BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010959
         (2928 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...  1392   0.0  
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]  1388   0.0  
ref|XP_002529848.1| DNA repair and recombination protein RAD26, ...  1344   0.0  
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...  1342   0.0  
ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thal...  1321   0.0  

>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score = 1392 bits (3602), Expect = 0.0
 Identities = 713/981 (72%), Positives = 806/981 (82%), Gaps = 6/981 (0%)
 Frame = +1

Query: 4    KPKRKLKEAQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFH 183
            +PK++LKE   S KD KKR+KT+S+D+DVDFDAVLDAASAGFVETERD+LVRKGILTPFH
Sbjct: 175  RPKKRLKEIPKSGKDLKKRKKTISFDDDVDFDAVLDAASAGFVETERDKLVRKGILTPFH 234

Query: 184  KLKGFERRLQQPGPSRR-TVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDL 360
            KLKGFERRLQQPGPS R  +PEE DK DD+ASA++ARAV+S+S++AQARPTTKLLD++ L
Sbjct: 235  KLKGFERRLQQPGPSSRDNLPEEGDKIDDLASASIARAVQSISESAQARPTTKLLDSETL 294

Query: 361  PKLDAPTHPFRRXXXXXXXXXXXDTETEKKKDRSRRHKRPLPDKKWRKAASREVELSEGS 540
            PKLDAP+HPF R           D+E EK KD+ R+ KRPLP KKWRK  S E EL E S
Sbjct: 295  PKLDAPSHPFHRLKKPLKYPLPLDSEVEKNKDKKRKKKRPLPSKKWRKIISHEEELLEES 354

Query: 541  DEARDSLTTSDNGEEDL-DVEGADDSEPSHVTLDGGLKIPEVFFSKLFDYQKVGVQWLWE 717
            ++  D+L TS N E +  D+E ADD+EP  VTL+GGL+IPE  FSKLFDYQKVGVQWLWE
Sbjct: 355  EDTSDNLVTSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWE 414

Query: 718  LHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPR 897
            LHCQ+ GGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA+KWY  
Sbjct: 415  LHCQQVGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWYQS 474

Query: 898  FRVEILHDSAQVPSNRKGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVL 1077
            F VEILHDSAQ P++RK R +S ES    E SLDSD+E +LS         WD LI RVL
Sbjct: 475  FHVEILHDSAQDPASRKKRAKSYES----EDSLDSDDEENLSSKDTKK---WDSLINRVL 527

Query: 1078 RSESGLLITTYEQLRLLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMT 1257
            RS+SGLLITTYEQ+RL  GKLLDI+WGYA+LDEGHRIRNPNAE+T++CKQLQTVHRIIMT
Sbjct: 528  RSQSGLLITTYEQIRLQAGKLLDIKWGYAILDEGHRIRNPNAEVTILCKQLQTVHRIIMT 587

Query: 1258 GAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVL 1437
            GAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGY+NATPLQVSTAYRCAVVL
Sbjct: 588  GAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVL 647

Query: 1438 RDLIMPYLLRRMKADVNAHLPKKTEHVLFCSLTVEQRSIYRSFLASSEVEQIFDGNRNSL 1617
            RDLIMPYLLRRMKADVNA LP KTEHVLFCSLT EQRS+YR+FLASSEVEQIFDG+RNSL
Sbjct: 648  RDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTTEQRSVYRAFLASSEVEQIFDGSRNSL 707

Query: 1618 YGIDVMRKICNHPDLLEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQ 1797
            YGIDVMRKICNHPDLLEREH+  NPDYGNP RSGKMKVV  VLK WK+QGHRVLLF+QTQ
Sbjct: 708  YGIDVMRKICNHPDLLEREHAYQNPDYGNPERSGKMKVVAHVLKGWKEQGHRVLLFAQTQ 767

Query: 1798 QMLDILESLLRAGDYTYRRMDGLTPVKQRMTLIDEFNNSNDVFVFILTTKVGGLGTNLIG 1977
            QMLDILE+ L AG Y YRRMDG TP+K RM LIDEFN+S+DVF+FILTTKVGGLGTNL G
Sbjct: 768  QMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFILTTKVGGLGTNLTG 827

Query: 1978 ANRVIIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNK 2157
            ANRVII+DPDWNPSTDMQARERAWRIGQTRDVT+YRLITRGTIEEKVY RQIYKHFLTNK
Sbjct: 828  ANRVIIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNK 887

