BLASTX nr result
ID: Coptis23_contig00010870
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010870
(2009 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002512730.1| pentatricopeptide repeat-containing protein,... 508 e-141
emb|CBI25186.3| unnamed protein product [Vitis vinifera] 504 e-140
ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containi... 504 e-140
ref|XP_002332054.1| predicted protein [Populus trichocarpa] gi|2... 500 e-139
ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containi... 484 e-134
>ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547741|gb|EEF49233.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 552
Score = 508 bits (1308), Expect = e-141
Identities = 250/461 (54%), Positives = 331/461 (71%), Gaps = 3/461 (0%)
Frame = -1
Query: 1763 QSFIPPSSSHT-QFFKHHLFPLKPSTFNLELELDQTIHSTLVETLRKTKEFTSETEAMDF 1587
QSF + + + F+H ++ P T L+ETL++ F E EAM
Sbjct: 66 QSFSSQNQKYPFELFEHRIYNHDPLT------------QGLLETLKRAAYFPGEAEAMAC 113
Query: 1586 LDMVEEGVQLDGSLVCSVVWALRNEWELALLGFKWGQKLGCIDSRAWDLMVLVLGQNKRF 1407
+D GV+ + +LV SV+W LR +W+LA LGFKWG+K GCID ++ +L+V +LG +++F
Sbjct: 114 ID--GSGVKANINLVYSVIWELRKDWKLAFLGFKWGEKWGCIDEKSCELIVWILGNHRKF 171
Query: 1406 GTAWCLIRGMHRSSLNVCRALLIMIECYAVANCPGKSIQTFEAMEKFRISQDSKALDTLL 1227
AW +IR MH+ S+N+ + +LIMI+ YA A+ PGK+I+ F MEKF+++ D +A +L+
Sbjct: 172 NNAWIVIRDMHQLSMNIQQTMLIMIDRYAAADNPGKAIEVFNIMEKFKMAPDEEAFYSLM 231
Query: 1226 HSLCKNGNIEEAEEFMQQNKDLLPLRTETFNIILNGWCNISLDLVEAKRVWREMSNCCIM 1047
++LC +G IEEAEEFM NK L PL TE FN+ILNGWC+I ++L+EAKRVWREMS CCI
Sbjct: 232 NALCNHGYIEEAEEFMVVNKKLFPLETEGFNVILNGWCSICVNLLEAKRVWREMSKCCIT 291
Query: 1046 PDAVSYSHMISCFSRVGDLFHSLRLYDEMKKKGWIPDLDVYNSLIYVLTRENCLNEAFNI 867
P+A SY+HMISCFS+VG+LF SLRLYDEMKK+GW+P ++VYNSLIYVLTRENC EA
Sbjct: 292 PNATSYTHMISCFSKVGNLFDSLRLYDEMKKRGWLPGMEVYNSLIYVLTRENCFKEALRF 351
Query: 866 VDKIKEAGLLADSTTYNSMILPLCEAHNLEEAKSVFATMVSMGIDPTSETYHAFLQVESV 687
+DK+KE GL DSTTYNSMI PLCE L EA+SV ATM+ I PT ETYHA L+VE+
Sbjct: 352 LDKMKEVGLQPDSTTYNSMIRPLCEGKKLVEARSVLATMIEENISPTMETYHALLEVENS 411
Query: 686 D--ATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPDNALRMWVEMVRYEIVPDSGHYS 513
D AT+E+L +M AG P TFLL+L K K +Q +NAL+MW+EM +YE+ P+ HY
Sbjct: 412 DFEATLEVLNRMTVAGLAPTDDTFLLVLAKFFKLEQAENALKMWIEMKQYEVTPNLTHYK 471
Query: 512 VMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLKDPV 390
++V GL CG LAKAR+ Y DM+S GF DDPKL+K+LK+PV
Sbjct: 472 ILVEGLVRCGLLAKARECYADMRSNGFTDDPKLQKMLKEPV 512
