BLASTX nr result
ID: Coptis23_contig00010977
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010977
(409 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001148942.1| ribosome biogenesis protein NEP1 [Zea mays] ... 100 9e-31
ref|XP_002451973.1| hypothetical protein SORBIDRAFT_04g011280 [S... 100 9e-31
ref|XP_002454545.1| hypothetical protein SORBIDRAFT_04g033060 [S... 100 9e-31
ref|NP_001046590.1| Os02g0290400 [Oryza sativa Japonica Group] g... 99 3e-30
ref|XP_002531546.1| Nucleolar essential protein, putative [Ricin... 99 7e-30
>ref|NP_001148942.1| ribosome biogenesis protein NEP1 [Zea mays]
gi|195623488|gb|ACG33574.1| ribosome biogenesis protein
NEP1 [Zea mays] gi|224033677|gb|ACN35914.1| unknown [Zea
mays] gi|413938066|gb|AFW72617.1| Ribosome biogenesis
protein NEP1 [Zea mays]
Length = 286
Score = 100 bits (250), Expect(2) = 9e-31
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +2
Query: 197 DSPLCKAGMVQAIYVKVDNGVLFEIKPHVRIPRTIKRFCGLMLELLQKSRITASDNGEKL 376
DSPL KAG +QA+YV+ + GVLFEIKPHVR+PRT KRFCGLM +LLQK ITA EKL
Sbjct: 135 DSPLTKAGRLQAVYVRTEKGVLFEIKPHVRMPRTFKRFCGLMSQLLQKLSITAVGKREKL 194
Query: 377 LRVIEQPVTRH 409
L V++ PVTR+
Sbjct: 195 LNVVKNPVTRY 205
Score = 57.8 bits (138), Expect(2) = 9e-31
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = +3
Query: 6 GVVGKTAKILNSDEHASFLLKQNKSLDDFRPDILYRALLAI 128
G VGKT +ILNSD+HA++L KQN++ D+RPDI+++ALLAI
Sbjct: 93 GKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAI 133
>ref|XP_002451973.1| hypothetical protein SORBIDRAFT_04g011280 [Sorghum bicolor]
gi|241931804|gb|EES04949.1| hypothetical protein
SORBIDRAFT_04g011280 [Sorghum bicolor]
Length = 285
Score = 100 bits (250), Expect(2) = 9e-31
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +2
Query: 197 DSPLCKAGMVQAIYVKVDNGVLFEIKPHVRIPRTIKRFCGLMLELLQKSRITASDNGEKL 376
DSPL KAG +QA+YV+ + GVLFEIKPHVR+PRT KRFCGLM +LLQK ITA EKL
Sbjct: 134 DSPLTKAGRLQAVYVRTEKGVLFEIKPHVRMPRTFKRFCGLMSQLLQKLSITAVGKREKL 193
Query: 377 LRVIEQPVTRH 409
L V++ PVTR+
Sbjct: 194 LNVVKNPVTRY 204
Score = 57.8 bits (138), Expect(2) = 9e-31
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = +3
Query: 6 GVVGKTAKILNSDEHASFLLKQNKSLDDFRPDILYRALLAI 128
G VGKT +ILNSD+HA++L KQN++ D+RPDI+++ALLAI
Sbjct: 92 GKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAI 132
>ref|XP_002454545.1| hypothetical protein SORBIDRAFT_04g033060 [Sorghum bicolor]
gi|241934376|gb|EES07521.1| hypothetical protein
SORBIDRAFT_04g033060 [Sorghum bicolor]
Length = 280
Score = 100 bits (250), Expect(2) = 9e-31
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +2
Query: 197 DSPLCKAGMVQAIYVKVDNGVLFEIKPHVRIPRTIKRFCGLMLELLQKSRITASDNGEKL 376
DSPL KAG +QA+YV+ + GVLFEIKPHVR+PRT KRFCGLM +LLQK ITA EKL
Sbjct: 129 DSPLTKAGRLQAVYVRTEKGVLFEIKPHVRMPRTFKRFCGLMSQLLQKLSITAVGKREKL 188
Query: 377 LRVIEQPVTRH 409
L V++ PVTR+
Sbjct: 189 LNVVKNPVTRY 199
Score = 57.8 bits (138), Expect(2) = 9e-31
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = +3
Query: 6 GVVGKTAKILNSDEHASFLLKQNKSLDDFRPDILYRALLAI 128
G VGKT +ILNSD+HA++L KQN++ D+RPDI+++ALLAI
Sbjct: 87 GKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAI 127
>ref|NP_001046590.1| Os02g0290400 [Oryza sativa Japonica Group]
gi|47847950|dbj|BAD21740.1| putative nucleolar essential
protein [Oryza sativa Japonica Group]
gi|47847958|dbj|BAD21747.1| putative nucleolar essential
protein [Oryza sativa Japonica Group]
gi|113536121|dbj|BAF08504.1| Os02g0290400 [Oryza sativa
Japonica Group] gi|215678829|dbj|BAG95266.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218190517|gb|EEC72944.1| hypothetical protein
OsI_06808 [Oryza sativa Indica Group]
gi|222622635|gb|EEE56767.1| hypothetical protein
OsJ_06314 [Oryza sativa Japonica Group]
Length = 284
Score = 99.0 bits (245), Expect(2) = 3e-30
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +2
Query: 197 DSPLCKAGMVQAIYVKVDNGVLFEIKPHVRIPRTIKRFCGLMLELLQKSRITASDNGEKL 376
DSPL KAG +QA+YV+ + GVLFEIKP+VR+PRT KRFCGLM +LLQK ITA EKL
Sbjct: 133 DSPLTKAGRLQAVYVRTEKGVLFEIKPYVRMPRTFKRFCGLMSQLLQKLSITAVGKREKL 192
Query: 377 LRVIEQPVTRH 409
L VI+ PVTR+
Sbjct: 193 LNVIKNPVTRY 203
Score = 57.8 bits (138), Expect(2) = 3e-30
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = +3
Query: 6 GVVGKTAKILNSDEHASFLLKQNKSLDDFRPDILYRALLAI 128
G VGKT +ILNSD+HA++L KQN++ D+RPDI+++ALLAI
Sbjct: 91 GKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAI 131
>ref|XP_002531546.1| Nucleolar essential protein, putative [Ricinus communis]
gi|223528837|gb|EEF30840.1| Nucleolar essential protein,
putative [Ricinus communis]
Length = 294
Score = 99.0 bits (245), Expect(2) = 7e-30
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +2
Query: 197 DSPLCKAGMVQAIYVKVDNGVLFEIKPHVRIPRTIKRFCGLMLELLQKSRITASDNGEKL 376
DSPL KAG +QA+YVK + GVLFE+KP+VRIPRT KRF G+ML+LLQK ITA+ EKL
Sbjct: 143 DSPLNKAGRLQAVYVKTEKGVLFEVKPYVRIPRTYKRFTGIMLQLLQKLSITAAGKREKL 202
Query: 377 LRVIEQPVTRH 409
LRVI+ PVT++
Sbjct: 203 LRVIKNPVTQY 213
Score = 56.6 bits (135), Expect(2) = 7e-30
Identities = 26/39 (66%), Positives = 34/39 (87%)
Frame = +3
Query: 12 VGKTAKILNSDEHASFLLKQNKSLDDFRPDILYRALLAI 128
VGKT +ILNSD+HA+FL K NK+ D+RPDI+Y+ALL+I
Sbjct: 103 VGKTYQILNSDDHANFLRKNNKNPADYRPDIVYQALLSI 141