Query: 2158 VLKNPQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTT- 2334
            +LKNPQQ+RFFKARDMKDLF L DD    STETSNIFSQLS D+NVV  HK+SQ +  + 
Sbjct: 888  ILKNPQQKRFFKARDMKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDSQDKQKSI 947

Query: 2335 ---SSSAAIVSGDTEVGRGARSLVLEPSTTKGKEIDDQKNEELDEETNVLQSLFDAHGIH 2505
               SS A    G  + G  +    + PS +   E DDQ ++E+D+ETN+L+SLFDAH +H
Sbjct: 948  IPVSSHAC---GAVDEGNNS---TIGPSRSGENEKDDQ-SDEMDKETNILRSLFDAHRLH 1000

Query: 2506 SAMNHDVIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGA 2685
            SA+NHD IMNAH +EKMRL+E+AS+VA+RA+EALRQS+MLRSR+SISVPTWTGRSGAAGA
Sbjct: 1001 SAVNHDAIMNAHGDEKMRLEEEASRVAKRASEALRQSQMLRSRESISVPTWTGRSGAAGA 1060

Query: 2686 PSSVRKKFGSTVNSKLVXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQ 2865
            PSSV +KFGSTV+S+L+              SKPN                   RIRG Q
Sbjct: 1061 PSSVSRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAGASAGKALSSAELLARIRGNQ 1120

Query: 2866 EIAVGSGLEHQFDLASSSSNR 2928
            E A   GLEHQ  L SSS+NR
Sbjct: 1121 ERATDDGLEHQ--LGSSSANR 1139


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score = 1388 bits (3593), Expect = 0.0
 Identities = 709/979 (72%), Positives = 803/979 (82%), Gaps = 4/979 (0%)
 Frame = +1

Query: 4    KPKRKLKEAQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFH 183
            +PK++LKE   S KD KKR+KT+S+D+DVDFDAVLDAASAGFVETERD+LVRKGILTPFH
Sbjct: 197  RPKKRLKEIPKSGKDLKKRKKTISFDDDVDFDAVLDAASAGFVETERDKLVRKGILTPFH 256

Query: 184  KLKGFERRLQQPGPSRR-TVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDL 360
            KLKGFERRLQQPGPS R  +PEE DK DD+ASA++ARAV+S+S++AQARPTTK+LD++ L
Sbjct: 257  KLKGFERRLQQPGPSSRGNLPEEGDKIDDLASASIARAVQSISESAQARPTTKMLDSETL 316

Query: 361  PKLDAPTHPFRRXXXXXXXXXXXDTETEKKKDRSRRHKRPLPDKKWRKAASREVELSEGS 540
            PKLDAP+HPF R           D+E EK KD+ R+ KRPLP KKWRK  S E EL E S
Sbjct: 317  PKLDAPSHPFHRLKKPLKYPLPLDSEVEKNKDKKRKKKRPLPGKKWRKIISHEEELLEES 376

Query: 541  DEARDSLTTSDNGEEDL-DVEGADDSEPSHVTLDGGLKIPEVFFSKLFDYQKVGVQWLWE 717
            ++  D+L TS N E +  D+E ADD+EP  VTL+GGL+IPE  FSKLFDYQKVGVQWLWE
Sbjct: 377  EDTSDNLVTSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWE 436

Query: 718  LHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPR 897
            LHCQ+ GGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA+KWY  
Sbjct: 437  LHCQQVGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWYQS 496

Query: 898  FRVEILHDSAQVPSNRKGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVL 1077
            F VEILHDSAQ P++RK R +S ES    E SLDSD+E +LS         WD LI RVL
Sbjct: 497  FHVEILHDSAQDPASRKKRAKSYES----EDSLDSDDEENLSSKDTKK---WDSLINRVL 549

Query: 1078 RSESGLLITTYEQLRLLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMT 1257
            RS+SGLLITTYEQ+RL  GKLLDI+WGYA+LDEGHRIRNPNAE+T++CKQLQTVHRIIMT
Sbjct: 550  RSQSGLLITTYEQIRLQAGKLLDIKWGYAILDEGHRIRNPNAEVTILCKQLQTVHRIIMT 609

Query: 1258 GAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVL 1437
            GAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGY+NATPLQVSTAYRCAVVL
Sbjct: 610  GAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVL 669

