BLASTX nr result
ID: Coptis23_contig00010742
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010742
(1262 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 393 e-131
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 388 e-126
ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 388 e-126
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho... 374 e-125
gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersi... 373 e-125
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 393 bits (1010), Expect(2) = e-131
Identities = 195/319 (61%), Positives = 240/319 (75%), Gaps = 13/319 (4%)
Frame = -3
Query: 1092 PMDYSPAEAKKLPRAVTNEDIIDFFVKNMVDEKLGTICNAHVVQADRSEQGAMDKNCIRL 913
PM Y AEAK+L R V ++DIIDFF KNMV+E LG ICNAHVV AD SE GA+D+NCI+L
Sbjct: 888 PMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKL 947
Query: 912 AKLAATAVDFPQTGRTVTMPQNLKPKVYPDFMGKEDFQSYKSDKILGQLYRKVI--YSD- 742
A+LAATAVDFP+TG+ VTMP +LKPK+YPDFMGKED+QSY S+KILG+LYR+V Y+D
Sbjct: 948 AELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDD 1007
Query: 741 ----------IQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNG 592
+L+ GD+PYDKDLE+ GS+ +I DAW++KCSYDGQL L+ QYKV
Sbjct: 1008 DDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKR 1067
Query: 591 EDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTLDAKNTV 412
E+EVVTGHIWS+ K NSRKQG+LKERLK +YHSLK EF+ FE + D QLT D KN +
Sbjct: 1068 EEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLL 1127
Query: 411 YEQKASAWYQVTYDPKWAMKALGMREAEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTK 232
YEQKASAWYQV Y PKW K++ ++E +A A +LSFAWI A+YL RIKIRC G
Sbjct: 1128 YEQKASAWYQVAYHPKWVNKSMELQEPDAAGC---ASMLSFAWIAADYLARIKIRCRGFD 1184
Query: 231 ELDNQKPINTLAHYLAKKM 175
+D KP+N+L YLA ++
Sbjct: 1185 GVDTSKPVNSLVKYLADRI 1203
Score = 102 bits (254), Expect(2) = e-131
Identities = 49/59 (83%), Positives = 51/59 (86%), Gaps = 4/59 (6%)
Frame = -1
Query: 1262 LHPGDICILEAVDAPGLHHLVDCLVFPQKGDRPQTDEASGS----DLYFVTWDENLVPP 1098
LHPGDI ILEAVDAP LHHL DCLVFPQKGDRP T+EASGS DLYFVTWDENL+PP
Sbjct: 823 LHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 388 bits (996), Expect(2) = e-126
Identities = 187/320 (58%), Positives = 242/320 (75%), Gaps = 8/320 (2%)
Frame = -3
Query: 1110 SCSSRKPMDYSPAEAKKLPRAVTNEDIIDFFVKNMVDEKLGTICNAHVVQADRSEQGAMD 931
S S PM+Y+PAE K L R +T DI++FF KNM++E LGTICNAHVV ADRS+ GA+D
Sbjct: 881 SKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALD 940
Query: 930 KNCIRLAKLAATAVDFPQTGRTVTMPQNLKPKVYPDFMGKEDFQSYKSDKILGQLYRKV- 754
+NCI+L++LAATAVDFP+TG+ VTMP +LKPK+YPDFMGKE QSYKS KILG++YR++
Sbjct: 941 ENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIR 1000
Query: 753 -------IYSDIQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVN 595
+ + +L+ GD+ YD DLE+ G+ FI +AW++KCSYDGQL+ L+GQYKVN
Sbjct: 1001 DAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVN 1060
Query: 594 GEDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTLDAKNT 415
