BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010701
         (2492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containi...   488   e-135
ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [S...   477   e-132
ref|XP_003566988.1| PREDICTED: pentatricopeptide repeat-containi...   476   e-131
ref|XP_002533784.1| pentatricopeptide repeat-containing protein,...   475   e-131
ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containi...   471   e-130

>ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Vitis vinifera]
          Length = 846

 Score =  488 bits (1257), Expect = e-135
 Identities = 244/377 (64%), Positives = 296/377 (78%), Gaps = 3/377 (0%)
 Frame = -1

Query: 1124 NDSVNSIRV-ESDSSYVNQINMRANGNVFDAEKLRSRSTNSYLRLDRDNTQTEDTR-KKV 951
            ND  NS  + E   S  +Q + +  G  F A+     S     R + +  Q +    +K+
Sbjct: 170  NDDENSSEIWEGKGSSKSQRDDKLKGRAFKADSSGLGSKGMRKRHEMNGAQVKKVGDEKI 229

Query: 950  SLKSGTLTRVHK-FDKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKW 774
             +K G   +  K F +   ++ +++ERAAFK+FE F D+  +  VS MEMEERIQ LAK 
Sbjct: 230  GIKKGNFNKSRKGFLEKGGDDILEIERAAFKNFEAFNDITVKKPVSKMEMEERIQKLAKL 289

Query: 773  LNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKS 594
            LNG DI+MPEW+FSKM+ SA+I+F+DHS+LRVIQILG LGNWRR LQ+++WLQ RERFKS
Sbjct: 290  LNGADIDMPEWMFSKMMRSAKIRFTDHSILRVIQILGKLGNWRRALQVLEWLQLRERFKS 349

Query: 593  YKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELF 414
            +K RYIYTAALDVLGKA+RPVEALNVF++M +  SSYPDL AY CIAVTLGQAGHMKELF
Sbjct: 350  HKLRYIYTAALDVLGKARRPVEALNVFYAMLQQMSSYPDLVAYHCIAVTLGQAGHMKELF 409

Query: 413  DVIDCMRSPPQHKFKTGLIEKWDPRLKPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQG 234
            DVIDCMRSPP+ KFKTG +EKWDPRL+PDI+VYNAVLNAC +RKQWEGAFWVLQQ+KQQ 
Sbjct: 410  DVIDCMRSPPRKKFKTGALEKWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQS 469

Query: 233  LQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEKITIPNSLNYKVLVNTLWKEGKADEAVL 54
             +PS TTYGL+MEVMF C KYNLV+EFF KV+K +IPN+L YKVLVNTLW+EGK DEAVL
Sbjct: 470  QKPSITTYGLVMEVMFVCGKYNLVHEFFWKVQKSSIPNALTYKVLVNTLWREGKTDEAVL 529

Query: 53   AVKDMERRGVVGSASLY 3
            AV+DME+RGVVGSA+LY
Sbjct: 530  AVQDMEKRGVVGSAALY 546


>ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [Sorghum bicolor]
            gi|241928097|gb|EES01242.1| hypothetical protein
            SORBIDRAFT_03g030920 [Sorghum bicolor]
          Length = 937

 Score =  477 bits (1227), Expect = e-132
 Identities = 290/635 (45%), Positives = 383/635 (60%), Gaps = 34/635 (5%)
 Frame = -1

Query: 1805 GRGSIEDSSGTSKIDFR---KRNNGVLKESNKFGWRRGSSEDGRAGSFQGSSRH---KLE 1644
            GRG +      S +  R    R  G + +S   G   G    G  G+     RH   +L 
Sbjct: 31   GRGFLVPERSLSMLPLRWGLSRKKGRVLDSRSDGAVAG----GGVGTGSSELRHIEKELT 86

