BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010921
         (1232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicag...   138   3e-30
ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [S...   119   1e-24
ref|XP_003612651.1| Replication factor A protein [Medicago trunc...   115   2e-23
ref|NP_001059088.1| Os07g0190600 [Oryza sativa Japonica Group] g...   111   4e-22
gb|AFW86262.1| hypothetical protein ZEAMMB73_440412 [Zea mays]        106   1e-20

>ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
            gi|357477581|ref|XP_003609076.1| Replication factor A 51
            kDa subunit [Medicago truncatula]
            gi|357477673|ref|XP_003609122.1| Replication factor A 51
            kDa subunit [Medicago truncatula]
            gi|355507966|gb|AES89108.1| Replication factor A 51 kDa
            subunit [Medicago truncatula] gi|355510131|gb|AES91273.1|
            Replication factor A 51 kDa subunit [Medicago truncatula]
            gi|355510177|gb|AES91319.1| Replication factor A 51 kDa
            subunit [Medicago truncatula]
          Length = 502

 Score =  138 bits (348), Expect = 3e-30
 Identities = 110/395 (27%), Positives = 193/395 (48%), Gaps = 18/395 (4%)
 Frame = -2

Query: 1135 YNLIKQVTKSVRNLKLRVRIDRSWDHY-LVGNETLLSKDMILIDEK------GDQINASI 977
            +  + +++ +  + K++VR+ R WD   +   + ++S DM+LIDEK       + I+A+I
Sbjct: 20   HTFLNKLSNAAPDTKIKVRVARMWDTLNITKKKEIISTDMVLIDEKVFINEIANCIHATI 79

Query: 976  PMEIYPQFKEKVQDGSVVHLEKFTV-KNVRSYCPV-NNKNNITF--EKYTTMRNISDETS 809
            P    P  K+ +Q+G +  +  F V KN   Y  V NN + ++F  +   T    SD+ +
Sbjct: 80   PRRFSPSLKKVLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEG-SDDNT 138

Query: 808  IPRQLFSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQKNVHTRMGQSDKKSIYIDNERM 629
            IPR +F FV+F  L  R  + E L DVIGF  ++  +++   T  G+ D  S+++ +   
Sbjct: 139  IPRYIFEFVNFNDLIKRCGK-EVLADVIGFIIDVDPIEEKT-TVNGKVDMLSLHLGDGSG 196

Query: 628  ECLEITFWGDRIKQIPQVLTKN---GPRDIITV-TSTTVRLFSGKYVL--QATPATKVYI 467
              L++T W D      Q L       P+  + + TST V+ + G   L   ++ +T +YI
Sbjct: 197  NVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYI 256

Query: 466  NLETDDAHTLKNSSNNPRAELPISRKRPSIYATEAIQVKNLEEIDTLLLSTSSVGKR-YK 290
            N++T +   L  SS    + L    K     +   + VK + E+ ++ +S    G   Y 
Sbjct: 257  NIDTPEVADLILSSKGKNSVL----KTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYN 312

Query: 289  FKAKISDIDNKYNWHYNCCESDQCRRKVELKYPEWWCDYCSISMKEPTKRYKVQFEIEDS 110
              A + DI  K   +Y  C    CR+ V     ++ C++C+  +  P  RY+++ ++ DS
Sbjct: 313  CVATVDDILLKNGLYYVSCP--HCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDS 370

Query: 109  TCKKLITTFDDEAEYLLQRPLDELLKIEKQENGFD 5
            T   +   F + AE L Q  LD+L    + + G D
Sbjct: 371  TESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRD 405


>ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
            gi|241915229|gb|EER88373.1| hypothetical protein
            SORBIDRAFT_10g016776 [Sorghum bicolor]
          Length = 958

 Score =  119 bits (299), Expect = 1e-24
 Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 8/358 (2%)
 Frame = -2

Query: 1084 VRIDRSWDHYLVGNET-LLSKDMILIDEKGDQINASIPMEIYPQFKEKVQDGSVVHLEKF 908
            VR  R WD Y   +E+ LL  D++LIDE+G+ I+A I    + QFK  +++GSV +L  F
Sbjct: 478  VRASRFWDFYDPHDESKLLHCDLVLIDEEGNCIHAQIYPPDHEQFKPLIKEGSVYNLSYF 537

Query: 907  TVKNVRSYCPVNNKNNITFEKYTTMRNISD-ETSIPRQLFSFVDFKKLAPRDKQDEFLTD 731
             V+    Y PV+N + I F ++T+   + +   + P   +S    ++L P  ++  F TD
Sbjct: 538  RVRKSGKYRPVDNDHMINFTRWTSAEEVVEIPPAFPMYTYSLTPMEQLPPCAEETTFFTD 597

