BLASTX nr result
ID: Coptis23_contig00010698
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010698
(1902 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vi... 485 e-134
emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera] 482 e-133
ref|XP_002322279.1| chromatin remodeling complex subunit [Populu... 422 e-115
ref|XP_002511138.1| DNA binding protein, putative [Ricinus commu... 401 e-109
ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago tr... 400 e-109
>ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera]
gi|297734457|emb|CBI15704.3| unnamed protein product
[Vitis vinifera]
Length = 563
Score = 485 bits (1249), Expect = e-134
Identities = 283/561 (50%), Positives = 358/561 (63%), Gaps = 9/561 (1%)
Frame = -2
Query: 1835 MEVTEDGNSKSHFPAYEPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKI 1656
ME T D +SK EP+ +LYTIP S WF+WD+I E E+ SLKEFF+ SSIS+TPKI
Sbjct: 1 MESTPDPSSKLTRHD-EPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKI 59
Query: 1655 YKEYRDFIINKYREDPKRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGD 1476
YKEYRDFII+KYREDP RRL F EIRKSL+GDVSL++KV+ FLE+WGLINFG G D
Sbjct: 60 YKEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGA--PGGED 117
Query: 1475 SWSVDEESDK-KVVFEEGAPNGVRVVAFPNSSRPVVR----SGNGEGVVESGLRLPPLAS 1311
S +V E +++ +V E+GAPNG+RVVA PNS +P+ NGE V E+G RLPPLAS
Sbjct: 118 SAAVAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGE-VDENGFRLPPLAS 176
Query: 1310 CNDVFGG--GLKGLSCVKCGEVFASKSGEAN-KKENVVTCLKCLKNGNIEESKSENDVNF 1140
+DVF KGL C CG+ SG N K + V C+KC KNGN E++S +D F
Sbjct: 177 YSDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKF 234
Query: 1139 KDSKDGSDNCEADSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGE 960
D + N A WTE E HGDDW+LV ++V+TK + DCISKLI+LPFGE
Sbjct: 235 NDCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGE 293
Query: 959 LMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGETEEP 780
LML ++ GK N+S+I Q T +E Q+ IK Q++ES+QNGD E + P
Sbjct: 294 LMLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNGDAENQGP 350
Query: 779 PLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGD 600
PLKR+CI L+DA SLM+QVA +ST+V PH+ ALC+ENP + F+ D
Sbjct: 351 PLKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAED 410
Query: 599 DITNVLDSPTSSSKATSLLNVEDSEM-ERHAQSESQVGDAEKNPIALTLRXXXXXXXXXX 423
++T L SP ++K L VEDSE+ ER SE Q +EKN I L L+
Sbjct: 411 NVTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIATALG 470
Query: 422 XXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESX 243
ADQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT ++ELKES
Sbjct: 471 AAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESI 530
Query: 242 XXXXXXXXXXVFSAGIARWRD 180
VF+AGI+RWRD
Sbjct: 531 IAERIDILQRVFNAGISRWRD 551
>emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]
Length = 563
Score = 482 bits (1240), Expect = e-133
Identities = 282/561 (50%), Positives = 356/561 (63%), Gaps = 9/561 (1%)