Query: 1643 FGETNMDLSRERGLEEEKDEGSLTKTNRKWTNGVTSRFDVKHLTRKDHRFSGGYRNMNVV 1464
            F  T  D  +   +E  K + S    +   ++G +SR       R+ +R SG  RN    
Sbjct: 87   FSPTFTDYVKI--MESVKLDRS-KNIHGADSDGRSSRRRFTGDDRRTNRRSGDARNKPFE 143

Query: 1463 KRPGDDEDLHE-------VGLDQKRNRIDLQKKKLISNETRVTTQ---VRNVERAN---- 1326
            +  G   DL +        G   KR    ++  +    E     Q   +R   R N    
Sbjct: 144  RNQGPRRDLTKDENQKDVTGFVDKRAMGHVKNSRRGQGEVEDYVQRRMIRGDTRGNGGNG 203

Query: 1325 EFTRISKEAPERQQ-----SYRYSGSKV----SESSLNQTLT----DWEEFSQSSSEMKL 1185
            +F+   K    R+      +Y  SG+      S SS N  +     D+   S S +    
Sbjct: 204  QFSSPVKAKDTRKNLQGRATYTPSGTSTLPNSSISSKNAKVQMGKHDYTRTSSSINFKYP 263

Query: 1184 GEIGSSKVADVNVKDLYRRSNDSVNSIRVESDSSYVNQINMRANGNVFDAEKLRSRSTNS 1005
            GE  S+   +VN     +R+   V S+        + +I++ +  +        +++ + 
Sbjct: 264  GETFSN--TEVNANSNVQRNQQRVESLGRNFVVRRLGEIDIDSKKSTVSKTYRSTQAMSE 321

Query: 1004 YLRLDRDNTQTEDTRKKVSLKSGTLTRVHKF-DKDVDENDMDMERAAFKSFEVFTDVRGR 828
            +     DN ++++ R  V L  G   ++ KF  +D +  D D +RAAFK+FEVFTDVR R
Sbjct: 322  HDSHSSDNLESDEPRT-VQLHRGANVKMGKFIRRDAEATDFD-DRAAFKTFEVFTDVRNR 379

Query: 827  PRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQILGTLGNW 648
            PR+  MEMEERIQ LA  LN TD+N PEW FSKMIH A+IKFSDHS+LR++Q+LG  GNW
Sbjct: 380  PRILRMEMEERIQKLASRLNATDVNTPEWKFSKMIHDAKIKFSDHSILRIVQMLGRYGNW 439

Query: 647  RRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFSSYPDLAA 468
            + VLQ+++WLQSRERFKSYK+RYIYT  LDVLGKAKRP+EALNVF+SM+   SSYPD+AA
Sbjct: 440  KCVLQVVEWLQSRERFKSYKSRYIYTTVLDVLGKAKRPLEALNVFYSMQNQLSSYPDMAA 499

Query: 467  YRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLKPDIIVYNAVLNACAQ 288
            Y CIAVTLGQAG +KELFDVIDCMRSPP+ KFK   ++ WDPRL+PD+IVYNAVLNAC Q
Sbjct: 500  YHCIAVTLGQAGLVKELFDVIDCMRSPPRKKFKLSPLQNWDPRLEPDLIVYNAVLNACVQ 559

Query: 287  RKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEKITIPNSLNY 108
            +KQWEGAFWVLQQ+K++ ++P+++TYGL+MEVM  C KYNLVYEFF KVEK +IP +LNY
Sbjct: 560  QKQWEGAFWVLQQLKEKNIRPTNSTYGLVMEVMLVCGKYNLVYEFFNKVEKSSIPGALNY 619

Query: 107  KVLVNTLWKEGKADEAVLAVKDMERRGVVGSASLY 3
            KVLVN LW+EGK +EAV+AVKDME RG+VGSASLY
Sbjct: 620  KVLVNALWREGKINEAVMAVKDMESRGIVGSASLY 654


>ref|XP_003566988.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Brachypodium distachyon]
          Length = 976