>emb|CBI25186.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 504 bits (1298), Expect = e-140
Identities = 247/444 (55%), Positives = 323/444 (72%)
Frame = -1
Query: 1658 IHSTLVETLRKTKEFTSETEAMDFLDMVEEGVQLDGSLVCSVVWALRNEWELALLGFKWG 1479
+ S L E L++ + +SE E M LD GV+ + LV +W LR +W LA F WG
Sbjct: 78 LESGLPELLKRLEGLSSEAEVMAVLD--GSGVEPNQELVYWAIWGLREDWRLAYWVFNWG 135
Query: 1478 QKLGCIDSRAWDLMVLVLGQNKRFGTAWCLIRGMHRSSLNVCRALLIMIECYAVANCPGK 1299
+K GC R L++ +LG K+FG AWCLIR +HRSS++ RA+LIMI+ Y AN P K
Sbjct: 136 EKWGCNSERTRGLVIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCK 195
Query: 1298 SIQTFEAMEKFRISQDSKALDTLLHSLCKNGNIEEAEEFMQQNKDLLPLRTETFNIILNG 1119
+I+TF MEKFR+S D +A TLL +LCK+GN+E+AEE M QNK L PL TE FNIILNG
Sbjct: 196 AIKTFHIMEKFRLSPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNG 255
Query: 1118 WCNISLDLVEAKRVWREMSNCCIMPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKKGWIP 939
W N+SLD+ EAKR+WREMS CCI+P+A +Y+ MISCFS+ G+LF SLRL+D+MKK+GWIP
Sbjct: 256 WSNVSLDIFEAKRIWREMSKCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIP 315
Query: 938 DLDVYNSLIYVLTRENCLNEAFNIVDKIKEAGLLADSTTYNSMILPLCEAHNLEEAKSVF 759
L+VYNSLIYVLT ENCL EA I+ KIKE GL DS +YN MI PLC+A LEEA+++
Sbjct: 316 GLEVYNSLIYVLTHENCLTEALKILGKIKEMGLQLDSASYNCMIRPLCKAKKLEEARTIL 375
Query: 758 ATMVSMGIDPTSETYHAFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPD 579
A M+ + PT+ETYHAFL+ S + T E+LK +R AG+GP+G TFLLIL L K QP+
Sbjct: 376 AAMIGENLGPTTETYHAFLEGASYEETFEVLKNLRTAGFGPNGDTFLLILDNLFKLDQPE 435
Query: 578 NALRMWVEMVRYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLK 399
NAL++WVEM ++++VP S HY V++ GL+ GWL KAR+ Y +M+S+GF DDPKL+K+LK
Sbjct: 436 NALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDDPKLKKLLK 495
Query: 398 DPVGSVGEFGKQQGRHREEDTGNR 327
DPV G+ G+++G R+ T R
Sbjct: 496 DPV--EGDSGEREGWMRQGKTDVR 517
>ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Vitis vinifera]
Length = 537
Score = 504 bits (1297), Expect = e-140
Identities = 246/441 (55%), Positives = 322/441 (73%)
Frame = -1
Query: 1658 IHSTLVETLRKTKEFTSETEAMDFLDMVEEGVQLDGSLVCSVVWALRNEWELALLGFKWG 1479
+ S L E L++ + +SE E M LD GV+ + LV +W LR +W LA F WG
Sbjct: 78 LESGLPELLKRLEGLSSEAEVMAVLD--GSGVEPNQELVYWAIWGLREDWRLAYWVFNWG 135
Query: 1478 QKLGCIDSRAWDLMVLVLGQNKRFGTAWCLIRGMHRSSLNVCRALLIMIECYAVANCPGK 1299
+K GC R L++ +LG K+FG AWCLIR +HRSS++ RA+LIMI+ Y AN P K
Sbjct: 136 EKWGCNSERTRGLVIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCK 195