Query: 1438 RDLIMPYLLRRMKADVNAHLPKKTEHVLFCSLTVEQRSIYRSFLASSEVEQIFDGNRNSL 1617
            RDLIMPYLLRRMKADVNA LP KTEHVLFCSLT EQRS+YR+FLASSEVEQIFDG+RNSL
Sbjct: 670  RDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTTEQRSVYRAFLASSEVEQIFDGSRNSL 729

Query: 1618 YGIDVMRKICNHPDLLEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQ 1797
            YGIDVMRKICNHPDLLEREH+  NPDYGNP RSGKMKVV  VLK WK+QGHRVLLF+QTQ
Sbjct: 730  YGIDVMRKICNHPDLLEREHAYQNPDYGNPERSGKMKVVAHVLKGWKEQGHRVLLFAQTQ 789

Query: 1798 QMLDILESLLRAGDYTYRRMDGLTPVKQRMTLIDEFNNSNDVFVFILTTKVGGLGTNLIG 1977
            QMLDILE+ L AG Y YRRMDG TP+K RM LIDEFN+S+DVF+FILTTKVGGLGTNL G
Sbjct: 790  QMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFILTTKVGGLGTNLTG 849

Query: 1978 ANRVIIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNK 2157
            ANRVII+DPDWNPSTDMQARERAWRIGQTRDVT+YRLITRGTIEEKVY RQIYKHFLTNK
Sbjct: 850  ANRVIIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNK 909

Query: 2158 VLKNPQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTTS 2337
            +LKNPQQ+RFFKARDMKDLF L DD    STETSNIFSQLS D+NVV  HK++Q +    
Sbjct: 910  ILKNPQQKRFFKARDMKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDNQDK---Q 966

Query: 2338 SSAAIVSGDT--EVGRGARSLVLEPSTTKGKEIDDQKNEELDEETNVLQSLFDAHGIHSA 2511
             S   VS      V  G  S +   S+  G+   D +++E+D+ETN+L+SLFDAH +HSA
Sbjct: 967  KSIIPVSSHACGAVDEGNNSTI--GSSRSGENEKDDQSDEMDKETNILRSLFDAHRLHSA 1024

Query: 2512 MNHDVIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPS 2691
            +NHD IMNAH +EKMRL+E+AS+VA+RA+EALRQS+MLRSR+SISVPTWTGRSGAAGAPS
Sbjct: 1025 VNHDAIMNAHGDEKMRLEEEASRVAKRASEALRQSQMLRSRESISVPTWTGRSGAAGAPS 1084

Query: 2692 SVRKKFGSTVNSKLVXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEI 2871
            SV +KFGSTV+S+L+              SKPN                   RIRG QE 
Sbjct: 1085 SVSRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAGASAGKALSSAELLARIRGNQER 1144

Query: 2872 AVGSGLEHQFDLASSSSNR 2928
            A   GLEHQ  L SSS+NR
Sbjct: 1145 ATDDGLEHQ--LGSSSANR 1161


>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
            communis] gi|223530676|gb|EEF32549.1| DNA repair and
            recombination protein RAD26, putative [Ricinus communis]
          Length = 1230

 Score = 1344 bits (3479), Expect = 0.0
 Identities = 694/977 (71%), Positives = 783/977 (80%), Gaps = 4/977 (0%)
 Frame = +1

Query: 10   KRKLKEAQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFHKL 189
            KRK KE Q   K+ +K Q+TVS+ +D DFD +LDAASAGFVETERDELVRKGILTPFH+L
Sbjct: 176  KRKSKEVQKPGKNKEKNQRTVSFSDDTDFDTMLDAASAGFVETERDELVRKGILTPFHQL 235

Query: 190  KGFERRLQQPGPSRR-TVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPK 366
            KGFER LQQ GPS      EEED++ D+AS ++ARA +SM +AA+ARP TKLLD+  +PK
Sbjct: 236  KGFERCLQQLGPSSGCNASEEEDRSHDLASDSIARAAQSMLEAAKARPVTKLLDSDAVPK 295

Query: 367  LDAPTHPFRRXXXXXXXXXXXDTETEKKKDRSRRHKRPLPDKKWRKAASREVELSEGSDE 546
            LDAPT PF+R           +  ++K K   R+ KRPLP +KWRK  +RE    E S+ 
Sbjct: 296  LDAPTRPFQRLKTPLQFPHSLENASDKTKGSKRKTKRPLPGQKWRKRITREENHLEESEC 355

