BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010750
         (1119 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22748.3| unnamed protein product [Vitis vinifera]              339   6e-91
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi...   339   6e-91
ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containi...   306   8e-81
gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]              305   2e-80
ref|XP_002894516.1| pentatricopeptide repeat-containing protein ...   305   2e-80

>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  339 bits (870), Expect = 6e-91
 Identities = 154/192 (80%), Positives = 180/192 (93%)
 Frame = +1

Query: 4   NGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLEA 183
           NGFSPD HT+NILLH+LG+G+KPLAAL+L+NHMKEVG +P V+HFT+LIDGLSRAGNL+A
Sbjct: 327 NGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDA 386

Query: 184 CKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIR 363
           CKYFFDEM+K+GCMPDVVCYTVMITGY+VAGE E AQ +F+EMT+KGQLPNV+TYN+MIR
Sbjct: 387 CKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIR 446

Query: 364 GLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYI 543
           GLC A KF+EARSML+EMESRGCNPNF+VY+TLV NL+NAGKL EAHE+I  MVDKGQY+
Sbjct: 447 GLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYV 506

Query: 544 HLLAKFKGYRRC 579
           HLL+KFKGYRRC
Sbjct: 507 HLLSKFKGYRRC 518



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 36/178 (20%), Positives = 76/178 (42%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           + GF     T+ IL+   GE      A+      K     P    + +++  L      +
Sbjct: 221 EQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYK 280

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
             ++ + +M+     PD++ Y +++      G+ ++   + +E+   G  P+ +T+N ++
Sbjct: 281 LVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILL 340

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKG 534
             L    K   A  +L  M+  G +P+ + ++TL+  L  AG L        +M+  G
Sbjct: 341 HLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLG 398


>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  339 bits (870), Expect = 6e-91
 Identities = 154/192 (80%), Positives = 180/192 (93%)
 Frame = +1

Query: 4   NGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLEA 183
           NGFSPD HT+NILLH+LG+G+KPLAAL+L+NHMKEVG +P V+HFT+LIDGLSRAGNL+A
Sbjct: 323 NGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDA 382

Query: 184 CKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMIR 363
           CKYFFDEM+K+GCMPDVVCYTVMITGY+VAGE E AQ +F+EMT+KGQLPNV+TYN+MIR
Sbjct: 383 CKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIR 442

Query: 364 GLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQYI 543
           GLC A KF+EARSML+EMESRGCNPNF+VY+TLV NL+NAGKL EAHE+I  MVDKGQY+
Sbjct: 443 GLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYV 502

Query: 544 HLLAKFKGYRRC 579
           HLL+KFKGYRRC
Sbjct: 503 HLLSKFKGYRRC 514



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 36/178 (20%), Positives = 76/178 (42%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           + GF     T+ IL+   GE      A+      K     P    + +++  L      +
Sbjct: 217 EQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYK 276

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
             ++ + +M+     PD++ Y +++      G+ ++   + +E+   G  P+ +T+N ++
Sbjct: 277 LVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILL 336

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKG 534
             L    K   A  +L  M+  G +P+ + ++TL+  L  AG L        +M+  G
Sbjct: 337 HLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLG 394


>ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Brachypodium distachyon]
          Length = 501

 Score =  306 bits (783), Expect = 8e-81
 Identities = 140/193 (72%), Positives = 167/193 (86%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           KNG +PDLHTYNILLHVLG+GDKPLAALNL+N+M +VGC P V+HFT+LIDGLSRAGNLE
Sbjct: 309 KNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGNLE 368

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
           ACKYFFDEM+K GC PDVVCYTVMITGYV A E E+AQ +FD+M ++G+LPNVYTYN MI
Sbjct: 369 ACKYFFDEMMKKGCEPDVVCYTVMITGYVAAAELEEAQKLFDDMLVRGKLPNVYTYNTMI 428

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQY 540
           RGLC   +FD+A SML++M+ RGC PNF VYSTLVC L+NAGK +EA+ +I  M +KGQY
Sbjct: 429 RGLCIVGEFDKACSMLKDMDLRGCTPNFSVYSTLVCRLRNAGKDAEANNVIKYMANKGQY 488

