BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010714
         (937 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   172   8e-41
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   172   8e-41
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab...   172   8e-41
emb|CBI25589.3| unnamed protein product [Vitis vinifera]              172   8e-41
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...   172   8e-41

>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Cucumis sativus]
           gi|449493675|ref|XP_004159406.1| PREDICTED: 116 kDa U5
           small nuclear ribonucleoprotein component-like [Cucumis
           sativus]
          Length = 988

 Score =  172 bits (437), Expect = 8e-41
 Identities = 90/105 (85%), Positives = 92/105 (87%), Gaps = 8/105 (7%)
 Frame = +1

Query: 1   TLPVVKTATEPLNPSELPN--------SKSYPLAITKVEESGEHTILGTGELYLDCIMKD 156
           TLPVVKTATEPLNPSELP         SKSYPLAITKVEESGEHTILGTGELYLD IMKD
Sbjct: 599 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD 658

Query: 157 LRELYSEVEVNVADLVISFCEMVVESSSMKCFAETPNKKNKITMV 291
           LRELYSEVEV VAD V+SFCE VVESSSMKCFAETPNKKNKITM+
Sbjct: 659 LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 703


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
           gi|30679607|ref|NP_849600.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
           gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
           to an U5 snRNP-specific protein 116 kD from Homo sapiens
           gi|4759280 and contains elongation factor G C-terminus
           PF|00679 and is a member of the elongation factor Tu
           family PF|00009 [Arabidopsis thaliana]
           gi|110741512|dbj|BAE98706.1| elongation factor like
           protein [Arabidopsis thaliana]
           gi|332189840|gb|AEE27961.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
           gi|332189841|gb|AEE27962.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  172 bits (437), Expect = 8e-41
 Identities = 90/105 (85%), Positives = 92/105 (87%), Gaps = 8/105 (7%)
 Frame = +1

Query: 1   TLPVVKTATEPLNPSELPN--------SKSYPLAITKVEESGEHTILGTGELYLDCIMKD 156
           TLPVVKTATEPLNPSELP         SKSYPLAITKVEESGEHTILGTGELYLD IMKD
Sbjct: 598 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD 657

Query: 157 LRELYSEVEVNVADLVISFCEMVVESSSMKCFAETPNKKNKITMV 291
           LRELYSEVEV VAD V+SFCE VVESSSMKCFAETPNKKNKITM+
Sbjct: 658 LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 702


>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
           lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
           ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
          Length = 987

 Score =  172 bits (437), Expect = 8e-41
 Identities = 90/105 (85%), Positives = 92/105 (87%), Gaps = 8/105 (7%)
 Frame = +1

Query: 1   TLPVVKTATEPLNPSELPN--------SKSYPLAITKVEESGEHTILGTGELYLDCIMKD 156
           TLPVVKTATEPLNPSELP         SKSYPLAITKVEESGEHTILGTGELYLD IMKD
Sbjct: 598 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD 657

Query: 157 LRELYSEVEVNVADLVISFCEMVVESSSMKCFAETPNKKNKITMV 291
           LRELYSEVEV VAD V+SFCE VVESSSMKCFAETPNKKNKITM+
Sbjct: 658 LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 702


>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  172 bits (437), Expect = 8e-41
 Identities = 90/105 (85%), Positives = 92/105 (87%), Gaps = 8/105 (7%)
 Frame = +1

Query: 1   TLPVVKTATEPLNPSELPN--------SKSYPLAITKVEESGEHTILGTGELYLDCIMKD 156
           TLPVVKTATEPLNPSELP         SKSYPLAITKVEESGEHTILGTGELYLD IMKD
Sbjct: 542 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD 601

Query: 157 LRELYSEVEVNVADLVISFCEMVVESSSMKCFAETPNKKNKITMV 291
           LRELYSEVEV VAD V+SFCE VVESSSMKCFAETPNKKNKITM+
Sbjct: 602 LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 646


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
           [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
           small nuclear ribonucleoprotein component, putative
           [Ricinus communis]
          Length = 992

 Score =  172 bits (437), Expect = 8e-41
 Identities = 90/105 (85%), Positives = 92/105 (87%), Gaps = 8/105 (7%)
 Frame = +1

Query: 1   TLPVVKTATEPLNPSELPN--------SKSYPLAITKVEESGEHTILGTGELYLDCIMKD 156
           TLPVVKTATEPLNPSELP         SKSYPLAITKVEESGEHTILGTGELYLD IMKD
Sbjct: 603 TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD 662

Query: 157 LRELYSEVEVNVADLVISFCEMVVESSSMKCFAETPNKKNKITMV 291
           LRELYSEVEV VAD V+SFCE VVESSSMKCFAETPNKKNKITM+
Sbjct: 663 LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 707