BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010697
         (1087 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, put...   371   e-100
ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleop...   359   6e-97
ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory pr...   357   3e-96
ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleop...   354   2e-95
emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]   350   5e-94

>ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus communis]
            gi|223539109|gb|EEF40705.1| heterogeneous nuclear
            ribonucleoprotein, putative [Ricinus communis]
          Length = 264

 Score =  371 bits (952), Expect = e-100
 Identities = 191/264 (72%), Positives = 208/264 (78%), Gaps = 3/264 (1%)
 Frame = -1

Query: 1036 MYGSR-AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNRA-FPVI 863
            MYGSR AMLGSGG SDGYEVGSKR RM+ES+PYFAV+GG+S +QPY Y GG   A FPV+
Sbjct: 1    MYGSRGAMLGSGGVSDGYEVGSKRPRMMESNPYFAVSGGSSGFQPYGYGGGFQSAPFPVV 60

Query: 862  RLRGLPFNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSM 683
            RLRGLPFNCTDIDIFKFF GLDIVDVLL NKNGRFTGEAFVVF  ++Q EFALQRD Q+M
Sbjct: 61   RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNM 120

Query: 682  GRRYVEVFRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXSVDKDQLEYTEFLKLR 506
            GRRYVEVFRC +QDYY AVAAEV YEGIYD +Y             DKDQLEYTE LK+R
Sbjct: 121  GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKDQLEYTEILKMR 180

Query: 505  GLPYSVTKSDIVEFFDEFELAEDSVHIACRLDGKATGEAYVEFGSVXXXXXXXXXXXMTI 326
            GLP+S  K +I+EFF EFEL ED +HIACR DGKATGEAYVEF S            MTI
Sbjct: 181  GLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEAKRAMSKDKMTI 240

Query: 325  GSRYVELFTSTSDEARRAKSRSRQ 254
            GSRYVELF ST DEARRA+SRSRQ
Sbjct: 241  GSRYVELFPSTPDEARRAESRSRQ 264


>ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
            sativus]
          Length = 263

 Score =  359 bits (922), Expect = 6e-97
 Identities = 188/263 (71%), Positives = 204/263 (77%), Gaps = 2/263 (0%)
 Frame = -1

Query: 1036 MYGSR-AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSY-SGGLNRAFPVI 863
            MYG R AMLGSGG SDGYEVGSKRQRM+E +PYFAV+  T+ +QPY Y S     AFPV+
Sbjct: 1    MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60

Query: 862  RLRGLPFNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSM 683
            RLRGLPFNCTDIDIFKFF GLDIVDVLL NKNGRF GEAFVVF  SVQ EFALQRD Q+M
Sbjct: 61   RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120

Query: 682  GRRYVEVFRCNKQDYYRAVAAEVKYEGIYDEYXXXXXXXXXXXSVDKDQLEYTEFLKLRG 503
            GRRYVEVFRC +QDYY AVAAEV YEGIYD               DKDQ+EYTE LKLRG
Sbjct: 121  GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180

Query: 502  LPYSVTKSDIVEFFDEFELAEDSVHIACRLDGKATGEAYVEFGSVXXXXXXXXXXXMTIG 323
            LP+SVTKS+I+EFF EF+LAED +HIA R DGKATGEAYVEF S            MTIG
Sbjct: 181  LPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIG 240

Query: 322  SRYVELFTSTSDEARRAKSRSRQ 254
            SRYVELF ST +EARRA+SRSRQ
Sbjct: 241  SRYVELFPSTPNEARRAESRSRQ 263


>ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
            vinifera]
          Length = 264

 Score =  357 bits (916), Expect = 3e-96
 Identities = 183/264 (69%), Positives = 206/264 (78%), Gaps = 3/264 (1%)
 Frame = -1

Query: 1036 MYGSR-AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNR-AFPVI 863
            MYGSR AMLGSGG SDGYE+GSKRQRM+ES+PYFAV+   S +QPY Y  G     FPV+
Sbjct: 1    MYGSRGAMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVV 60

