BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010943
         (441 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   124   1e-26
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   120   1e-25
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   115   4e-24
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...   115   5e-24
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   110   2e-22

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/135 (42%), Positives = 87/135 (64%)
 Frame = -2

Query: 422  KYLGALLVL*RKYKQNFQEITTRVLQRMEGWRAKTLSQAGKVTLIKSVTSAIRSHLMSVF 243
            KYLG  ++  R  K+ F E+  RV  R+ GW+ ++LS AG++TL K+V S+I  H+MS  
Sbjct: 612  KYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAI 671

Query: 242  MMPTSTCEKLDSMNSNFFWGQNENNANKTHFISWNKLCQPKSLGGLGTRLALNHNKALIA 63
            ++P ST + LD  +  F WG       K H +SW K+C+PK+ GG+G R A + NKAL+A
Sbjct: 672  LLPVSTLDTLDRYSRTFLWGSTMEK-KKQHLLSWRKICKPKAEGGIGLRSARDMNKALVA 730

Query: 62   KLLWRIIKEPDKRWA 18
            K+ WR++++ +  WA
Sbjct: 731  KVGWRLLQDKESLWA 745


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  120 bits (301), Expect = 1e-25
 Identities = 58/140 (41%), Positives = 87/140 (62%)
 Frame = -2

Query: 422 KYLGALLVL*RKYKQNFQEITTRVLQRMEGWRAKTLSQAGKVTLIKSVTSAIRSHLMSVF 243
           KYLG  ++  R  K  F E+  RV  R+ GW++++LS AG++TL K+V  +I  H MS  
Sbjct: 547 KYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSI 606

Query: 242 MMPTSTCEKLDSMNSNFFWGQNENNANKTHFISWNKLCQPKSLGGLGTRLALNHNKALIA 63
           ++P S  E+LD ++ NF WG       K H +SW K+C+PK+ GGLG R + + N+AL+A
Sbjct: 607 LLPASLLEQLDKVSRNFLWGSTVEK-RKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLA 665

Query: 62  KLLWRIIKEPDKRWASSLIR 3
           K+ WR++ +    WA  L R
Sbjct: 666 KVGWRLLNDKVSLWARVLRR 685


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  115 bits (288), Expect = 4e-24
 Identities = 54/121 (44%), Positives = 75/121 (61%)
 Frame = -2

Query: 383 KQNFQEITTRVLQRMEGWRAKTLSQAGKVTLIKSVTSAIRSHLMSVFMMPTSTCEKLDSM 204
           K  F EI  RV  RM GWR KTLS AG++TL K+V S++  H MS  ++P S   +LD +
Sbjct: 10  KDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQL 69

Query: 203 NSNFFWGQNENNANKTHFISWNKLCQPKSLGGLGTRLALNHNKALIAKLLWRIIKEPDKR 24
           +  F WG       K H + W+K+C PK  GGLG R A + N+ALI+K+ WR+++E +  
Sbjct: 70  SRTFLWGSTAEK-KKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 128

Query: 23  W 21
           W
Sbjct: 129 W 129


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score =  115 bits (287), Expect = 5e-24
 Identities = 57/135 (42%), Positives = 85/135 (62%)
 Frame = -2

Query: 422 KYLGALLVL*RKYKQNFQEITTRVLQRMEGWRAKTLSQAGKVTLIKSVTSAIRSHLMSVF 243
           KYLG  ++  R  K  F +I  ++  R+ GW+ + LS AG+VTL K+V S+I  H MS  
Sbjct: 274 KYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTI 333

Query: 242 MMPTSTCEKLDSMNSNFFWGQNENNANKTHFISWNKLCQPKSLGGLGTRLALNHNKALIA 63
            +P ST + LD ++ +F WG +     K H ISW ++C+P+S GGLG R A + NKAL++
Sbjct: 334 ALPKSTLDGLDKVSRSFLWGSSVTQ-RKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLS 392

Query: 62  KLLWRIIKEPDKRWA 18
           K+ WR+I++    WA
Sbjct: 393 KVGWRLIQDYHSLWA 407


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  110 bits (274), Expect = 2e-22
 Identities = 53/127 (41%), Positives = 83/127 (65%)
 Frame = -2

Query: 425  DKYLGALLVL*RKYKQNFQEITTRVLQRMEGWRAKTLSQAGKVTLIKSVTSAIRSHLMSV 246
            +KYLG   ++ R  K  F  I  R+ ++++GW+ K LS+ GK  LIKSV  AI +++MSV
Sbjct: 751  EKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSV 810

Query: 245  FMMPTSTCEKLDSMNSNFFWGQNENNANKTHFISWNKLCQPKSLGGLGTRLALNHNKALI 66
            F +P+   +++ S+ + F+WG ++ N  K H+ SW+ LC PKS+GGLG R     N++L+
Sbjct: 811  FSLPSGLIDEIHSLLARFWWGSSDTN-RKMHWHSWDTLCYPKSMGGLGFRDLHCFNQSLL 869

Query: 65   AKLLWRI 45
            AK  WR+
Sbjct: 870  AKQAWRL 876