Query: 730  VIGFYNNIGELQK-NVHTRMGQSDKKSIYIDNERMECLEITFWGDRIKQIP--QVLTKNG 560
            VIG    +  +    + TR  +S K+++ I N     L++  WG+R    P  QV     
Sbjct: 598  VIGVVTMLSNVSSLRIRTRQSESLKRTVTICNASGASLDVVLWGERATAFPAEQVHRDRT 657

Query: 559  PRDIITVTSTTVRLFSGKYVLQATPATKVYINLETDDAHTLKNSSNNPRAELPISRKRPS 380
                +      V+ ++    L   P+ K YIN E  +A  L  S +N    +   +   S
Sbjct: 658  TPQTVIFVGALVKSYADNVSLSGGPSCKWYINFEVPEAKALAASGSNIYQPVKWEQHMAS 717

Query: 379  IYATEAIQVKNLEEIDTLLLSTSSVGK-RYKFKAKISDIDNKYNWHYNCCESDQCRRKVE 203
                     ++ +  D  LL      K  +     +  ID   +W YN C+  +C +   
Sbjct: 718  SEPVAFAPPEHKKVSDIKLLHPFKYKKTEWLVTVTVQKIDK--SWWYNACK--KCLKTAR 773

Query: 202  LKYPEWWC--DYCSISMKEPTKRYKVQFEIEDSTCKKLITTFDDEAEYLLQRPLDELL 35
              +  + C    C  ++  P  RYK+     D T       F   A+ L ++P+D L+
Sbjct: 774  PFHDSFRCTEPKCG-TIGVPVPRYKLCISAGDETGDTEFVIFGRIAQRLTRKPVDTLI 830


>ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
            gi|355513986|gb|AES95609.1| Replication factor A protein
            [Medicago truncatula]
          Length = 477

 Score =  115 bits (288), Expect = 2e-23
 Identities = 95/340 (27%), Positives = 163/340 (47%), Gaps = 11/340 (3%)
 Frame = -2

Query: 991  INASIPMEIYPQFKEKVQDGSVVHLEKFTV-KNVRSYCPV-NNKNNITF--EKYTTMRNI 824
            I+A+IP    P  K+ +Q+G +  +  + V KN   Y  V NN + ++F  +   T    
Sbjct: 43   IHATIPRRFSPSLKKVLQEGKIYVISHYEVSKNKEKYAVVENNPSMLSFYGDAIVTEEG- 101

Query: 823  SDETSIPRQLFSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQKNVHTRMGQSDKKSIYI 644
            SD+ +IPR +F FV+F  L  R  + E L DVIGF  ++  +++   T  G+ D  S+++
Sbjct: 102  SDDNTIPRYIFEFVNFNDLIKRCGK-EVLADVIGFIIDVDPIEEKT-TVNGKVDMLSLHL 159

Query: 643  DNERMECLEITFWGDRIKQIPQVLTKN---GPRDIITV-TSTTVRLFSGKYVL--QATPA 482
             +     L++T W D      Q L       P+  + + TST V+ + G   L   ++ +
Sbjct: 160  GDGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRS 219

Query: 481  TKVYINLETDDAHTLKNSSNNPRAELPISRKRPSIYATEAIQVKNLEEIDTLLLSTSSVG 302
            T +YIN++T +   L  SS    + L    K     +   + VK + E+ ++ +S    G
Sbjct: 220  TTIYINIDTPEVADLILSSKGENSVL----KTTETLSLTNVDVKTISELLSMAVSGVYQG 275

Query: 301  KR-YKFKAKISDIDNKYNWHYNCCESDQCRRKVELKYPEWWCDYCSISMKEPTKRYKVQF 125
               Y   A + DI  K   +Y  C    CR+ V     ++ C++C+  +  P  RY+++ 
Sbjct: 276  DVVYNCVATVDDILLKNGLYYVSCP--HCRKTVSSTETDFNCEHCTKKVDYPKIRYRLEL 333

Query: 124  EIEDSTCKKLITTFDDEAEYLLQRPLDELLKIEKQENGFD 5
            ++ DST   +   F + AE L Q  LD+L    + + G D
Sbjct: 334  QVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRD 373


>ref|NP_001059088.1| Os07g0190600 [Oryza sativa Japonica Group]
            gi|34394551|dbj|BAC83855.1| DNA binding protein-like
            [Oryza sativa Japonica Group]
            gi|113610624|dbj|BAF21002.1| Os07g0190600 [Oryza sativa
            Japonica Group]
          Length = 544

 Score =  111 bits (277), Expect = 4e-22
 Identities = 97/381 (25%), Positives = 171/381 (44%), Gaps = 13/381 (3%)
 Frame = -2

Query: 1135 YNLIKQVTKSVRNLKLRVRIDRSWDHYLVGNET---LLSKDMILIDEKGDQINASIPMEI 965
            Y+L+ Q+  +  N +++VR+ RSW  +L G        + ++IL+DE+G  I A +    
Sbjct: 3    YSLLSQINSTRHNWRIKVRVARSW--HLSGTSKRRDFTALELILVDEEGVGITACVGENE 60