Query: 862  RLRGLPFNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSM 683
            RLRGLPFNCTDIDIFKFF GLDIVDVLL NK+GRF+GEA+VVF  S+Q++FALQRD Q+M
Sbjct: 61   RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNM 120

Query: 682  GRRYVEVFRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXSVDKDQLEYTEFLKLR 506
            GRRYVEVFRC KQDYY AVA+EV YEGIYD ++             DKDQ+E+TE LKLR
Sbjct: 121  GRRYVEVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLR 180

Query: 505  GLPYSVTKSDIVEFFDEFELAEDSVHIACRLDGKATGEAYVEFGSVXXXXXXXXXXXMTI 326
            GLP+SV KS I+EFF +FEL +D VHIACR DGKATGEAYVEF S            MTI
Sbjct: 181  GLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTI 240

Query: 325  GSRYVELFTSTSDEARRAKSRSRQ 254
            GSRYVELF ST DEARRA+SRSRQ
Sbjct: 241  GSRYVELFPSTPDEARRAESRSRQ 264


>ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
            sativus]
          Length = 256

 Score =  354 bits (908), Expect = 2e-95
 Identities = 183/256 (71%), Positives = 199/256 (77%), Gaps = 1/256 (0%)
 Frame = -1

Query: 1018 MLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSY-SGGLNRAFPVIRLRGLPF 842
            MLGSGG SDGYEVGSKRQRM+E +PYFAV+  T+ +QPY Y S     AFPV+RLRGLPF
Sbjct: 1    MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60

Query: 841  NCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVEV 662
            NCTDIDIFKFF GLDIVDVLL NKNGRF GEAFVVF  SVQ EFALQRD Q+MGRRYVEV
Sbjct: 61   NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120

Query: 661  FRCNKQDYYRAVAAEVKYEGIYDEYXXXXXXXXXXXSVDKDQLEYTEFLKLRGLPYSVTK 482
            FRC +QDYY AVAAEV YEGIYD               DKDQ+EYTE LKLRGLP+SVTK
Sbjct: 121  FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180

Query: 481  SDIVEFFDEFELAEDSVHIACRLDGKATGEAYVEFGSVXXXXXXXXXXXMTIGSRYVELF 302
            S+I+EFF EF+LAED +HIA R DGKATGEAYVEF S            MTIGSRYVELF
Sbjct: 181  SNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240

Query: 301  TSTSDEARRAKSRSRQ 254
             ST +EARRA+SRSRQ
Sbjct: 241  PSTPNEARRAESRSRQ 256


>emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
          Length = 257

 Score =  350 bits (897), Expect = 5e-94
 Identities = 177/257 (68%), Positives = 200/257 (77%), Gaps = 2/257 (0%)
 Frame = -1

Query: 1018 MLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNR-AFPVIRLRGLPF 842
            MLGSGG SDGYE+GSKRQRM+ES+PYFAV+   S +QPY Y  G     FPV+RLRGLPF
Sbjct: 1    MLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVVRLRGLPF 60

Query: 841  NCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVEV 662
            NCTDIDIFKFF GLDIVDVLL NK+GRF+GEA+VVF  S+Q++FALQRD Q+MGRRYVEV
Sbjct: 61   NCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEV 120

Query: 661  FRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXSVDKDQLEYTEFLKLRGLPYSVT 485
            FRC KQDYY AVA+EV YEGIYD ++             DKDQ+E+TE LKLRGLP+SV 
Sbjct: 121  FRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVK 180

Query: 484  KSDIVEFFDEFELAEDSVHIACRLDGKATGEAYVEFGSVXXXXXXXXXXXMTIGSRYVEL 305
            KS I+EFF +FEL +D VHIACR DGKATGEAYVEF S            MTIGSRYVEL
Sbjct: 181  KSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVEL 240

Query: 304  FTSTSDEARRAKSRSRQ 254
            F ST DEARRA+SRSRQ
Sbjct: 241  FPSTPDEARRAESRSRQ 257