 Score =  476 bits (1224), Expect = e-131
 Identities = 299/762 (39%), Positives = 406/762 (53%), Gaps = 19/762 (2%)
 Frame = -1

Query: 2231 VPLNPVSKIALSRKNVKENRVFCAVVANGLADSG----KFIEKQFEFKPTFDDYLKAMES 2064
            +P+ P++   + R  V +     A    G A +G    + IEK+  F PTF DY+K MES
Sbjct: 40   IPVLPLNWGLVRRGRVLDAGFGAASALAGEAGTGSSELRHIEKELTFSPTFTDYVKMMES 99

Query: 2063 VKTGRETKPVGKDVRRVSEAFEEGKERVESGSEGYSGRMGNRKR---EGSYEKSRTWIRP 1893
            VK                       +R +S   G S    +R+R   +G     R   R 
Sbjct: 100  VKL----------------------DRSKSSQGGDSDGRSSRRRFVGDGDASVGRRVDRE 137

Query: 1892 MGVDNSEVSFMEGNNGVTRDVEEGFSRKGGRGSIEDSSGTSKIDFRKRNNGVLKESNKFG 1713
            +G   ++                 F RK  RG+  D       + R  NN + K      
Sbjct: 138  LGDPRNQ----------------SFERK--RGAHRDRGSERGREERSANNDIAKNFTGLV 179

Query: 1712 WRRGSSEDGRAGSFQGSSRHKLEFGETNMDLSRERGLEEEKDEGSLTKTNRKWTNGVTSR 1533
             RR S++   +   QG                 E  ++     G  +KT     N    +
Sbjct: 180  ERRMSTDAENSSYRQGKV---------------EEYVQRRIVRGERSKTGDSTDNNGRRQ 224

Query: 1532 FDVKHLTRKDHRFSGGYRNMNVVKRPGDDEDLHEVGLDQKRNRIDLQKKKLISNETRVTT 1353
            F   ++  KD+R S                                              
Sbjct: 225  F-ASYVKTKDNRDS---------------------------------------------- 237

Query: 1352 QVRNVERANEFTRISKEAPERQQSYRYSGSKVSESSLNQTLTDWEEFSQSSSEMKLGEIG 1173
             V +    +  +   K+  ER  S       VS +S+ +      E  +S+     G+  
Sbjct: 238  MVESAGNRHAHSNARKDLQERATSI------VSRTSVTRDSNILLENPKSTLNEGKGDFT 291

Query: 1172 SSKVADVNVKDLYRRSNDSVNSIRVESDSSYVN-QINMRANGNVFDAEKLRSRSTNSYLR 996
            + ++ +++ +D        ++S +V SDS +   Q  + + G      + R   T     
Sbjct: 292  NRRIKNIHEQDFKYPRERKISSSKVNSDSKFQRYQHKVESAGRNLVVGRFRGSDTGYSKP 351

Query: 995  LDRDNTQTED-----------TRKKVSLKSGTLTRVHKFDKDVDENDMDMERAAFKSFEV 849
                 T +E+             + +  + G   ++ KF +   E  +D +RAAFK+FEV
Sbjct: 352  TVSMQTVSENYGHPRYGLEHGKPETIRTQKGENVQLGKFVRRDSEAVID-DRAAFKTFEV 410

Query: 848  FTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVIQI 669
            FTDVR RPRV  ME+EERIQ LA  LN TD+N PEW FSKMIH A+IKF+DHS+LR++QI
Sbjct: 411  FTDVRNRPRVLQMEIEERIQKLASQLNATDVNTPEWKFSKMIHDAQIKFTDHSILRIVQI 470

Query: 668  LGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREGFS 489
            LG  GNW+RVLQ+++WLQSRERFKSYK+RYIYT  LDVLGKAK+P EALNVF++M +  S
Sbjct: 471  LGRYGNWKRVLQVVEWLQSRERFKSYKSRYIYTTVLDVLGKAKKPFEALNVFYTMLDQMS 530