Query: 541 IHLLAKFKGYRRC 579
           +HLL++F GYRRC
Sbjct: 489 LHLLSRFGGYRRC 501



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 40/178 (22%), Positives = 77/178 (43%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           +NG S    T+++L+   G+       +            P    F +++  L       
Sbjct: 204 ENGLSISARTFHLLICTCGQAGLRRRLVERFIKSSSFNYRPFRNSFNAILHTLLTIEQYS 263

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
             ++   +M+  G  PDV+ Y +++    + G+ ++   + DEM   G  P+++TYN ++
Sbjct: 264 LIEWVHQKMLMEGHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGLTPDLHTYNILL 323

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKG 534
             L    K   A ++L  M   GC P+ + ++ L+  L  AG L        +M+ KG
Sbjct: 324 HVLGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGNLEACKYFFDEMMKKG 381


>gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  305 bits (780), Expect = 2e-80
 Identities = 143/192 (74%), Positives = 165/192 (85%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           K+GFSPDL+TYNILLH L  G+KPLAALNL+NHM+EVG EP VIHFT+LIDGLSRAG LE
Sbjct: 362 KDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLE 421

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
           ACKYF DE VK+GC PDVVCYTVMITGY+  GE EKA+ MF EMT KGQLPNV+TYN+MI
Sbjct: 422 ACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMI 481

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQY 540
           RG C A KF EA ++L+EMESRGCNPNF+VYSTLV NLKNAGK+ EAHE++  MV+KG Y
Sbjct: 482 RGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGHY 541

Query: 541 IHLLAKFKGYRR 576
           +HL++K K YRR
Sbjct: 542 VHLISKLKKYRR 553



 Score = 73.6 bits (179), Expect = 9e-11
 Identities = 43/178 (24%), Positives = 79/178 (44%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           K+G+     T+N+L+   GE       +      K     P    + +++  L      +
Sbjct: 257 KDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYK 316

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
              + +++M++ G  PDV+ Y +++      G+ ++   + DEM   G  P++YTYN ++
Sbjct: 317 LIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILL 376

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKG 534
             L    K   A ++L  M   G  P  I ++TL+  L  AGKL      + + V  G
Sbjct: 377 HHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVG 434


>ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297340358|gb|EFH70775.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 477

 Score =  305 bits (780), Expect = 2e-80
 Identities = 143/192 (74%), Positives = 165/192 (85%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           K+GFSPDL+TYNILLH L  G+KPLAALNL+ HM+EVG EP VIHFT+L+DGLSRAG LE
Sbjct: 285 KDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLE 344

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
           ACKYF DEMVK+GC PDVVCYTVMITGY+  GE EKA+ MF EMT KGQLPNV+TYN+MI
Sbjct: 345 ACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMI 404

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKGQY 540
           RG C A KF EA S+L+EMESRGCNPNF+VYSTLV NL+NAGK+ EAHEI+  MV+KG Y
Sbjct: 405 RGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKGHY 464

Query: 541 IHLLAKFKGYRR 576
           +HL++ FK YRR
Sbjct: 465 VHLISMFKKYRR 476



 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 45/178 (25%), Positives = 80/178 (44%)
 Frame = +1

Query: 1   KNGFSPDLHTYNILLHVLGEGDKPLAALNLMNHMKEVGCEPRVIHFTSLIDGLSRAGNLE 180
           K+G+     T+N+L+   GE       +      K     P    + +++  L      +
Sbjct: 180 KDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYK 239

Query: 181 ACKYFFDEMVKIGCMPDVVCYTVMITGYVVAGEFEKAQTMFDEMTIKGQLPNVYTYNAMI 360
              + +++M++ G  PDV+ Y +++      G+ ++   + DEM   G  P++YTYN ++
Sbjct: 240 LIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILL 299

Query: 361 RGLCAARKFDEARSMLREMESRGCNPNFIVYSTLVCNLKNAGKLSEAHEIITQMVDKG 534
             L    K   A ++L  M   G  P  I ++TLV  L  AGKL      + +MV  G
Sbjct: 300 HHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVG 357