Query: 547  ARDSLTTSDNGEEDL-DVEGADDSEPSHVTLDGGLKIPEVFFSKLFDYQKVGVQWLWELH 723
             +++  TS   EE L D E  D  + S + L+GGLKIPE  FSKLF+YQKVGVQWLWELH
Sbjct: 356  TKNNSVTSSTEEEKLEDEEDVDGDDTSLIELEGGLKIPEAIFSKLFEYQKVGVQWLWELH 415

Query: 724  CQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFR 903
            CQRAGGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA KWYPRF 
Sbjct: 416  CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAEKWYPRFH 475

Query: 904  VEILHDSAQVPSNRKGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLRS 1083
            VE+LHDSAQ   + K R +S +SD ++E SLDSD E ++S         WD LI RVL+S
Sbjct: 476  VELLHDSAQDLPHGK-RAKSFDSDNESEGSLDSDYEGNISSKKANK---WDSLINRVLKS 531

Query: 1084 ESGLLITTYEQLRLLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGA 1263
            E+GLLITTYEQLRLLG KLLDIEWGYAVLDEGHRIRNPNAE+TL+CKQLQTVHRIIMTGA
Sbjct: 532  EAGLLITTYEQLRLLGEKLLDIEWGYAVLDEGHRIRNPNAEVTLICKQLQTVHRIIMTGA 591

Query: 1264 PIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLRD 1443
            PIQNKL+ELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGY+NA+PLQVSTAYRCAVVLRD
Sbjct: 592  PIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRD 651

Query: 1444 LIMPYLLRRMKADVNAHLPKKTEHVLFCSLTVEQRSIYRSFLASSEVEQIFDGNRNSLYG 1623
            LIMPYLLRRMK DVNA LPKKTEHVLFCSLT EQRS+YR+FLAS+EVEQI DG+RNSLYG
Sbjct: 652  LIMPYLLRRMKVDVNAQLPKKTEHVLFCSLTAEQRSVYRAFLASTEVEQIIDGSRNSLYG 711

Query: 1624 IDVMRKICNHPDLLEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQM 1803
            IDVMRKICNHPDLLEREHS  NPDYGNP RSGKM+VV QVLKVW++QGHRVLLF+QTQQM
Sbjct: 712  IDVMRKICNHPDLLEREHSCQNPDYGNPDRSGKMRVVAQVLKVWREQGHRVLLFAQTQQM 771

Query: 1804 LDILESLLRAGDYTYRRMDGLTPVKQRMTLIDEFNNSNDVFVFILTTKVGGLGTNLIGAN 1983
            LDILE  L +G Y+YRRMDGLTP+KQRM LIDEFNNSNDVF+FILTTKVGGLGTNL GAN
Sbjct: 772  LDILEIFLNSGGYSYRRMDGLTPIKQRMALIDEFNNSNDVFIFILTTKVGGLGTNLTGAN 831

Query: 1984 RVIIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVL 2163
            RVIIFDPDWNPSTDMQARERAWRIGQ RDVT+YRLITRGTIEEKVYHRQIYKHFLTNK+L
Sbjct: 832  RVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 891

Query: 2164 KNPQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRNTTSSS 2343
            KNPQQRRFFKARDMKDLFTL DD   G TETSNIFSQLS ++NVV   KE + +      
Sbjct: 892  KNPQQRRFFKARDMKDLFTLNDDGGSGLTETSNIFSQLSEEVNVVGAKKEKEDKKKHYKG 951

Query: 2344 AAIVSGDTEVGRGARSLVLEPS--TTKGKEIDDQKNEELDEETNVLQSLFDAHGIHSAMN 2517
            +A  + D  + +   S  + PS    KGKE  +  + E+DEETN+L+SL DA GIHSA+N
Sbjct: 952  SASHADDAALDK-ENSPEIGPSHRKGKGKEKANHSDGEVDEETNILRSLIDAQGIHSAVN 1010

Query: 2518 HDVIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSV 2697
            HD IMNAHDEEK RL+EQASQVAQRAAEALRQSRMLRS DS+SVPTWTG+SG AGAPSSV
Sbjct: 1011 HDAIMNAHDEEKTRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGKSGTAGAPSSV 1070

Query: 2698 RKKFGSTVNSKLVXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEIAV 2877
            R+KFGSTVNS+L+             TS  N                   RIRG QE AV
Sbjct: 1071 RRKFGSTVNSQLIRSSDVSSNK----TSSMNGMGVGASAGKALSSAELLARIRGNQERAV 1126

Query: 2878 GSGLEHQFDLASSSSNR 2928
            G+GLE QF LAS+S+NR
Sbjct: 1127 GAGLEQQFGLASTSANR 1143


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857105|gb|EEE94652.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1206

 Score = 1342 bits (3474), Expect = 0.0
 Identities = 698/977 (71%), Positives = 779/977 (79%), Gaps = 5/977 (0%)
 Frame = +1

Query: 4    KPKRKLKEAQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFH 183
            +PK+K K+   S K+ +K+QKTVS+ +D DFD +LD AS+GFVETERDELVRKGILTPFH
Sbjct: 171  RPKKKSKKVLKSGKNKEKQQKTVSFADDADFDLMLDGASSGFVETERDELVRKGILTPFH 230

Query: 184  KLKGFERRLQQPGPSR-RTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDL 360
            +LKGFERRLQQPG S  +    EEDKTD + S +V RA  SM +AA+ARPTTKLLD++ L
Sbjct: 231  QLKGFERRLQQPGSSSGKNESIEEDKTDGLDSDSVVRAAHSMLEAAKARPTTKLLDSEAL 290

Query: 361  PKLDAPTHPFRRXXXXXXXXXXXDTETEKKKDRSRRHKRPLPDKKWRKAASREVELSEGS 540
            PKLDAPT PF+R           + + EK+K   R+ KRPLP KKWRK+AS E ++ E  
Sbjct: 291  PKLDAPTRPFQRLKTPLKACQSPERDAEKRKGSERKRKRPLPGKKWRKSASWE-DMGESE 349

Query: 541  DEARDSLTTSDNGEEDLDVEGADDSEPSHVTLDGGLKIPEVFFSKLFDYQKVGVQWLWEL 720
            D  R+ +T+    EED+D +G D+  P  +TL+GGLKIPE  FSKLFDYQKVGVQWLWEL
Sbjct: 350  DSGRNLVTSIS--EEDVD-DGYDNDSP-FITLEGGLKIPEAIFSKLFDYQKVGVQWLWEL 405

Query: 721  HCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRF 900
            HCQRAGGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI+VCPVTLLRQW+REA+KWYPRF
Sbjct: 406  HCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPRF 465

Query: 901  RVEILHDSAQVPSNR----KGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIG 1068
             VE+LHDSAQ  S R    K R QS ESDC+TE SLDSD E S+S         WD LI 
Sbjct: 466  HVELLHDSAQDVSCRDPLKKKRAQSYESDCETEDSLDSDYEGSISCRKANK---WDSLIN 522

Query: 1069 RVLRSESGLLITTYEQLRLLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRI 1248
            RV  S+SGLLITTYEQLRLLG KLLD EWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRI
Sbjct: 523  RVFESDSGLLITTYEQLRLLGEKLLDFEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRI 582

Query: 1249 IMTGAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCA 1428
            IMTGAPIQNKL ELWSLFDFVFPGKLGV+PVFEAEFAVPISVGGY+NA+PLQVSTAYRCA
Sbjct: 583  IMTGAPIQNKLTELWSLFDFVFPGKLGVMPVFEAEFAVPISVGGYANASPLQVSTAYRCA 642

Query: 1429 VVLRDLIMPYLLRRMKADVNAHLPKKTEHVLFCSLTVEQRSIYRSFLASSEVEQIFDGNR 1608
            VVLRDLIMPYLLRRMK DVNAHLPKKTEHVLFCSLT EQRS+YR+FLAS+EVE I DG+R
Sbjct: 643  VVLRDLIMPYLLRRMKMDVNAHLPKKTEHVLFCSLTSEQRSVYRAFLASTEVENILDGSR 702

Query: 1609 NSLYGIDVMRKICNHPDLLEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFS 1788
            NSLYGIDVMRKICNHPDLLEREHS +NPDYGNP RSGKMKVV QVLKVW++QGHRVLLF+
Sbjct: 703  NSLYGIDVMRKICNHPDLLEREHSYHNPDYGNPERSGKMKVVAQVLKVWQEQGHRVLLFT 762

