BLASTX nr result
ID: Coptis23_contig00010671
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010671
(440 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24668.3| unnamed protein product [Vitis vinifera] 83 1e-24
ref|XP_002273791.1| PREDICTED: uncharacterized protein C3B8.09-l... 83 1e-24
ref|XP_002530574.1| something about silencing protein sas10, put... 76 2e-21
ref|XP_003520178.1| PREDICTED: uncharacterized protein LOC100812... 62 2e-15
ref|NP_850397.1| Sas10/U3 ribonucleoprotein-like protein [Arabid... 57 5e-15
>emb|CBI24668.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 83.2 bits (204), Expect(2) = 1e-24
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 24/138 (17%)
Frame = +3
Query: 99 PSELEEIINEDHGTESGAKLIEEIVALASEPVS----LSDSHSSLPVKRSKESM------ 248
P++LEE +++ HG E+ L+ E LAS+ + L+ + K++ +S+
Sbjct: 382 PADLEEFLDKSHGAETKEMLVREAAKLASDSFAKEHELAQKQEIVMHKKAAKSVDEMRES 441
Query: 249 -----------VGSQSMEMLEVRASLEEKLKQKGIFSSVTNKLDINQKL---HSRRLETL 386
VG Q MEML+VRA+LE+KLKQKG+FSS+T K D QK +R+LETL
Sbjct: 442 KEGKSKRQNDQVGLQRMEMLKVRAALEDKLKQKGVFSSITPKPDRAQKRLQPVNRQLETL 501
Query: 387 DDFGDEVMDKDSGNANLS 440
DDF D+ MD + L+
Sbjct: 502 DDFDDDAMDVEGRTGGLT 519
Score = 55.1 bits (131), Expect(2) = 1e-24
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +1
Query: 1 KSEGHSVCDHPVIARLVEIKNLLDKMKQFDDNFLQNLK 114
KSEG V DHPVIARLVEIK+LLDKMKQ D+N +L+
Sbjct: 349 KSEGQPVRDHPVIARLVEIKSLLDKMKQLDENLPADLE 386
>ref|XP_002273791.1| PREDICTED: uncharacterized protein C3B8.09-like [Vitis vinifera]
Length = 669
Score = 83.2 bits (204), Expect(2) = 1e-24
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 24/138 (17%)
Frame = +3
Query: 99 PSELEEIINEDHGTESGAKLIEEIVALASEPVS----LSDSHSSLPVKRSKESM------ 248
P++LEE +++ HG E+ L+ E LAS+ + L+ + K++ +S+
Sbjct: 332 PADLEEFLDKSHGAETKEMLVREAAKLASDSFAKEHELAQKQEIVMHKKAAKSVDEMRES 391
Query: 249 -----------VGSQSMEMLEVRASLEEKLKQKGIFSSVTNKLDINQKL---HSRRLETL 386
VG Q MEML+VRA+LE+KLKQKG+FSS+T K D QK +R+LETL
Sbjct: 392 KEGKSKRQNDQVGLQRMEMLKVRAALEDKLKQKGVFSSITPKPDRAQKRLQPVNRQLETL 451
Query: 387 DDFGDEVMDKDSGNANLS 440
DDF D+ MD + L+
Sbjct: 452 DDFDDDAMDVEGRTGGLT 469
Score = 55.1 bits (131), Expect(2) = 1e-24
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +1
Query: 1 KSEGHSVCDHPVIARLVEIKNLLDKMKQFDDNFLQNLK 114
KSEG V DHPVIARLVEIK+LLDKMKQ D+N +L+
Sbjct: 299 KSEGQPVRDHPVIARLVEIKSLLDKMKQLDENLPADLE 336
>ref|XP_002530574.1| something about silencing protein sas10, putative [Ricinus
communis] gi|223529873|gb|EEF31804.1| something about
silencing protein sas10, putative [Ricinus communis]
Length = 639
Score = 75.9 bits (185), Expect(2) = 2e-21
