BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00011536
         (1485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containi...   504   e-140
ref|XP_002512090.1| pentatricopeptide repeat-containing protein,...   499   e-139
ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containi...   469   e-130
ref|XP_003516357.1| PREDICTED: pentatricopeptide repeat-containi...   456   e-126
ref|XP_003614060.1| Pentatricopeptide repeat-containing protein ...   452   e-124

>ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
            mitochondrial-like [Vitis vinifera]
            gi|297738080|emb|CBI27281.3| unnamed protein product
            [Vitis vinifera]
          Length = 616

 Score =  504 bits (1297), Expect = e-140
 Identities = 259/462 (56%), Positives = 329/462 (71%), Gaps = 6/462 (1%)
 Frame = +3

Query: 117  MAVFLKSRH-LLKTLNPSSG---RSISTFTYLSQEPELAEPPNQTSASSAVPLPPNPSFG 284
            MA+  ++R  LLKTLN  +     SISTFT+LSQEP+LAEP       S  PLPPNP+ G
Sbjct: 5    MAILSRARKTLLKTLNHHNNPFKASISTFTFLSQEPQLAEP--SLPPPSPTPLPPNPASG 62

Query: 285  TPIFQENWRNPNAYPSPPSESAHSLVPLGFIHQTSFSRLQTLAQTLDTNSLMNVFADWAT 464
            +P++ ENWR+P          A S++PLGF+HQ+S SRLQ L+QTLD  SLMNVFADW T
Sbjct: 63   SPLYNENWRSP-------IPQAQSIIPLGFLHQSSSSRLQALSQTLDVPSLMNVFADWMT 115

Query: 465  SQRWVDIKQLFEFWIRTLDTNGLPKMPHVDSYNFYIRANLQCGVLPADLVLLIEDMKNYQ 644
            SQRW D+ QLFEFWIR+LD NG P  P V+ YN Y+RA L  G    +L+ L+  M++Y 
Sbjct: 116  SQRWADMNQLFEFWIRSLDKNGKPNKPDVNLYNHYLRAKLMIGASAGELLDLVAQMEDYA 175

Query: 645  LTPNTASYNLLLKCILSCREVESAEMAVIKSAEMVINRMLETGKEALPDDDSYDLIMGIM 824
            + PNTAS+NL+LK +   RE E+AE         +  RML+TGKE++PDD+SY+L++G++
Sbjct: 176  IIPNTASFNLVLKAMYQARETEAAEK--------LFQRMLQTGKESMPDDESYELVVGML 227

Query: 825  FKANLLDDALKYLDMTLKSGCTLQMNTFNDCAWRCLQAGRLDTLAQIIQRCKTMEHNKAL 1004
            F  + +D AL+Y+D+TLKSG  L M  F +C   C+  GRLD L  II+RCKTM+ NKAL
Sbjct: 228  FLTDQIDAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVSIIERCKTMDQNKAL 287

Query: 1005 CPNWKLCVDIAHRALQEDNGKLAFFALEFFARWMARGVKTRPPVQLSVDEGLVISALGTA 1184
             P+W +C+ IA  A+QEDN KLAF+ALEF ARW+ARG   R PV LSVDEGLV+SALGTA
Sbjct: 288  SPSWNMCIFIADIAMQEDNSKLAFYALEFMARWIARGENARGPVLLSVDEGLVVSALGTA 347

Query: 1185 GRTYNPTLIEGSWSILHRSLRQISPPSSESYLSKIYALASLDNLPKAFGALIEFESVYGS 1364
            GRTY+ TL++ SW+IL RSLRQ   P  ESYL+KIYA A+L NL +AF  L EFE+ Y +
Sbjct: 348  GRTYSSTLLDASWAILRRSLRQKKAPQPESYLAKIYADAALGNLQRAFSTLHEFETAYRN 407

Query: 1365 STE--AETLFSPFTSLHPLVVACCKKGYDNLDKVYVQLETLS 1484
            S +   E +FSPFTSLHPLV+A  KKG++ LD VY QLE LS
Sbjct: 408  SPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLENLS 449


>ref|XP_002512090.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223549270|gb|EEF50759.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  499 bits (1286), Expect = e-139
 Identities = 249/460 (54%), Positives = 325/460 (70%), Gaps = 4/460 (0%)
 Frame = +3

Query: 117  MAVFLKSRHLLKTLNPSSGRSISTFTYLSQEPELAEPPNQT--SASSAVPLPPNPSFGTP 290
            +A+  +++ L+KTLN +  +SISTFT+LSQEPELA  P  +  + ++  PLPPNP+ G+P
Sbjct: 5    IAILTRTKALIKTLNHNPIKSISTFTFLSQEPELATYPTHSDPNPTTVTPLPPNPASGSP 64