Query: 1789 QTQQMLDILESLLRAGDYTYRRMDGLTPVKQRMTLIDEFNNSNDVFVFILTTKVGGLGTN 1968
            QTQQMLDI E+ L +G Y YRRMDG TP+K RM++IDEFNNS D+F+FILTTKVGGLGTN
Sbjct: 763  QTQQMLDIFENFLNSGGYNYRRMDGSTPIKLRMSIIDEFNNSGDIFIFILTTKVGGLGTN 822

Query: 1969 LIGANRVIIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFL 2148
            L GANRVIIFDPDWNPSTDMQARERAWRIGQ +DVT+YRLIT GTIEEKVYHRQIYKHFL
Sbjct: 823  LTGANRVIIFDPDWNPSTDMQARERAWRIGQKKDVTVYRLITGGTIEEKVYHRQIYKHFL 882

Query: 2149 TNKVLKNPQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQGRN 2328
            TNK+LKNPQQRRFF+ARDMKDLFTL DD  GGSTETSNIFSQLS D+NVV T KE   + 
Sbjct: 883  TNKILKNPQQRRFFRARDMKDLFTLNDDGEGGSTETSNIFSQLSEDVNVVGTKKEKLKKR 942

Query: 2329 TTSSSAAIVSGDTEVGRGARSLVLEPSTTKGKEIDDQKNEELDEETNVLQSLFDAHGIHS 2508
              +   A  + D                   KE  D  + E+DEETN+L+SLFDA+GIHS
Sbjct: 943  KKNKGIAQHADDAI-----------------KEKADCSDGEVDEETNILKSLFDANGIHS 985

Query: 2509 AMNHDVIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAP 2688
            A+NHDVIMNAHD EKMRL+EQASQVAQRAAEALRQSRMLRSRDSISVPTWTG+SG AGAP
Sbjct: 986  AVNHDVIMNAHDGEKMRLEEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAP 1045

Query: 2689 SSVRKKFGSTVNSKLVXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQE 2868
            SSVR+KFGSTVNS+L+            L                        RIRG QE
Sbjct: 1046 SSVRQKFGSTVNSQLIKSSDSSSSNKSNL----KGIAAGTSAGKALSSAELLARIRGNQE 1101

Query: 2869 IAVGSGLEHQFDLASSS 2919
             AVG+GL+ QF  ASSS
Sbjct: 1102 RAVGAGLDQQFGFASSS 1118


>ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thaliana]
            gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA
            repair and recombination protein [Arabidopsis thaliana]
            gi|330251711|gb|AEC06805.1| DNA excision repair protein E
            [Arabidopsis thaliana]
          Length = 1187

 Score = 1321 bits (3419), Expect = 0.0
 Identities = 695/981 (70%), Positives = 776/981 (79%), Gaps = 8/981 (0%)
 Frame = +1

Query: 10   KRKLKEAQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFHKL 189
            KRKLKE +   +   K+ K VS+ ED DFDAV D ASAGFVETERDELVRKGILTPFHKL
Sbjct: 162  KRKLKEIRKPSRRDGKKVKVVSFREDTDFDAVFDGASAGFVETERDELVRKGILTPFHKL 221

Query: 190  KGFERRLQQPGPSR-RTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPK 366
             GFERRLQQPGPS  R +PE +D+ +D  S+ + RAV+SMS AA+ARPTTKLLDA+DLPK
Sbjct: 222  DGFERRLQQPGPSNSRNLPEGDDENED--SSIIDRAVQSMSLAAKARPTTKLLDAEDLPK 279

Query: 367  LDAPTHPFRRXXXXXXXXXXXDTETEKKKDRSRRHK-RPLPDKKWRKAASREVELSEGSD 543
            L+ PT PFRR           D E +K+K   +  K RPLP+KKWRK  SRE    +GS 
Sbjct: 280  LEPPTAPFRRLRKLYKTPNSPDNEAKKRKAGKKSKKTRPLPEKKWRKRISREDSSLQGSG 339

Query: 544  EARDSLTTSDNGEEDLD-VEGADDSEPSHVTLDGGLKIPEVFFSKLFDYQKVGVQWLWEL 720
            + R  LTTS   EE+LD  + ADD+E S V L+GGL IPE  F KLFDYQ+VGVQWLWEL
Sbjct: 340  DGRRILTTSSCEEEELDDFDDADDNERSSVQLEGGLNIPECIFRKLFDYQRVGVQWLWEL 399