Identities = 60/152 (39%), Positives = 78/152 (51%), Gaps = 37/152 (24%)
Frame = +3
Query: 96 FPSELEEIINEDHGTESG-AKLIEEIV--------------ALAS------EPVSLSDSH 212
FPSE+EE + +++GT +G +K+I+ V ALAS EP + S
Sbjct: 294 FPSEVEEFLKKNNGTVAGESKVIQNAVPAYPSESARKDHNSALASAEADTKEPAKVPCST 353
Query: 213 SSLPVKRS-------------KESMVGSQSMEMLEVRASLEEKLKQKGIFSSVTNKLDIN 353
S L S K V QS+EML+VRA LEEKLKQK + SS KLD
Sbjct: 354 SELVKSESLRDDEIKEKKHKHKTDQVAVQSVEMLKVRAKLEEKLKQKRLLSSFVPKLDKA 413
Query: 354 Q---KLHSRRLETLDDFGDEVMDKDSGNANLS 440
Q K +R+LET DDF D+ +D + GN LS
Sbjct: 414 QKHPKSVNRQLETYDDFNDDAIDVERGNHGLS 445
Score = 51.2 bits (121), Expect(2) = 2e-21
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +1
Query: 1 KSEGHSVCDHPVIARLVEIKNLLDKMKQFDDNF 99
KSEG + DHPVIARLVEIK LL+KMKQ + NF
Sbjct: 262 KSEGQPIRDHPVIARLVEIKGLLEKMKQLNGNF 294
>ref|XP_003520178.1| PREDICTED: uncharacterized protein LOC100812322 [Glycine max]
Length = 673
Score = 61.6 bits (148), Expect(2) = 2e-15
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Frame = +3
Query: 99 PSELEEIINEDHGTESGAKLIEEIVALAS-EPVSLSDSHSSLPVKRS---KESMVGSQSM 266
P+ + II AK EE V E L S +S+ R ++ +G+QS+
Sbjct: 362 PTTADSIIKNQEQPLVSAKSTEETVPNKQFEMQKLETSKNSVQKTRKVKPQKDHIGAQSL 421
Query: 267 EMLEVRASLEEKLKQKGIFSSVTNKLD---INQKLHSRRLETLDDFGDEVMDKDSGNANL 437
EML+VRASLEEKLK KG++SS+ K K + LET DDF D+ MD +G A L
Sbjct: 422 EMLKVRASLEEKLKNKGLYSSIAPKPSNALKRLKPVNGMLETYDDFNDDTMDA-NGEARL 480
Score = 45.4 bits (106), Expect(2) = 2e-15
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +1
Query: 1 KSEGHSVCDHPVIARLVEIKNLLDKMKQFD 90
KSEG V DHP+IARL EIK LLD++KQ D
Sbjct: 304 KSEGQPVYDHPIIARLEEIKKLLDQIKQLD 333
>ref|NP_850397.1| Sas10/U3 ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|20466446|gb|AAM20540.1| unknown protein [Arabidopsis
thaliana] gi|22136384|gb|AAM91270.1| unknown protein
[Arabidopsis thaliana] gi|330255207|gb|AEC10301.1|
Sas10/U3 ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 654
Score = 57.4 bits (137), Expect(2) = 5e-15
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Frame = +3
Query: 108 LEEIINEDHGTESGAKLIEEIVALASEPVSLSDSHSSLPVKRSKES----MVGSQSMEML 275
+++++ ED T + ++ I ++P+ + ++ K K +V QS EML
Sbjct: 348 VQKVVKEDQLTSPVSDSVDRITQDTAKPMKIDNAREEKKKKGEKRKHQNDLVDVQSEEML 407
Query: 276 EVRASLEEKLKQKGIFSSVTNKLDI---NQKLHSRRLETLDDFGDEVMDKDSGNANLS 440
++RA+LE KL+ G+ S +K D QKL +R+LET DD+ D D D+ N++
Sbjct: 408 KLRAALEGKLRTNGVLGSTVSKSDKAQKRQKLANRKLETFDDYVD---DADNSTHNVT 462
Score = 48.1 bits (113), Expect(2) = 5e-15
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KSEGHSVCDHPVIARLVEIKNLLDKMKQFDD 93
KSEG + DHPV+ARLVEIK+LLDK+K+ D+
Sbjct: 299 KSEGQPIRDHPVLARLVEIKSLLDKIKELDE 329