD+  PD+ SYTTMLSAYVNASDM GAE FF RL+QD
Sbjct: 355  ILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQD 414

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNA 901
            G EPNVVTYG LIKGYAK NNL+KMMEKYEEM+L+G+KANQTIFTTIMDA+GKN DFG+A
Sbjct: 415  GLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSA 474

Query: 902  VIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVGLAGNTIDGGMGIGFSK 1069
            VIW+KEM   G PPDQKAKNILLSLAK+A+EQKEAN++VG +G+  D     G S+
Sbjct: 475  VIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQMVGHSGDCGDAHSIFGSSR 530



 Score = 94.7 bits (234), Expect = 5e-17
 Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 3/206 (1%)
 Frame = +2

Query: 362 DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
           ++    ++   M + G  P+V+S+  L++AYG+  R + A A+F  M  +G +P+  +Y 
Sbjct: 155 NFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQ 214

Query: 542 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 712
           I+L  F       EA  VF+++    +    PD   +  M+  +  A + + A   F  +
Sbjct: 215 IILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALM 274

Query: 713 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 892
            Q G   + VTY +L+   +   N +++ + Y++M+  G++ +   +  +++A+GK    
Sbjct: 275 TQRGVPKSTVTYNSLM---SFETNYKEVSKIYDQMQRSGLQPDVISYALLINAYGKARRE 331

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILL 970
             A+  F+EM   G  P  KA NILL
Sbjct: 332 DEALAVFEEMLDAGVRPTHKAYNILL 357



 Score = 64.7 bits (156), Expect = 5e-08
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
 Frame = +2

Query: 542 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
           +L+ A+   G    A  V   M +    P++ S+T ++ AY   +  + AE  FRR+Q  
Sbjct: 145 MLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSS 204

Query: 722 GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEM---RLKGIKANQTIFTTIMDAHGKNTDF 892
           G +P+ VTY  ++K + + N  ++  E +E +       +K +Q +F  ++  H K  ++
Sbjct: 205 GPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNY 264

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILLSLAKSAEE 994
             A   F  M   G P      N L+S   + +E
Sbjct: 265 EKARQIFALMTQRGVPKSTVTYNSLMSFETNYKE 298


>ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|222845543|gb|EEE83090.1|
            predicted protein [Populus trichocarpa]
          Length = 575

 Score =  553 bits (1424), Expect = e-155
 Identities = 269/340 (79%), Positives = 313/340 (92%)
 Frame = +2

Query: 2    VISHTALMEAYGKGGQYNKAEAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFE 181
            V+SHTALMEAYG+GG+YN AEAIFRRMQ+SGPEPSA TYQIILKTFVE +KF+EAE +FE
Sbjct: 151  VVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEEVFE 210

Query: 182  TLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFET 361
            TLL+ + SPL+PDQKMFHMMIYM KK+GNY+KARK FA M +RGVPQST+T+NSLMSFET
Sbjct: 211  TLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSFET 270

Query: 362  DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
            +YKEVS+IYDQMQR+GL+PDV+SYALLIKAYG+ARRE+EALAVFEEMLDAGVRP+ K+YN
Sbjct: 271  NYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYN 330

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            ILLDAFA+SGMV++AR VFKSMRRD+C PD+ SYTTMLSAYVNASDM+GAE FF+RL+QD
Sbjct: 331  ILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQD 390

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNA 901
            G +PNVVTYG LIKG+AK+NNLEKMME YEEM+L  IKANQTI TTIMDA+GKN DFG+A
Sbjct: 391  GLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSA 450

Query: 902  VIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVG 1021
            VIW+KEM   G PPDQKA+NILLSLAK+ +EQKEA++LVG
Sbjct: 451  VIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQKEASQLVG 490



 Score = 87.4 bits (215), Expect = 7e-15
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
 Frame = +2

Query: 362 DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
           D+     +   M   G  P+V+S+  L++AYG+  R + A A+F  M  +G  P+  +Y 
Sbjct: 131 DFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALTYQ 190