Query: 721  HCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRF 900
            HCQRAGGIIGDEMGLGKTIQV+SFLG+LHFSKMYKPSII+CPVTLLRQWRREA+KWYP F
Sbjct: 400  HCQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDF 459

Query: 901  RVEILHDSAQVPSNRKGRTQSDESDCDTECSLDSDEEISLSXXXXXXXXXWDLLIGRVLR 1080
             VEILHDSAQ   + KG+ ++ ESD D+E S+DSD E             WD L+ RVL 
Sbjct: 460  HVEILHDSAQDSGHGKGQGKASESDYDSESSVDSDHE-----PKSKNTKKWDSLLNRVLN 514

Query: 1081 SESGLLITTYEQLRLLGGKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTG 1260
            SESGLLITTYEQLRL G KLL+IEWGYAVLDEGHRIRNPN++ITLVCKQLQTVHRIIMTG
Sbjct: 515  SESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTG 574

Query: 1261 APIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYSNATPLQVSTAYRCAVVLR 1440
            APIQNKL ELWSLFDFVFPGKLGVLPVFEAEF+VPI+VGGY+NA+PLQVSTAYRCAVVLR
Sbjct: 575  APIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLR 634

Query: 1441 DLIMPYLLRRMKADVNAHLPKKTEHVLFCSLTVEQRSIYRSFLASSEVEQIFDGNRNSLY 1620
            DLIMPYLLRRMKADVNAHL KKTEHVLFCSLTVEQRS YR+FLASSEVEQIFDGNRNSLY
Sbjct: 635  DLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLY 694

Query: 1621 GIDVMRKICNHPDLLEREHSSNNPDYGNPVRSGKMKVVTQVLKVWKDQGHRVLLFSQTQQ 1800
            GIDVMRKICNHPDLLEREHS  NPDYGNP RSGKMKVV +VLKVWK QGHRVLLFSQTQQ
Sbjct: 695  GIDVMRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQ 754

Query: 1801 MLDILESLLRAGDYTYRRMDGLTPVKQRMTLIDEFNNSNDVFVFILTTKVGGLGTNLIGA 1980
            MLDILES L A +Y+YRRMDGLTPVKQRM LIDEFNNS D+FVF+LTTKVGGLGTNL GA
Sbjct: 755  MLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGA 814

Query: 1981 NRVIIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKV 2160
            NRVIIFDPDWNPS DMQARERAWRIGQ +DVT+YRLITRGTIEEKVYHRQIYKHFLTNK+
Sbjct: 815  NRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI 874

Query: 2161 LKNPQQRRFFKARDMKDLFTLQDDA-VGGSTETSNIFSQLSGDINVVQTHKESQGRNTTS 2337
            LKNPQQRRFFKARDMKDLF L+DD     STETSNIFSQL+ +IN+V    + +  + T 
Sbjct: 875  LKNPQQRRFFKARDMKDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQSDKKPESDTQ 934

Query: 2338 SSAAIVSGDTEVGRGARSLVLEPSTTKGKEIDDQKNEELDEETNVLQSLFDAHGIHSAMN 2517
                +    T  G   ++ V         E+ D+  E +DEETN+L+SLFDAHGIHSA+N
Sbjct: 935  ----LALHKTAEGSSEQTDV---------EMTDKTGEAMDEETNILKSLFDAHGIHSAVN 981

Query: 2518 HDVIMNAHD-EEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSS 2694
            HD IMNA+D EEKMRL+ QASQVAQRAAEALRQSRMLRSR+SISVPTWTGRSG AGAPSS
Sbjct: 982  HDAIMNANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSS 1041

Query: 2695 VRKKFGSTVNSKLVXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEIA 2874
            VR++FGSTVNS+L              ++  N                   RIRG++E A
Sbjct: 1042 VRRRFGSTVNSRLTQTGDKP-------SAIKNGISAGLSSGKAPSSAELLNRIRGSREQA 1094

Query: 2875 VGSGLEH---QFDLASSSSNR 2928
            +G GLE     F  +S SS+R
Sbjct: 1095 IGVGLEQPQSSFPSSSGSSSR 1115