Frame = -2
Query: 1835 MEVTEDGNSKSHFPAYEPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKI 1656
ME T D +SK EP+ +LYTIP S WF+WD+I E E+ SLKEFF+ SSIS+TPKI
Sbjct: 1 MESTPDPSSKLTRHD-EPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKI 59
Query: 1655 YKEYRDFIINKYREDPKRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGD 1476
YKEYRDFII+KYREDP RRL F EIRKSL+GDVSL++KV+ FLE+WGLINFG G D
Sbjct: 60 YKEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGA--PGGED 117
Query: 1475 SWSVDEESDK-KVVFEEGAPNGVRVVAFPNSSRPVVR----SGNGEGVVESGLRLPPLAS 1311
S +V E +++ +V E+GAPNG+RVVA PNS +P+ NGE V E+G RLPPLAS
Sbjct: 118 SAAVAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGE-VDENGFRLPPLAS 176
Query: 1310 CNDVFGG--GLKGLSCVKCGEVFASKSGEAN-KKENVVTCLKCLKNGNIEESKSENDVNF 1140
+DVF KGL C CG+ SG N K + V C+KC KNGN E++S +D F
Sbjct: 177 YSDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKF 234
Query: 1139 KDSKDGSDNCEADSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGE 960
D + N A WTE E HGDDW+LV ++V+TK + DCISKLI+LPFGE
Sbjct: 235 NDCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGE 293
Query: 959 LMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGETEEP 780
LML ++ GK N+S+I Q T +E Q+ IK Q++ES+QNGD E + P
Sbjct: 294 LMLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNGDAENQGP 350
Query: 779 PLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGD 600
PLKR+CI L+DA SLM QVA +ST+V PH+ ALC+ENP + F+ D
Sbjct: 351 PLKRKCITSLSDAGISLMXQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAED 410
Query: 599 DITNVLDSPTSSSKATSLLNVEDSEM-ERHAQSESQVGDAEKNPIALTLRXXXXXXXXXX 423
++T L SP ++ L VEDSE+ ER SE Q +EKN I L L+
Sbjct: 411 NVTEELGSPIRNNXLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIATALG 470
Query: 422 XXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESX 243
ADQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT ++ELKES
Sbjct: 471 AAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESI 530
Query: 242 XXXXXXXXXXVFSAGIARWRD 180
VF+AGI+RWRD
Sbjct: 531 IAERIDILQRVFNAGISRWRD 551
>ref|XP_002322279.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222869275|gb|EEF06406.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 570
Score = 422 bits (1085), Expect = e-115
Identities = 251/555 (45%), Positives = 340/555 (61%), Gaps = 13/555 (2%)
Frame = -2
Query: 1787 EPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKIYKEYRDFIINKYREDP 1608
EP+ +LYTIPS S WF+W DI ETER +L+EFF+ SSI++TPKIYKEYRDFIINKYREDP
Sbjct: 18 EPELDLYTIPSYSSWFSWHDIHETERVALREFFDGSSITRTPKIYKEYRDFIINKYREDP 77
Query: 1607 KRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVV--EKVGGDSWSVDEESDKKVVF 1434
RRL FTEIRKSL+GDVSL+ KV+ FL WGLINF E++G S +VD V
Sbjct: 78 SRRLTFTEIRKSLVGDVSLLNKVFLFLNNWGLINFSCEKNEEIGLGSGNVD------VRV 131
Query: 1433 EEGAPNGVRVVAFPNSSRPV----VRS---GNGEGVVESGLRLPPLASCNDVFG---GGL 1284
E+GAPNGVR+V P+ +P+ V+S G+G G +GL+LPPLAS +DVFG G
Sbjct: 132 EDGAPNGVRIVEMPDKLKPISVGSVQSSAEGSGGGGSGTGLKLPPLASYSDVFGELVGKK 191