Query: 542 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 712
           I+L  F       EA  VF+++         PD   +  M+     A + + A   F  +
Sbjct: 191 IILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFALM 250

Query: 713 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 892
            + G   + VTY +L+   +   N +++ + Y++M+  G++ +   +  ++ A+G+    
Sbjct: 251 AERGVPQSTVTYNSLM---SFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARRE 307

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILL 970
             A+  F+EM   G  P  KA NILL
Sbjct: 308 EEALAVFEEMLDAGVRPSHKAYNILL 333



 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
 Frame = +2

Query: 542 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
           +L+ A+   G  + A  V +SM  +   P++ S+T ++ AY      + AE  FRR+Q  
Sbjct: 121 MLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTS 180

Query: 722 GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLK---GIKANQTIFTTIMDAHGKNTDF 892
           G EP+ +TY  ++K + + N  ++  E +E +  K    ++ +Q +F  ++    K  ++
Sbjct: 181 GPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNY 240

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILLSLAKSAEE 994
             A   F  M   G P      N L+S   + +E
Sbjct: 241 EKARKVFALMAERGVPQSTVTYNSLMSFETNYKE 274


>ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like
            [Cucumis sativus]
          Length = 580

 Score =  550 bits (1417), Expect = e-154
 Identities = 268/356 (75%), Positives = 316/356 (88%)
 Frame = +2

Query: 2    VISHTALMEAYGKGGQYNKAEAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFE 181
            V+SHTALMEAYG+G +YN AEAIFRRMQS GPEPSA TYQI+LKTFVE  KF+EAE +F+
Sbjct: 173  VVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFD 232

Query: 182  TLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFET 361
            +LL+ +   LKPDQKMFHM+IYM+KK+GNY+KARK FA+M  RGVPQ+T+T+NSLMSFET
Sbjct: 233  SLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFET 292

Query: 362  DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
            +YKEVS+IYDQMQRAGLQPDV+SYALLI AYGKARRE+EALAVFEEMLDAG+RPT K+YN
Sbjct: 293  NYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYN 352

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            ILLDAFA+SGMV++A+ VFKSM+RD+C+PDI SYTTMLSAYVNASDM+GAE FFRRL+QD
Sbjct: 353  ILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQD 412

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNA 901
            GF PNVVTYGTLIKGYAK+NNLEKM+++YEEM++ GI+ NQTI TTIMDA+GKN DFG+A
Sbjct: 413  GFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSA 472

Query: 902  VIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVGLAGNTIDGGMGIGFSK 1069
            VIWF E+ SCG  PDQKAKNILLSLAK+AEE  EAN+LVG +  +     G  FS+
Sbjct: 473  VIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLVGYSSQSSSPQRGGKFSR 528



 Score = 93.6 bits (231), Expect = 1e-16
 Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 3/206 (1%)
 Frame = +2

Query: 362 DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
           D+    ++ + M + G  P+V+S+  L++AYG+ RR + A A+F  M   G  P+  +Y 
Sbjct: 153 DFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQ 212

Query: 542 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 712
           I+L  F       EA  +F S+    +    PD   +  ++  +  A + + A   F  +
Sbjct: 213 IMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEM 272

Query: 713 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 892
              G     VTY +L+   +   N +++ + Y++M+  G++ +   +  ++ A+GK    
Sbjct: 273 AARGVPQTTVTYNSLM---SFETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARRE 329

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILL 970
             A+  F+EM   G  P  KA NILL
Sbjct: 330 EEALAVFEEMLDAGIRPTHKAYNILL 355



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 3/166 (1%)
 Frame = +2

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            +L+ A+   G  + A  V   M +   AP++ S+T ++ AY      + AE  FRR+Q  
Sbjct: 143  MLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSG 202

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKG---IKANQTIFTTIMDAHGKNTDF 892
            G EP+ +TY  ++K + + +  ++  E ++ +  K    +K +Q +F  I+    K  ++
Sbjct: 203  GPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNY 262