Query: 964  YPQFKEKVQDGSVVHLEKFTV-KNVRSYCPVNNKNNITFEKYTTMRNISDETS--IPRQL 794
              +F   + +G    L  F V +  +    V +   I F  +T +  I  E S  +P  +
Sbjct: 61   IQKFSTSIVEGHAYFLRNFRVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYI 120

Query: 793  FSFVDFKKLAPRDKQDEFLTDVIGFYNNIGELQKNVHTRMGQSDKKSIYIDNERMECLEI 614
            F+FVDF+ L  R +    L DVIG    +  L ++ +   G S ++++ + +     LEI
Sbjct: 121  FNFVDFEDLDERARHPNGLVDVIGQLTVVHPLVQS-NGLNGPSVRRNVELRDLSDRLLEI 179

Query: 613  TFWGDRIKQ-----IPQVLTKNGPRDIITVTSTTVRLFSGKYVLQATPATKVYINLETDD 449
            T W +         + + + K+ P  II      ++LFSG    +++ ATK YIN++  +
Sbjct: 180  TLWAEHATSFEDEFLIETIGKDEP-VIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPE 238

Query: 448  AHTLKNSSNNPRAELPISRKRPSIYATEAIQVKNLEEIDTLLLST--SSVGKRYKFKAKI 275
             +  + S      E+ +     +          N + I  LL      +   R+   A+I
Sbjct: 239  INAFRTSLQGRGCEVLLVPSDGAALGAANEADANRKSISELLSLNPHDNNDVRFTCDARI 298

Query: 274  SDIDNKYNWHYNCCESDQCRRKVELKYPEWWCDYCSISMKEPTKRYKVQFEIEDSTCKKL 95
             +ID    W Y  C    CR+ V+     + C  C  +    T  YK+   IED+T +  
Sbjct: 299  KEIDVSSGWWYKACSI--CRKGVKPTLQGFECVNCDNTEPIITPSYKLNVVIEDNTDRAK 356

Query: 94   ITTFDDEAEYLLQRPLDELLK 32
            I  F   AE +++R   +L++
Sbjct: 357  IFMFGGMAEQVVRRTAADLVE 377


>gb|AFW86262.1| hypothetical protein ZEAMMB73_440412 [Zea mays]
          Length = 629

 Score =  106 bits (265), Expect = 1e-20
 Identities = 91/362 (25%), Positives = 163/362 (45%), Gaps = 9/362 (2%)
 Frame = -2

Query: 1093 KLRVRIDRSWDHYLVGNET-LLSKDMILIDEKGDQINASIPMEIYPQFKEKVQDGSVVHL 917
            +L VR+ R W+ Y   +E+ LL  DM+LIDE+G   +A I   +   FK  +++G+V ++
Sbjct: 155  RLCVRVSRMWEFYDPQDESKLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNV 214

Query: 916  EKFTVKNV-RSYCPVNNKNNITFEKYTTMRNISD-ETSIPRQLFSFVDFKKLAPRDKQDE 743
                +K   R Y  V+N   I F K+TT+  + +   + P  ++S   F +L       E
Sbjct: 215  SYVQIKKANRMYKLVDNDIMIGFTKWTTVEELIEVPPAFPELVYSLTPFDQLTTLVDIRE 274

Query: 742  FLTDVIGFYNNIGELQKNVHTRMGQSD--KKSIYIDNERMECLEITFWGDRIKQIPQVLT 569
            +  DVIG    I ++   + T+M Q+   K+S+ I NE    LE+  WG++    P    
Sbjct: 275  YFIDVIGAVTMISDV-ATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQI 333

Query: 568  KNGPRD---IITVTSTTVRLFSGKYVLQATPATKVYINLETDDAHTLKNSSNNPRAELPI 398
                +D   II    T  R ++G   L    + K Y+N +  +A +L  S  + R+  PI
Sbjct: 334  SIAGQDSLQIIIFVGTLARSYAGTTSLTCGSSCKWYVNPQVPEATSLAASLQHKRS--PI 391

Query: 397  SRKRPSIYATEAIQVKNLEEIDTLLLSTSSVGKRYKFKAKISDIDNKYNWHYNCCESDQC 218
                 S      I     +++  +        ++ ++   ++ +     W Y  C   +C
Sbjct: 392  MAVAGSTQRVTRISTAEHKKVSEIKHMHPFKHEKVEWLITVTVLKIDQLWWYESCR--KC 449

Query: 217  RRKVELKYPEWWC-DYCSISMKEPTKRYKVQFEIEDSTCKKLITTFDDEAEYLLQRPLDE 41
             +K +     + C D     +  P  RY++     D T +     F   A++++++PLD 
Sbjct: 450  LKKTKPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGRMAQHIVKKPLDI 509

Query: 40   LL 35
            L+
Sbjct: 510  LI 511