BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010706
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei...   119   3e-25
ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotei...   119   3e-25
ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa h...   119   3e-25
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei...   115   8e-25
emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]   115   8e-25

>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
           [Glycine max]
          Length = 2183

 Score =  119 bits (297), Expect = 3e-25
 Identities = 54/66 (81%), Positives = 58/66 (87%)
 Frame = +1

Query: 88  MAHLGGGEEAHARFKQYEYRANSSLVLPTDSRPCDTHEPTGEPESLWGKFNAKNMGDKVL 267
           MAHLGGG EAHARFKQYEYRANSSLVL TDSRP DTHEPTGEPESLWGK + K+ GD+  
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAY 60

Query: 268 KGRPPE 285
           +GRPPE
Sbjct: 61  RGRPPE 66


>ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
           [Glycine max]
          Length = 2183

 Score =  119 bits (297), Expect = 3e-25
 Identities = 54/66 (81%), Positives = 58/66 (87%)
 Frame = +1

Query: 88  MAHLGGGEEAHARFKQYEYRANSSLVLPTDSRPCDTHEPTGEPESLWGKFNAKNMGDKVL 267
           MAHLGGG EAHARFKQYEYRANSSLVL TDSRP DTHEPTGEPESLWGK + K+ GD+  
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAY 60

Query: 268 KGRPPE 285
           +GRPPE
Sbjct: 61  RGRPPE 66


>ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago
           truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear
           ribonucleoprotein 200 kDa helicase [Medicago truncatula]
          Length = 2223

 Score =  119 bits (297), Expect = 3e-25
 Identities = 55/66 (83%), Positives = 58/66 (87%)
 Frame = +1

Query: 88  MAHLGGGEEAHARFKQYEYRANSSLVLPTDSRPCDTHEPTGEPESLWGKFNAKNMGDKVL 267
           MAHLGGG EAHARFKQYEYRANSSLVL TDSRP DTHEPTGEPESLWG+ +AKN GD+V 
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDAKNFGDRVS 60

Query: 268 KGRPPE 285
             RPPE
Sbjct: 61  HDRPPE 66


>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase
           [Vitis vinifera]
          Length = 2177

 Score =  115 bits (288), Expect(2) = 8e-25
 Identities = 55/72 (76%), Positives = 60/72 (83%)
 Frame = +1

Query: 88  MAHLGGGEEAHARFKQYEYRANSSLVLPTDSRPCDTHEPTGEPESLWGKFNAKNMGDKVL 267
           MAHLGGG EAHARFKQYEYRANSSLVL TDSRP DTHEPTGEPESL+GK + K  GD+  
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAY 60

Query: 268 KGRPPERF*ELK 303
           +GRPPE   +LK
Sbjct: 61  RGRPPELDEKLK 72



 Score = 23.1 bits (48), Expect(2) = 8e-25
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 329 IDERLKKSKKNNKRD 373
           +DE+LKKSK+  +R+
Sbjct: 67  LDEKLKKSKRKKERE 81


>emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]
          Length = 2144

 Score =  115 bits (288), Expect(2) = 8e-25
 Identities = 55/72 (76%), Positives = 60/72 (83%)
 Frame = +1

Query: 88  MAHLGGGEEAHARFKQYEYRANSSLVLPTDSRPCDTHEPTGEPESLWGKFNAKNMGDKVL 267
           MAHLGGG EAHARFKQYEYRANSSLVL TDSRP DTHEPTGEPESL+GK + K  GD+  
Sbjct: 1   MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAY 60

Query: 268 KGRPPERF*ELK 303
           +GRPPE   +LK
Sbjct: 61  RGRPPELDEKLK 72



 Score = 23.1 bits (48), Expect(2) = 8e-25
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 329 IDERLKKSKKNNKRD 373
           +DE+LKKSK+  +R+
Sbjct: 67  LDEKLKKSKRKKERE 81