Query: 1298 SIQTFEAMEKFRISQDSKALDTLLHSLCKNGNIEEAEEFMQQNKDLLPLRTETFNIILNG 1119
+I+TF MEKFR+S D +A TLL +LCK+GN+E+AEE M QNK L PL TE FNIILNG
Sbjct: 196 AIKTFHIMEKFRLSPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNG 255
Query: 1118 WCNISLDLVEAKRVWREMSNCCIMPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKKGWIP 939
W N+SLD+ EAKR+WREMS CCI+P+A +Y+ MISCFS+ G+LF SLRL+D+MKK+GWIP
Sbjct: 256 WSNVSLDIFEAKRIWREMSKCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIP 315
Query: 938 DLDVYNSLIYVLTRENCLNEAFNIVDKIKEAGLLADSTTYNSMILPLCEAHNLEEAKSVF 759
L+VYNSLIYVLT ENCL EA I+ KIKE GL DS +YN MI PLC+A LEEA+++
Sbjct: 316 GLEVYNSLIYVLTHENCLTEALKILGKIKEMGLQLDSASYNCMIRPLCKAKKLEEARTIL 375
Query: 758 ATMVSMGIDPTSETYHAFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPD 579
A M+ + PT+ETYHAFL+ S + T E+LK +R AG+GP+G TFLLIL L K QP+
Sbjct: 376 AAMIGENLGPTTETYHAFLEGASYEETFEVLKNLRTAGFGPNGDTFLLILDNLFKLDQPE 435
Query: 578 NALRMWVEMVRYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLK 399
NAL++WVEM ++++VP S HY V++ GL+ GWL KAR+ Y +M+S+GF DDPKL+K+LK
Sbjct: 436 NALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDDPKLKKLLK 495
Query: 398 DPVGSVGEFGKQQGRHREEDT 336
DPV G+ G+++G R+ T
Sbjct: 496 DPV--EGDSGEREGWMRQGKT 514
>ref|XP_002332054.1| predicted protein [Populus trichocarpa] gi|222831940|gb|EEE70417.1|
predicted protein [Populus trichocarpa]
Length = 444
Score = 500 bits (1288), Expect = e-139
Identities = 241/418 (57%), Positives = 308/418 (73%)
Frame = -1
Query: 1610 SETEAMDFLDMVEEGVQLDGSLVCSVVWALRNEWELALLGFKWGQKLGCIDSRAWDLMVL 1431
SE EAM LD E G++ + +LV SV+W LR EW LA L FKWG K GC+D +A +LMV
Sbjct: 7 SEAEAMASLD--ESGIRANQNLVYSVIWELREEWRLAFLAFKWGDKWGCVDEKACELMVW 64
Query: 1430 VLGQNKRFGTAWCLIRGMHRSSLNVCRALLIMIECYAVANCPGKSIQTFEAMEKFRISQD 1251
VLG +++F TAW LIR +HRS ++ +A+LIMI+ YA AN PGK+I F M+KFR++ D
Sbjct: 65 VLGNHRKFNTAWILIRDLHRSLMSTRKAMLIMIDRYAAANVPGKAIYAFRIMDKFRMTPD 124
Query: 1250 SKALDTLLHSLCKNGNIEEAEEFMQQNKDLLPLRTETFNIILNGWCNISLDLVEAKRVWR 1071
+A LL+ LCKNGNIEEAEEFM NK PL E FNIILNGWCNI +D+ EAKR+WR
Sbjct: 125 EEAFYFLLNVLCKNGNIEEAEEFMLVNKKFFPLEVEGFNIILNGWCNICVDVFEAKRIWR 184
Query: 1070 EMSNCCIMPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKKGWIPDLDVYNSLIYVLTREN 891
EMS CI PDA +Y+HMISCFS+VG+LF SLRLYD MKK+GW+P ++VYNSL+Y+LTREN
Sbjct: 185 EMSKYCIDPDATTYTHMISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVYILTREN 244
Query: 890 CLNEAFNIVDKIKEAGLLADSTTYNSMILPLCEAHNLEEAKSVFATMVSMGIDPTSETYH 711