E+E+VTGHIWS+ KY SRKQG+LKE+LKH+Y +LK +F+ FENLG + QLT D +N
Sbjct: 1061 REEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNA 1120
Query: 414 VYEQKASAWYQVTYDPKWAMKALGMREAEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGT 235
+YE+KASAWYQV Y P W K+L +RE +A E +LSF WI A+YL RIKI+C T
Sbjct: 1121 LYEKKASAWYQVAYHPTWLKKSLELREPDAPE---AVPMLSFPWIAADYLARIKIKCRRT 1177
Query: 234 KELDNQKPINTLAHYLAKKM 175
K D KPIN+LA YL+ +M
Sbjct: 1178 KSFDPTKPINSLASYLSDRM 1197
Score = 93.6 bits (231), Expect(2) = e-126
Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 4/59 (6%)
Frame = -1
Query: 1262 LHPGDICILEAVDAPGLHHLVDCLVFPQKGDRPQTDEASGS----DLYFVTWDENLVPP 1098
LHPGD+ ILEAVDAP LHHL DCLVFP+ G+RP T+EASGS DLYF TWD NL+PP
Sbjct: 822 LHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPP 880
>ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 388 bits (996), Expect(2) = e-126
Identities = 187/320 (58%), Positives = 242/320 (75%), Gaps = 8/320 (2%)
Frame = -3
Query: 1110 SCSSRKPMDYSPAEAKKLPRAVTNEDIIDFFVKNMVDEKLGTICNAHVVQADRSEQGAMD 931
S S PM+Y+PAE K L R +T DI++FF KNM++E LGTICNAHVV ADRS+ GA+D
Sbjct: 881 SKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALD 940
Query: 930 KNCIRLAKLAATAVDFPQTGRTVTMPQNLKPKVYPDFMGKEDFQSYKSDKILGQLYRKV- 754
+NCI+L++LAATAVDFP+TG+ VTMP +LKPK+YPDFMGKE QSYKS KILG++YR++
Sbjct: 941 ENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIR 1000
Query: 753 -------IYSDIQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVN 595
+ + +L+ GD+ YD DLE+ G+ FI +AW++KCSYDGQL+ L+GQYKVN
Sbjct: 1001 DAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVN 1060
Query: 594 GEDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTLDAKNT 415
E+E+VTGHIWS+ KY SRKQG+LKE+LKH+Y +LK +F+ FENLG + QLT D +N
Sbjct: 1061 REEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNA 1120
Query: 414 VYEQKASAWYQVTYDPKWAMKALGMREAEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGT 235
+YE+KASAWYQV Y P W K+L +RE +A E +LSF WI A+YL RIKI+C T
Sbjct: 1121 LYEKKASAWYQVAYHPTWLKKSLELREPDAPE---AVPMLSFPWIAADYLARIKIKCRRT 1177
Query: 234 KELDNQKPINTLAHYLAKKM 175
K D KPIN+LA YL+ +M
Sbjct: 1178 KSFDPTKPINSLASYLSDRM 1197
Score = 93.6 bits (231), Expect(2) = e-126
Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 4/59 (6%)
Frame = -1
Query: 1262 LHPGDICILEAVDAPGLHHLVDCLVFPQKGDRPQTDEASGS----DLYFVTWDENLVPP 1098
LHPGD+ ILEAVDAP LHHL DCLVFP+ G+RP T+EASGS DLYF TWD NL+PP
Sbjct: 822 LHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPP 880
>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
[Populus trichocarpa]
Length = 1200
Score = 374 bits (961), Expect(2) = e-125
Identities = 182/313 (58%), Positives = 235/313 (75%), Gaps = 7/313 (2%)
Frame = -3
Query: 1092 PMDYSPAEAKKLPRAVTNEDIIDFFVKNMVDEKLGTICNAHVVQADRSEQGAMDKNCIRL 913
PM Y AEAK L R V ++DII+FF KNMV++ LG ICNAHVV AD SE GA DKNC+ L
Sbjct: 891 PMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTL 950
Query: 912 AKLAATAVDFPQTGRTVTMPQNLKPKVYPDFMGKEDFQSYKSDKILGQLYRKV------- 754