Query: 488  SYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLKPDIIVYNA 309
            SYPD+AAY CIAVTLGQAG +KELFDVIDCMRSPP+ KF  G ++ WDPRL+PD+IVYNA
Sbjct: 531  SYPDIAAYHCIAVTLGQAGLVKELFDVIDCMRSPPRKKFMAGPVQNWDPRLEPDLIVYNA 590

Query: 308  VLNACAQRKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEKIT 129
            VLNAC Q+KQWEG FWVLQQ+K++ ++P++TTYGL+MEVM  C KYNLVYEFF +V++ +
Sbjct: 591  VLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFDRVKQKS 650

Query: 128  IPNSLNYKVLVNTLWKEGKADEAVLAVKDMERRGVVGSASLY 3
            IP +LNYKVLVN LW+EGK DEAV+AVKDME+RG+VGSASLY
Sbjct: 651  IPGALNYKVLVNALWREGKIDEAVMAVKDMEKRGIVGSASLY 692


>ref|XP_002533784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223526285|gb|EEF28597.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 856

 Score =  475 bits (1222), Expect = e-131
 Identities = 232/344 (67%), Positives = 284/344 (82%), Gaps = 1/344 (0%)
 Frame = -1

Query: 1031 KLRSRSTNSYLRLDRDNTQTEDTRKKVSLKSGTLTRVHKFDKDVD-ENDMDMERAAFKSF 855
            K+  R   +Y+++D++      T K+   K G + R ++   D   E+D ++ERAAFKS 
Sbjct: 226  KMGGRLVRNYVQIDKN------TDKEFMEKKGLIRRTNQAFLDYGHEDDSEVERAAFKSL 279

Query: 854  EVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEWLFSKMIHSARIKFSDHSVLRVI 675
            E + +  GRP+ S  E+E+R+Q LAK LNG DI+MPEW+FSKM+ SARIK++DHSVLR+I
Sbjct: 280  EEYNNFTGRPQNSKREVEDRLQKLAKCLNGADIDMPEWMFSKMMRSARIKYTDHSVLRII 339

Query: 674  QILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAALDVLGKAKRPVEALNVFHSMREG 495
            QILG LGNWRRVLQ+I+WLQ RERFKS++ R IYT AL+VLGKA+RPVEALNVFH M++ 
Sbjct: 340  QILGKLGNWRRVLQVIEWLQMRERFKSHRLRNIYTTALNVLGKAQRPVEALNVFHVMQQQ 399

Query: 494  FSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQHKFKTGLIEKWDPRLKPDIIVY 315
             SSYPDL AY CIAVTLGQAGHM++LFDVID MRSPP+ KFK   + KWDPRL+PDI+VY
Sbjct: 400  MSSYPDLVAYHCIAVTLGQAGHMEQLFDVIDSMRSPPKKKFKMAAVHKWDPRLEPDIVVY 459

Query: 314  NAVLNACAQRKQWEGAFWVLQQIKQQGLQPSSTTYGLIMEVMFACEKYNLVYEFFKKVEK 135
            NAVLNAC QRKQWEGAFWVLQQ+KQQGLQPS+TTYGLIMEVMFAC KYNLV+EFF+KV+K
Sbjct: 460  NAVLNACVQRKQWEGAFWVLQQLKQQGLQPSTTTYGLIMEVMFACGKYNLVHEFFRKVQK 519

Query: 134  ITIPNSLNYKVLVNTLWKEGKADEAVLAVKDMERRGVVGSASLY 3
             +IPN+L YKVLVNTLW+EGK DEAVLAV++MERRG+VG A+LY
Sbjct: 520  SSIPNALVYKVLVNTLWREGKTDEAVLAVEEMERRGIVGFAALY 563


>ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
            chloroplastic-like [Cucumis sativus]
          Length = 902

