BLASTX nr result

ID: Coptis23_contig00010830 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010830
         (763 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...   100   6e-19
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    96   6e-18
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    94   2e-17
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    94   2e-17
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    93   7e-17

>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score = 99.8 bits (247), Expect = 6e-19
 Identities = 51/151 (33%), Positives = 77/151 (50%)
 Frame = -2

Query: 756 VNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKLMQWHVVTDDMCILCGQQAETEEHLFF 577
           V WS L+W    IP+HSF   +A+ D L TR +L +W       C+LCG   E+ +HLFF
Sbjct: 124 VGWSGLLWGGGNIPKHSFCAWLAIRDRLGTRGRLSRWDRSIPLSCLLCGGNYESRDHLFF 183

Query: 576 SCSYSQTVWAILLAWGGYNKSRAATWLEELKWVTEHGYGKGVKKDALRLSFNGFMYWVWK 397
           SC +   +W+ +L     +  R   W  EL W+   G GK V++   RL +   +Y++W+
Sbjct: 184 SCHFGWEIWSRILLLKS-SSHRTGYWGVELSWIYNQGIGKSVRRKLWRLLWCATIYFIWQ 242

Query: 396 EGNERIFSNKNCTAAQLAQLIFQDVKTKLHS 304
           E N R+          + QLI   +K +  S
Sbjct: 243 ERNHRLHGGSIREPLVVFQLIRSCIKVRAAS 273


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 96.3 bits (238), Expect = 6e-18
 Identities = 51/171 (29%), Positives = 83/171 (48%)
 Frame = -2

Query: 762 VHVNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKLMQWHVVTDDMCILCGQQAETEEHL 583
           V V W K VWF +RIP+H+FIC +A    L TR +L QW +    +C+LC    ET +HL
Sbjct: 150 VLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHL 209

Query: 582 FFSCSYSQTVWAILLAWGGYNKSRAATWLEELKWVTEHGYGKGVKKDALRLSFNGFMYWV 403
           FF C +S  +W+  +   G         +  L W+      K +    ++L F   +Y +
Sbjct: 210 FFQCQFSNEIWSFFMIRAGMTPPHLFGPI--LLWLKSASSSKNLSL-IIKLLFQASVYLI 266

Query: 402 WKEGNERIFSNKNCTAAQLAQLIFQDVKTKLHSVNYKMQNGPERDQQMHIW 250
           W+E N RI +  + T   + + + Q ++ +L  +  +   G  R   +  W
Sbjct: 267 WRERNCRIHTTHSRTPPTIIKEVQQLIRARLDPICRERPVGLSRSSLLATW 317


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
 Frame = -2

Query: 756  VNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKLMQWHVVTDDMCILCGQQAETEEHLFF 577
            V W  +VWF N +PRHSF+  MA+   L T+ KL ++ +   + C LC +  E   HLFF
Sbjct: 1213 VEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLYRFGIHGPNRCSLCLRNNEDHNHLFF 1272

Query: 576  SCSYSQTVWAILLAWGGYNK----SRAATWLEELKWVTEHGYGKGVKKDALRLSFNGFMY 409
             CSY++ +W     W   ++         W E ++W T   +GK     + +LSF   +Y
Sbjct: 1273 ECSYTKAIW-----WDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVY 1327

Query: 408  WVWKEGNERIFSNKNCTAAQLAQLIFQDVKTKL 310
             VW+E N RIF+  + T   +   I   ++ KL
Sbjct: 1328 HVWQERNARIFAGMSRTPNLVLNQIECIIRDKL 1360


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
 Frame = -2

Query: 756 VNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKLMQWHVVTDDMCILCGQQAETEEHLFF 577
           V W  +VWF N +PRHSF+  MA+   L T+ KL ++ +   + C LC +  E   HLFF
Sbjct: 340 VEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFF 399

Query: 576 SCSYSQTVWAILLAWGGYNK----SRAATWLEELKWVTEHGYGKGVKKDALRLSFNGFMY 409
            CSY++ +W     W   ++         W E ++W T   +GK     + +LSF   +Y
Sbjct: 400 ECSYTKAIW-----WDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVY 454

Query: 408 WVWKEGNERIFSNKNCTAAQLAQLIFQDVKTKL 310
            VW+E N RIF+  + T   +   I   ++ KL
Sbjct: 455 HVWQERNARIFAGMSRTPNLVLNQIECIIRDKL 487


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 92.8 bits (229), Expect = 7e-17
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
 Frame = -2

Query: 756 VNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKLMQWHVVTDDMCILCGQQAETEEHLFF 577
           V W  +VWF N +PRHSF+  M +   L T+ KL ++ +   + C LC +  E   HLFF
Sbjct: 158 VEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFF 217

Query: 576 SCSYSQTVWAILLAWGGYNK----SRAATWLEELKWVTEHGYGKGVKKDALRLSFNGFMY 409
            CSY++ +W     W   ++         W E ++W T   +GK     + +LSF   +Y
Sbjct: 218 ECSYTKAIW-----WDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVY 272

Query: 408 WVWKEGNERIFSNKNCTAAQLAQLIFQDVK 319
            VW+E N RIF+  + T    + L+F  ++
Sbjct: 273 HVWQERNARIFAGLSRT----SNLVFNQIE 298


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