Query: 291  IFQENWRNPNAYPSPPSESAHSLVPLGFIHQTSFSRLQTLAQTLDTNSLMNVFADWATSQ 470
            ++ ENWRNP    +P +     L+P G +HQ   +R Q+++QTLD NSL+N+FADW TSQ
Sbjct: 65   LYHENWRNPTLIQNPDA-----LIPFGILHQPPTARFQSMSQTLDLNSLLNLFADWMTSQ 119

Query: 471  RWVDIKQLFEFWIRTLDTNGLPKMPHVDSYNFYIRANLQCGVLPADLVLLIEDMKNYQLT 650
            RW D+KQLFEFWIR+LD NG P  P V+ +N Y+RANL       DL+ L+  M++Y + 
Sbjct: 120  RWSDMKQLFEFWIRSLDQNGKPNKPDVNLFNHYLRANLMTNATAVDLLDLLAQMEDYAVL 179

Query: 651  PNTASYNLLLKCILSCREVESAEMAVIKSAEMVINRMLETGKEALPDDDSYDLIMGIMFK 830
            PNTAS+NL+LK +   RE  +AE         ++ RM  TG E+ PDD+SYDL++G++F 
Sbjct: 180  PNTASFNLVLKAMFQARETAAAEK--------LLQRMELTGNESQPDDESYDLVIGMLFS 231

Query: 831  ANLLDDALKYLDMTLKSGCTLQMNTFNDCAWRCLQAGRLDTLAQIIQRCKTMEHNKALCP 1010
             N +D ALKY+D TLK+G TL M  F +C   C+  GRLDTL  II++CK ++ NKAL P
Sbjct: 232  TNQIDAALKYIDKTLKNGHTLSMRVFTECVKSCVNKGRLDTLVSIIEKCKKVDQNKALSP 291

Query: 1011 NWKLCVDIAHRALQEDNGKLAFFALEFFARWMARGVKTRPPVQLSVDEGLVISALGTAGR 1190
             W +C  IA  A+QEDN KLA++ALEF A+W+ARG   RP + LSVDEGLV+SALGTAGR
Sbjct: 292  TWNMCYYIAEVAMQEDNSKLAYYALEFMAKWIARGENARPAILLSVDEGLVVSALGTAGR 351

Query: 1191 TYNPTLIEGSWSILHRSLRQISPPSSESYLSKIYALASLDNLPKAFGALIEFESVYGSST 1370
            TY+ TL++ SW+IL RSLR    PS ESYL +IYA ASL NL KAF  L E+ES Y SS 
Sbjct: 352  TYSSTLLDASWAILRRSLRDKKAPSPESYLGRIYAYASLGNLQKAFTTLREYESAYDSSE 411

Query: 1371 E--AETLFSPFTSLHPLVVACCKKGYDNLDKVYVQLETLS 1484
            +   E LFSPFTSL+PLVVAC KKG++ LD VY QLE LS
Sbjct: 412  KEAEEELFSPFTSLNPLVVACSKKGFETLDTVYFQLENLS 451


>ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
            mitochondrial-like [Cucumis sativus]
            gi|449489211|ref|XP_004158247.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g26460,
            mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  469 bits (1207), Expect = e-130
 Identities = 239/462 (51%), Positives = 315/462 (68%), Gaps = 6/462 (1%)
 Frame = +3

Query: 117  MAVFLKSRHLLKTL---NPSSGRSISTFTYLSQEPELAEPPNQTSASSAVPLPPNPSFGT 287
            MA+  ++  L++T    N    + ISTFTYLSQEP+L   P   S +   PLPPNP+ G+
Sbjct: 5    MAILSRTHSLIRTTSLNNVCFFKPISTFTYLSQEPQLVNEPVDISLT---PLPPNPASGS 61

Query: 288  PIFQENWRNP-NAYPSPPSESAHSLVPLGFIHQTSFSRLQTLAQTLDTNSLMNVFADWAT 464
            P++ ENWRNP N Y       A S++P GF+ Q+   R+Q L+QTLD   L++VFADW  
Sbjct: 62   PLYNENWRNPLNNY-----SMAQSMIPDGFLSQSPNYRIQALSQTLDVQGLLSVFADWMA 116

Query: 465  SQRWVDIKQLFEFWIRTLDTNGLPKMPHVDSYNFYIRANLQCGVLPADLVLLIEDMKNYQ 644
            SQRW D+KQLFEFWIR+LD +G P  P V+ YN Y+RANL     P  L+ L+  M++Y 
Sbjct: 117  SQRWEDMKQLFEFWIRSLDKDGKPNKPDVNLYNNYLRANLMSDATPGVLLDLLTRMEDYA 176