 Score =  471 bits (1213), Expect = e-130
 Identities = 256/486 (52%), Positives = 345/486 (70%), Gaps = 25/486 (5%)
 Frame = -1

Query: 1385 KLISNETRVTTQVRNVERANEFTRISKE---------APERQQS-YRYSGSKVSESSLNQ 1236
            K+ + + +VT    NV+  N F R+ K+         APE+  S  ++   KV   S ++
Sbjct: 134  KIDNGKNKVTDVQHNVDVKNMFKRVDKKDLFNNTERIAPEKDLSGNKFDRRKVVTRSNDK 193

Query: 1235 TLTDWEEF----SQSSSEMKLGEIGSSKVAD-VNVKDLYRRSNDSVNSIRVESDSSYVNQ 1071
                   F    +    E K  E  SS +   V   +  +  +   N++ V+ +SS V+ 
Sbjct: 194  VKGKMTPFGSLVNDKQHEEKRNENWSSYIEPRVTRSNSKKPIHFKANTLEVKKESSRVSD 253

Query: 1070 IN-MRANGNVF-----DAEKLRS--RSTNSYLRLDRDNTQTEDTRKKVSLKS--GTLTRV 921
             N M+ +  ++     DA+  +   ++    ++L+R     +   +K + +S  GT T  
Sbjct: 254  GNSMKTSEKIWAWGDDDAKPAKGVLKAGKYGIQLERSYNPGDKVGRKKTEQSYRGTSTSG 313

Query: 920  HKFDKDVDENDMDMERAAFKSFEVFTDVRGRPRVSWMEMEERIQNLAKWLNGTDINMPEW 741
             +F +  ++N +++E AAF +F+ F D+  +PRVS MEMEERIQ L+K LNG DI+MPEW
Sbjct: 314  KRFLEFNEKNSLEVEHAAFNNFDAF-DIMDKPRVSKMEMEERIQMLSKRLNGADIDMPEW 372

Query: 740  LFSKMIHSARIKFSDHSVLRVIQILGTLGNWRRVLQIIQWLQSRERFKSYKTRYIYTAAL 561
            +FS+M+ SA+I++SDHS+LRVIQ+LG LGNWRRVLQII+WLQ RERFKS+K R+IYT AL
Sbjct: 373  MFSQMMRSAKIRYSDHSILRVIQVLGKLGNWRRVLQIIEWLQMRERFKSHKLRFIYTTAL 432

Query: 560  DVLGKAKRPVEALNVFHSMREGFSSYPDLAAYRCIAVTLGQAGHMKELFDVIDCMRSPPQ 381
            DVLGKA+RPVEALNVFH+M+E FSSYPDL AY  IAVTLGQAG+M+ELFDVID MRSPP+
Sbjct: 433  DVLGKARRPVEALNVFHAMQEHFSSYPDLVAYHSIAVTLGQAGYMRELFDVIDSMRSPPK 492

Query: 380  HKFKTGLIEKWDPRLKPDIIVYNAVLNACAQRKQWEGAFWVLQQIKQQGLQPSSTTYGLI 201
             KFKTG++EKWDPRL+PDI++YNAVLNAC +RK  EGAFWVLQ++K+Q LQPS++TYGL+
Sbjct: 493  KKFKTGVLEKWDPRLQPDIVIYNAVLNACVKRKNLEGAFWVLQELKKQSLQPSTSTYGLV 552

Query: 200  MEVMFACEKYNLVYEFFKKVEKITIPNSLNYKVLVNTLWKEGKADEAVLAVKDMERRGVV 21
            MEVM  C KYNLV+EFF+KV+K +IPN+L YKVLVNTLWKEGK DEAVLA+++ME RG+V
Sbjct: 553  MEVMLECGKYNLVHEFFRKVQKSSIPNALTYKVLVNTLWKEGKTDEAVLAIENMEIRGIV 612

Query: 20   GSASLY 3
            GSA+LY
Sbjct: 613  GSAALY 618