BLASTX nr result
ID: Coptis23_contig00010663
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010663
(372 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 163 2e-38
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 155 2e-36
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 147 1e-33
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
ref|NP_189568.1| pentatricopeptide repeat-containing protein [Ar... 144 1e-32
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 163 bits (412), Expect = 2e-38
Identities = 79/97 (81%), Positives = 83/97 (85%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
L DSY KCGL GV ARK+F M+ERD VSWNSMI GLVK GELGEARRLFDEMPERD V
Sbjct: 156 LIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTV 215
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMV 1
SWNT+LDGY KAGEM+AAFELF KMP RNVVSWSTMV
Sbjct: 216 SWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMV 252
Score = 68.6 bits (166), Expect = 5e-10
Identities = 34/87 (39%), Positives = 53/87 (60%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
+ D Y K G ++ A +LF M R+VVSW++M+ G K+G++ AR LFD+MP ++ V
Sbjct: 220 ILDGYVKAG--EMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLV 277
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPE 31
W ++ GYA+ G A L+ +M E
Sbjct: 278 PWTIMISGYAEKGLAKDAINLYNQMEE 304
>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 155 bits (393), Expect = 2e-36
Identities = 75/97 (77%), Positives = 82/97 (84%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
L DSY KCGL GV+ A KLF M E+D+VSWNSMI GLVK+G+LG AR+LFDEM ERDAV
Sbjct: 162 LIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAV 221
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMV 1
SWNT+LDGY KAGEMS AF LF KMPERNVVSWSTMV
Sbjct: 222 SWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMV 258
Score = 69.7 bits (169), Expect = 2e-10
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
+ D Y K G + A LF M ER+VVSW++M+SG K+G++ AR LFD+MP ++ V
Sbjct: 226 ILDGYVKAG--EMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLV 283
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKM 37
+W ++ G+A+ G A L+ +M
Sbjct: 284 TWTIIISGFAEKGLAKEATTLYNQM 308
>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 147 bits (370), Expect = 1e-33
Identities = 70/97 (72%), Positives = 79/97 (81%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
L DSY +CG G+D A LF AM ERDVV+WNSMI GLV+ GEL A +LFDEMPERD V
Sbjct: 161 LIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMV 220
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMV 1
SWNT+LDGYAKAGEM AFELF +MP+RN+VSWSTMV
Sbjct: 221 SWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMV 257
Score = 76.3 bits (186), Expect = 3e-12
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
+ D Y K G +D A +LF M +R++VSW++M+ G K G++ AR LFD P ++ V
Sbjct: 225 MLDGYAKAG--EMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVV 282
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPE 31
W T++ GYA+ G + A EL+GKM E
Sbjct: 283 LWTTIIAGYAEKGFVREATELYGKMEE 309
>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 144 bits (362), Expect = 1e-32
Identities = 69/97 (71%), Positives = 78/97 (80%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
L DSY +CG G+D A LF AM ERDVV+WNSMI GLV+ GEL A +LFDEMP+RD V
Sbjct: 161 LIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMV 220
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMV 1
SWNT+LDGYAKAGEM AFELF +MP RN+VSWSTMV
Sbjct: 221 SWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMV 257
Score = 75.1 bits (183), Expect = 6e-12
Identities = 37/87 (42%), Positives = 53/87 (60%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
+ D Y K G +D A +LF M R++VSW++M+ G K G++ AR LFD P ++ V
Sbjct: 225 MLDGYAKAG--EMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVV 282
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPE 31
W T++ GYA+ G A EL+GKM E
Sbjct: 283 LWTTIIAGYAEKGLAREATELYGKMEE 309
>ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g29230 gi|9293916|dbj|BAB01819.1| unnamed protein
product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 144 bits (362), Expect = 1e-32
Identities = 70/97 (72%), Positives = 78/97 (80%)
Frame = -1
Query: 291 LFDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAV 112
L D Y +CG GV A KLF MSERD VSWNSM+ GLVK+GEL +ARRLFDEMP+RD +
Sbjct: 158 LIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLI 217
Query: 111 SWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMV 1
SWNT+LDGYA+ EMS AFELF KMPERN VSWSTMV
Sbjct: 218 SWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMV 254