Query: 645  LTPNTASYNLLLKCILSCREVESAEMAVIKSAEMVINRMLETGKEALPDDDSYDLIMGIM 824
            ++PNTAS+NL+LK +   RE E+AE         ++ RML+TG+E++PDD+SYDL++ ++
Sbjct: 177  ISPNTASFNLVLKAMYQARETEAAEK--------LLERMLQTGEESMPDDESYDLVIRML 228

Query: 825  FKANLLDDALKYLDMTLKSGCTLQMNTFNDCAWRCLQAGRLDTLAQIIQRCKTMEHNKAL 1004
                 +D ALKY+D+T K G  L +  F++C   C++ GRLDTL  +I +CK    NKAL
Sbjct: 229  LSTYQIDAALKYIDLTSKPGHMLSLKAFSECVRSCVRKGRLDTLVSVIDKCKATVENKAL 288

Query: 1005 CPNWKLCVDIAHRALQEDNGKLAFFALEFFARWMARGVKTRPPVQLSVDEGLVISALGTA 1184
             P W  C DIA  A Q+DN KLA++ALEF A+W+ARG   RPPV LSVDEGLV+S LGTA
Sbjct: 289  SPTWNSCYDIAIAATQQDNSKLAYYALEFMAQWIARGENARPPVHLSVDEGLVVSTLGTA 348

Query: 1185 GRTYNPTLIEGSWSILHRSLRQISPPSSESYLSKIYALASLDNLPKAFGALIEFESVYGS 1364
            GRTY+ +L++ +WS+L RSLRQ   P+ ES+L KIY LASL NL +AF  L EFE  Y +
Sbjct: 349  GRTYSSSLLDAAWSVLKRSLRQKKVPNPESFLGKIYTLASLGNLQRAFSTLREFEEAYRN 408

Query: 1365 STE--AETLFSPFTSLHPLVVACCKKGYDNLDKVYVQLETLS 1484
            S +   E +FSPFTSLHPLVVAC KKG++ LD VY QLE LS
Sbjct: 409  SDDGSCEDMFSPFTSLHPLVVACSKKGFETLDLVYFQLENLS 450


>ref|XP_003516357.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
            mitochondrial-like [Glycine max]
          Length = 616

 Score =  456 bits (1172), Expect = e-126
 Identities = 231/463 (49%), Positives = 314/463 (67%), Gaps = 7/463 (1%)
 Frame = +3

Query: 117  MAVFLKSRHLL--KTLNPSSGRSISTFTYLSQEPELAE--PPNQTSASSAVPLPPNPSFG 284
            MA+  ++R LL  K    +  ++I+TF +LSQEP+L +  PP    +SS  PLPPNP+ G
Sbjct: 5    MAILFRTRTLLSSKPTTTTLIKTITTFPFLSQEPQLVDSTPP---PSSSTTPLPPNPASG 61

Query: 285  TPIFQENWRNPNAYPSPPSESA--HSLVPLGFIHQTSFSRLQTLAQTLDTNSLMNVFADW 458
            +P++ ENWR+P   P P S +A  H+L P+GF ++ +       ++T D  +L+++F DW
Sbjct: 62   SPLYNENWRSPIPPPPPASSAATSHALAPVGFYNRAT-------SETYDPRALLDLFGDW 114

Query: 459  ATSQRWVDIKQLFEFWIRTLDTNGLPKMPHVDSYNFYIRANLQCGVLPADLVLLIEDMKN 638
              SQ+W D+K LFE W+R+LD  G P  P V+ +N Y+RANL  G   A+L+ L+  M  
Sbjct: 115  MASQQWHDVKFLFEAWVRSLDKTGKPNKPDVNLFNHYLRANLMLGASAAELLDLVAQMAE 174

Query: 639  YQLTPNTASYNLLLKCILSCREVESAEMAVIKSAEMVINRMLETGKEALPDDDSYDLIMG 818
            + + PNTAS+NL+LK +   +E          +A+ ++ RML++G +ALPDD+SYDL++G
Sbjct: 175  FDVAPNTASFNLVLKAMCQAKET--------LAADKLLQRMLQSGNDALPDDESYDLVIG 226

Query: 819  IMFKANLLDDALKYLDMTLKSGCTLQMNTFNDCAWRCLQAGRLDTLAQIIQRCKTMEHNK 998
            ++F  + +D A KY+D+ LKSG  L M  F +CA  C+  GRLDTL  II+RC+  + NK
Sbjct: 227  MLFSMDQIDTAFKYIDLILKSGNVLSMKVFMNCAGSCVNKGRLDTLVTIIERCRASDQNK 286