Query: 1283 KGLSCVKCGEVFASKSGEANKKENVVTCLKCLKNGNIEESKSENDVNFKDSKDGSDNCEA 1104
K + C CG S E +K + ++ C KC +G E+KS++D K S + ++ A
Sbjct: 192 KEVVCGNCGGSCDSGQYEHSKGDYLI-CQKCFNDGTYGENKSKDDFKLKVSAE-NNGSNA 249
Query: 1103 DSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGELMLNTTNGKGDG 924
WTE E HG+DWDLVA++VKTK + DCISKLI+LPFG+L+L++T GKG+
Sbjct: 250 AVWTEEETLRLLESVSRHGNDWDLVAQNVKTKTKLDCISKLIELPFGDLILSSTYGKGNS 309
Query: 923 RKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGETEEPPLKRRCIDRLAD 744
ST N Q + E QD K +D H Q++ +++ GD + P LKRR I ++D
Sbjct: 310 SGQIGSTNNSKQVPAAPSEHQDDTKHEDQLHEQMNANEEKGDVMDDGPLLKRRRITSVSD 369
Query: 743 ASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDDITNVLDSPTSS 564
A SLMKQVA +ST+V P + ALC+E R F+ D +N SP+
Sbjct: 370 AGGSLMKQVALISTMVGPDITAAAAEAAVAALCDETACPREIFDGEEDFPSNGFSSPSFH 429
Query: 563 SKATSLLNVEDSEMER-HAQSESQVGDAEKNPIALTLRXXXXXXXXXXXXXXXXXXXADQ 387
SK+ + V+ SE+++ QS ++ A +N I L+LR ADQ
Sbjct: 430 SKSKRVDEVDASEVKQTPTQSVNEEASAWQNDIPLSLRLRAAVATTLGAAAAHAKLLADQ 489
Query: 386 EDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXXXXXXXXXXXVF 207
EDRE+E+L+AT++ETQL+K+ KIKHF++L+LIME EY ++ EL ES
Sbjct: 490 EDREVENLMATIVETQLKKLHHKIKHFDDLELIMEKEYAELDELTESLTEERIDVLQRAI 549
Query: 206 SAGIARWRDNHSSVK 162
AGI++ RD H+ +K
Sbjct: 550 RAGISKSRD-HAPIK 563
>ref|XP_002511138.1| DNA binding protein, putative [Ricinus communis]
gi|223550253|gb|EEF51740.1| DNA binding protein, putative
[Ricinus communis]
Length = 547
Score = 401 bits (1030), Expect = e-109
Identities = 241/544 (44%), Positives = 317/544 (58%), Gaps = 2/544 (0%)
Frame = -2
Query: 1787 EPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKIYKEYRDFIINKYREDP 1608
EP+ +LYTIPS S WF WD+I ETER +LKEFF+ SSI++TPKIYKEYRDFIINKYREDP
Sbjct: 13 EPEFDLYTIPSYSSWFAWDNIHETERAALKEFFDGSSITRTPKIYKEYRDFIINKYREDP 72
Query: 1607 KRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGDSWSVDEESDKKVVFEE 1428
RRL FTEIRKSL+GDV+L+ KV+ FL+ GLINFG DS + E E+
Sbjct: 73 SRRLTFTEIRKSLVGDVTLLNKVFRFLDNSGLINFGADSAPYNDS---EREEIGNFRVED 129
Query: 1427 GAPNGVRVVAFPNSSRPVVRSGNGEGVVESGLRLPPLASCNDVFGGGLKGLSCVKCGEVF 1248
G PNG+RVVA PNS +P+ +VE+ LRLPPL S +DVFG + G C CGE
Sbjct: 130 GPPNGIRVVAMPNSLKPLSVPPQNAEIVENVLRLPPLTSHSDVFGKQI-GFVCGNCGETC 188
Query: 1247 ASKSGEANKKENVVTCLKCLKNGNIEESKSENDVNFKDSKDGSDNCEADSWTETEIXXXX 1068
S E +K E ++ C C NG+ ++ S++D F DS D S W+E E
Sbjct: 189 NSGRYECSKGEYIL-CTNCFNNGDYGQNNSKDDYKFNDSVDHS---SGTVWSEAETILLL 244
Query: 1067 XXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGELMLNTTNGKGDGRKSNSSTINIAQ 888
HGD+WDLV RDV+TK + +CI+KLI+LPF L+L++T GD + S +
Sbjct: 245 ESVLKHGDNWDLVVRDVQTKSKLECIAKLIELPFRNLLLSSTL-VGDTSGLSGSADYLKP 303
Query: 887 GQSTQIELQDLIKE-KDLCHYQVSESDQNGDGETEEPPLKRRCIDRLADASDSLMKQVAH 711
+ E QD + + L + S+QNGD E PLKR+ I L+DA LMKQVA
Sbjct: 304 VPVSSSEKQDAVDNIEGLLPESQNVSEQNGDAADEGSPLKRKRIVSLSDAGSCLMKQVAL 363