Query: 893  GNAVIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVGLAG 1030
              A   F EM + G P      N L+S   + +E  +  + +  AG
Sbjct: 263  EKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQRAG 308


>ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297324094|gb|EFH54515.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 582

 Score =  547 bits (1410), Expect = e-153
 Identities = 265/345 (76%), Positives = 310/345 (89%)
 Frame = +2

Query: 2    VISHTALMEAYGKGGQYNKAEAIFRRMQSSGPEPSAFTYQIILKTFVEADKFEEAESIFE 181
            VIS+TALME+YG+GG+ N AEAIFRRMQSSGPEPSA TYQIILKTFVE DKF+EAE +FE
Sbjct: 174  VISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFE 233

Query: 182  TLLDDKISPLKPDQKMFHMMIYMYKKSGNYDKARKTFAKMPDRGVPQSTITFNSLMSFET 361
            TLLD+K SPLKPDQKM+HMMIYMYKK+GNYDKARK F+ M  +GVPQST+T+NSLMSFET
Sbjct: 234  TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFET 293

Query: 362  DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
            +YKEVS+IYDQMQR+G+QPDV+SYALLIKAYG+ARRE+EAL+VFEEMLDAGVRPT K+YN
Sbjct: 294  NYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 353

Query: 542  ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
            ILLDAFA+SGMV++A+TVFKSMRRD+  PD++SYTTMLSAYVNASDM+GAE FF+R++ D
Sbjct: 354  ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 413

Query: 722  GFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDFGNA 901
            GFEPN+VTYGT+IKGYAK N++EKMME YE+MRL GIKANQTI TTIMDA G+  DFG+A
Sbjct: 414  GFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSA 473

Query: 902  VIWFKEMGSCGYPPDQKAKNILLSLAKSAEEQKEANELVGLAGNT 1036
            + W+KEM SCG PPDQKAKN+LLSL  + +E  EA EL GL   T
Sbjct: 474  LGWYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAKELTGLRNET 518



 Score = 94.4 bits (233), Expect = 6e-17
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 3/206 (1%)
 Frame = +2

Query: 362 DYKEVSRIYDQMQRAGLQPDVISYALLIKAYGKARREDEALAVFEEMLDAGVRPTRKSYN 541
           ++    R+   + + G  P+VISY  L+++YG+  + + A A+F  M  +G  P+  +Y 
Sbjct: 154 NFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVTYQ 213

Query: 542 ILLDAFAVSGMVDEARTVFKSM---RRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRL 712
           I+L  F       EA  VF+++   ++    PD   Y  M+  Y  A + D A   F  +
Sbjct: 214 IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSM 273

Query: 713 QQDGFEPNVVTYGTLIKGYAKMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 892
              G   + VTY +L+   +   N +++ + Y++M+  GI+ +   +  ++ A+G+    
Sbjct: 274 VGKGVPQSTVTYNSLM---SFETNYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARRE 330

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILL 970
             A+  F+EM   G  P  KA NILL
Sbjct: 331 EEALSVFEEMLDAGVRPTHKAYNILL 356



 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
 Frame = +2

Query: 542 ILLDAFAVSGMVDEARTVFKSMRRDKCAPDIYSYTTMLSAYVNASDMDGAEMFFRRLQQD 721
           +L+ A+   G  + A  V   + +   +P++ SYT ++ +Y      + AE  FRR+Q  
Sbjct: 144 MLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 203

Query: 722 GFEPNVVTYGTLIKGYA---KMNNLEKMMEKYEEMRLKGIKANQTIFTTIMDAHGKNTDF 892
           G EP+ VTY  ++K +    K    E++ E   + +   +K +Q ++  ++  + K  ++
Sbjct: 204 GPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263

Query: 893 GNAVIWFKEMGSCGYPPDQKAKNILLSLAKSAEE 994
             A   F  M   G P      N L+S   + +E
Sbjct: 264 DKARKVFSSMVGKGVPQSTVTYNSLMSFETNYKE 297