Query: 999  ALCPNWKLCVDIAHRALQEDNGKLAFFALEFFARWMARGVKTRPPVQLSVDEGLVISALG 1178
            ALCPNW LC  I   A +EDN KLAF+ LEF A+W+ +G + RPP+ +SVDEGLV+SAL 
Sbjct: 287  ALCPNWDLCNFIVEIATREDNSKLAFYGLEFMAKWIVKGERQRPPIYISVDEGLVLSALL 346

Query: 1179 TAGRTYNPTLIEGSWSILHRSLRQISPPSSESYLSKIYALASLDNLPKAFGALIEFESVY 1358
            TAGRTYN  L+  SW++L RSLR+   P+ ESYL KIYA ASL NL KAFG L E+ES Y
Sbjct: 347  TAGRTYNTDLLVASWAVLDRSLRKKKAPNPESYLGKIYAHASLGNLQKAFGTLNEYESAY 406

Query: 1359 G-SSTEAETLFSPFTSLHPLVVACCKKGYDNLDKVYVQLETLS 1484
            G S  EAE LF PFTSLHPLVVAC KKG++ LD VY QLE L+
Sbjct: 407  GDSGQEAEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENLN 449


>ref|XP_003614060.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355515395|gb|AES97018.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 611

 Score =  452 bits (1163), Expect = e-124
 Identities = 230/457 (50%), Positives = 312/457 (68%), Gaps = 1/457 (0%)
 Frame = +3

Query: 117  MAVFLKSRHLLKTLNPSSGRSISTFTYLSQEPELAEPPNQTSASSAVPLPPNPSFGTPIF 296
            M++  ++R LL   N +  +SISTF YL+QEPEL +P       S+  LPPNP+ G+P++
Sbjct: 5    MSILYRTRSLLTKPNFTI-KSISTFPYLNQEPELVDPTPPPPTESS--LPPNPASGSPLY 61

Query: 297  QENWRNPNAYPSPPSESAHSLVPLGFIHQTSFSRLQTLAQTLDTNSLMNVFADWATSQRW 476
             ENWRNP    S  ++  H            F+R  ++++T D+N+L+NVF DW  SQRW
Sbjct: 62   NENWRNPVPKTSSLTQFGH------------FTRA-SVSETYDSNALLNVFGDWVASQRW 108

Query: 477  VDIKQLFEFWIRTLDTNGLPKMPHVDSYNFYIRANLQCGVLPADLVLLIEDMKNYQLTPN 656
             D+K++FE W+R+LD NG P  P V+ +N YIRANL  G   ADL+ L+  M+ + + PN
Sbjct: 109  GDVKEMFEGWVRSLDKNGKPNKPDVNLFNHYIRANLMIGASAADLLDLLAQMEQFDILPN 168

Query: 657  TASYNLLLKCILSCREVESAEMAVIKSAEMVINRMLETGKEALPDDDSYDLIMGIMFKAN 836
            TAS+NL+LK +   RE          +AE ++ RML++G EA PDD+S+DL++G++F  +
Sbjct: 169  TASFNLVLKAMHQARET--------LAAEKLLERMLQSGNEAFPDDESFDLVIGMLFATD 220

Query: 837  LLDDALKYLDMTLKSGCTLQMNTFNDCAWRCLQAGRLDTLAQIIQRCKTMEHNKALCPNW 1016
             +D A KY+D TLK G  L M+ F  C   C++ GRLDTL  II++C+  + NKALCP+W
Sbjct: 221  QIDTAFKYIDSTLKHGNKLSMDLFMKCVRSCVKQGRLDTLVAIIEKCRATDQNKALCPSW 280

Query: 1017 KLCVDIAHRALQEDNGKLAFFALEFFARWMARGVKTRPPVQLSVDEGLVISALGTAGRTY 1196
            KLC+ IA  A++ DN KLA++ LEF ARW+ +G + RPPV LSVDEGL +SAL TAGRTY
Sbjct: 281  KLCIFIAEVAIRADNSKLAYYGLEFMARWIVKGERARPPVLLSVDEGLAVSALMTAGRTY 340

Query: 1197 NPTLIEGSWSILHRSLRQISPPSSESYLSKIYALASLDNLPKAFGALIEFESVYGSS-TE 1373
            N  L+  +W++L RSLR+   P+ ESYL+KIYALASL NL KAFG L ++ES YG+S  E
Sbjct: 341  NSELLGAAWAVLDRSLRKKKLPNPESYLAKIYALASLGNLQKAFGTLHDYESAYGNSDQE 400

Query: 1374 AETLFSPFTSLHPLVVACCKKGYDNLDKVYVQLETLS 1484
            A+ LF PFTSLHPL VAC KKG++ LD VY QLE LS
Sbjct: 401  ADDLFCPFTSLHPLSVACSKKGFETLDTVYFQLENLS 437