Query: 710 LSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDDITNVLDSPTSSSKATSLLNVED 531
+ST+ P V ALC+E R F D L SPT S+ +L V+D
Sbjct: 364 ISTMAGPDVASAAAKAAIGALCDETSCPREIFGGKEDFPAKGLWSPTLCSRPERVLYVKD 423
Query: 530 SEM-ERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXXXXXXXXXXADQEDREIEHLVAT 354
+E+ ER Q E++ +N I LTLR AD+ED++IE LV T
Sbjct: 424 TEIKERSTQLETEDTSLGQNDIPLTLRLRTAVATSLGAAAAHAKLLADEEDQKIEKLVTT 483
Query: 353 VIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXXXXXXXXXXXVFSAGIARWRDNH 174
V+E QL+K+Q KIKHF+ L+LIME EY +++EL+ES AG+++WRD H
Sbjct: 484 VVEAQLKKLQYKIKHFDNLELIMEKEYAELEELQESLIEERMDVVQRAIMAGLSKWRD-H 542
Query: 173 SSVK 162
S+ +
Sbjct: 543 SAAR 546
>ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula]
gi|355491835|gb|AES73038.1| SWI/SNF complex subunit
SMARCC2 [Medicago truncatula]
Length = 540
Score = 400 bits (1029), Expect = e-109
Identities = 241/551 (43%), Positives = 323/551 (58%), Gaps = 13/551 (2%)
Frame = -2
Query: 1796 PAYEPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKIYKEYRDFIINKYR 1617
P + + ELYTIPSSS WF WD+I ETE+ + KE+F+ +SI++TPKIYKEYRDFIINKYR
Sbjct: 7 PISDSELELYTIPSSSKWFAWDEIHETEKTAFKEYFDGTSITRTPKIYKEYRDFIINKYR 66
Query: 1616 EDPKRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGDSWSVDEESDK--- 1446
E+P RRL FTE+RKSL+GDV+ + KV+ FLE WGLIN+G G+ ++E +K
Sbjct: 67 EEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPS--AGNDGEAEKEHEKERC 124
Query: 1445 KVVFEEGAPNGVRVVAFPNSSRPV-------VRSGNGEGVVESGLRLPPLASCNDVFGGG 1287
K+ EEGAPNG+RVVA PNS +P+ + +G G+ +G+++ PLAS +DV+G
Sbjct: 125 KLKVEEGAPNGIRVVATPNSLKPISLPRDTKIAAGGGD-ESGAGVKIAPLASYSDVYGDL 183
Query: 1286 L--KGLSCVKCGEVFASKSGEANKKENVVTCLKCLKNGNIEESKSENDVNFKDSKDGSDN 1113
+ K ++C CG+ S + K+N + C KC KNGN E +S D +S + S N
Sbjct: 184 IRRKEVNCGNCGDKCGS-GHYRSTKDNFIICTKCFKNGNYGEKRSMEDFKLNESSEISAN 242
Query: 1112 CEADSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGELMLNTTNGK 933
A WTE E HGDDW+LVA+ V+TK + +CISKLI+LPFGELML +
Sbjct: 243 HSA-VWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELPFGELMLASVRRN 301
Query: 932 GDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNGDGETEEPPLKRRCIDR 753
+ N Q Q + + Q+ +D +E +QNGD E P KRR +
Sbjct: 302 DNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNGDAVNENPS-KRRRVST 360
Query: 752 LADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDDITNVLDSP 573
L+D+S SLMKQV LSTVV PHV ALC+EN R F DV +D
Sbjct: 361 LSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIF-DVEED-------- 411
Query: 572 TSSSKATSLLNVEDSEM-ERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXXXXXXXXXX 396
+S++A L E EM E QSE K+ I LTLR
Sbjct: 412 NASARA---LEAEGLEMVEGSTQSE------VKDDIPLTLRIRAAIGTALGATAARAKLL 462
Query: 395 ADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXXXXXXXXXX 216
ADQEDREIEHLVAT+IE Q+ K+Q K+KHF+EL+L+ME E+ +++ELK+S
Sbjct: 463 ADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSILTERIDVLR 522
Query: 215 XVFSAGIARWR 183
F +G+ARW+
Sbjct: 523 KTFKSGVARWK 533