A+LAATAVDFP+TG+ V+MP LKPK+YPDFMGKE++QSYKS+KILG+LYR++
Sbjct: 951 AELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDED 1010
Query: 753 IYSDIQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGEDEVVT 574
+ + +L+ GD+PYD DLE+ G++ +I DAW++KCSYDGQLN L+ QYKV E+EVVT
Sbjct: 1011 VAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVT 1070
Query: 573 GHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTLDAKNTVYEQKAS 394
GHIWS+ KY+SRKQG+LK+RLKH+Y+SLK EF+ FE + + QL KN +YEQKAS
Sbjct: 1071 GHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKAS 1130
Query: 393 AWYQVTYDPKWAMKALGMREAEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKELDNQK 214
AWYQV Y P W K+L +++ + + +LSFAWI A+YL RIKIR T +D+ K
Sbjct: 1131 AWYQVVYHPHWVKKSLELQDPDG---AGTSVMLSFAWIAADYLARIKIRHRETGNVDSAK 1187
Query: 213 PINTLAHYLAKKM 175
P+N+LA YLA +M
Sbjct: 1188 PVNSLAKYLADRM 1200
Score = 102 bits (255), Expect(2) = e-125
Identities = 48/65 (73%), Positives = 53/65 (81%), Gaps = 5/65 (7%)
Frame = -1
Query: 1262 LHPGDICILEAVDAPGLHHLVDCLVFPQKGDRPQTDEASGS----DLYFVTWDENLVPPG 1095
LHPGD+ +LEAVD PGLHHL DCLVFPQKG+RP T+EASGS DLYFVTWDENL+PP
Sbjct: 826 LHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPS 885
Query: 1094 -NLWI 1083
WI
Sbjct: 886 KRSWI 890
>gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 373 bits (958), Expect(2) = e-125
Identities = 187/319 (58%), Positives = 236/319 (73%), Gaps = 7/319 (2%)
Frame = -3
Query: 1110 SCSSRKPMDYSPAEAKKLPRAVTNEDIIDFFVKNMVDEKLGTICNAHVVQADRSEQGAMD 931
S S PM Y+PAEAK+L R V + DIIDFF+KNMV E LG ICNAHVV AD SE GAMD
Sbjct: 882 SKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMD 941
Query: 930 KNCIRLAKLAATAVDFPQTGRTVTMPQNLKPKVYPDFMGKEDFQSYKSDKILGQLYRKVI 751
+ C++LA+LAA AVDFP+TG+ VTMP +LKPK+YPDFMGKE FQSY+S KILG+LYR+VI
Sbjct: 942 EKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVI 1001
Query: 750 -YSDIQLSSAAG------DLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNG 592
D + ++G D+PYD +LE+PG FI DAWN KCSYDGQLN L+GQYKVNG
Sbjct: 1002 DVYDAEGGESSGLEYVPKDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNG 1061
Query: 591 EDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTLDAKNTV 412
E+EVVTGHIWS+ KY+++KQG+LKERLKHAY+ L+ EF++ FE + D L +D KN +
Sbjct: 1062 EEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDM 1121
Query: 411 YEQKASAWYQVTYDPKWAMKALGMREAEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTK 232
YE+KA AWY+VTY P W ++L E + + +LSFAWI A+Y+ RIKIR G +
Sbjct: 1122 YERKAFAWYRVTYHPHWVTRSL---ELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQ 1178
Query: 231 ELDNQKPINTLAHYLAKKM 175
D+ KPI++L YL K+
Sbjct: 1179 NFDSTKPIDSLGRYLVNKI 1197
Score = 102 bits (255), Expect(2) = e-125
Identities = 47/59 (79%), Positives = 51/59 (86%), Gaps = 4/59 (6%)
Frame = -1
Query: 1262 LHPGDICILEAVDAPGLHHLVDCLVFPQKGDRPQTDEASGS----DLYFVTWDENLVPP 1098
LHPGD+ ILEAVD PGLHHL DCLVFPQKGDRP ++EASGS DLYFVTWDENL+PP
Sbjct: 823 LHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPP 881