C EA I+DK+KE GL DS TYNSMI PLCEA LE+A+S+ A M+ + PT ETYH
Sbjct: 245 CFKEALKILDKMKETGLQRDSATYNSMIRPLCEAKKLEDARSLMAAMIEENVSPTIETYH 304
Query: 710 AFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPDNALRMWVEMVRYEIVP 531
AFLQ + T E+L +M+ AG GP TFLL+L K K +QP+NAL++WVEM +YE+
Sbjct: 305 AFLQGIVFEETFEVLDRMKIAGLGPTEDTFLLLLAKFFKLEQPENALKIWVEMKQYEVAS 364
Query: 530 DSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLKDPVGSVGEFGKQQG 357
+ HY+VMV GL+ CG L KAR++Y +M+S G+ DDPK++K+LK PV + K+ G
Sbjct: 365 NLTHYTVMVEGLARCGLLTKAREYYAEMRSNGYSDDPKIQKMLKVPVQDKNDKRKKLG 422
>ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
gi|449509164|ref|XP_004163514.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
Length = 547
Score = 484 bits (1246), Expect = e-134
Identities = 238/439 (54%), Positives = 313/439 (71%), Gaps = 1/439 (0%)
Frame = -1
Query: 1655 HSTLVETLRKTKEFTSETEAMDFLDMVEEGVQLDGSLVCSVVWALRNEWELALLGFKWGQ 1476
++ +E ++ SE EA+ LD E V+ D LV S +W LR++W+ +LL FKWG+
Sbjct: 83 NARFIELFKRVALLPSEVEAVAALD--EFDVKADLDLVYSAIWVLRDDWKSSLLAFKWGE 140
Query: 1475 KLGCIDSRAWDLMVLVLGQNKRFGTAWCLIRGMHRSSLNVCRALLIMIECYAVANCPGKS 1296
K+G ID +LM+ VLG +K+F TAW LIR +H S LN +A+L+MI+ YA AN K+
Sbjct: 141 KVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHGSLLNSMQAMLVMIDRYAYANEASKA 200
Query: 1295 IQTFEAMEKFRISQDSKALDTLLHSLCKNGNIEEAEEFMQQNKDLLPLRTETFNIILNGW 1116
I+TF MEKFR++ D +A LL+SLCK GNIEEAEEFM NK L PL TE+FNIILNGW
Sbjct: 201 IKTFHMMEKFRLTPDQEAFHVLLNSLCKYGNIEEAEEFMFVNKKLFPLGTESFNIILNGW 260
Query: 1115 CNISLDLVEAKRVWREMSNCCIMPDAVSYSHMISCFSRVGDLFHSLRLYDEMKKKGWIPD 936
CN+++D+ EAKR+WREMS CCI+PD+ SY+HMISCFS+ G+LF SLR YD+MKK+ WIP
Sbjct: 261 CNVTVDVFEAKRIWREMSKCCILPDSTSYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPS 320
Query: 935 LDVYNSLIYVLTRENCLNEAFNIVDKIKEAGLLADSTTYNSMILPLCEAHNLEEAKSVFA 756
++VYNSL YVLTRENC NEA I++KIKE GL DSTTYNS+I PLCEA L+EAK V
Sbjct: 321 VEVYNSLAYVLTRENCFNEALKILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLT 380
Query: 755 TMVSMGIDPTSETYHAFLQVESVDATVELLKQMREAGYGPDGHTFLLILRKLLKSKQPDN 576
M I PT ETYH+F+Q + ELLK+MR+ G GP TFL++ K + ++P+
Sbjct: 381 MMTEDNISPTIETYHSFIQAADSKMSFELLKRMRQDGLGPTEGTFLIMFNKSFELEEPEY 440
Query: 575 ALRMWVEMVRYEIVPDSGHYSVMVRGLSLCGWLAKARKFYDDMKSRGFPDDPKLEKVLKD 396
AL +WVEM RYE+ P HYSV+++GL+ CG L KAR+ YD+M GF PK++ +LK+
Sbjct: 441 ALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELYDEMILHGFIAHPKIKTLLKE 500
Query: 395 P-VGSVGEFGKQQGRHREE 342
P +GS+ E +QQ RH +
Sbjct: 501 PDLGSIDE-ARQQVRHNNK 518