BLASTX nr result
ID: Coptis23_contig00010636
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010636
(2284 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 697 0.0
ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helica... 697 0.0
ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putativ... 681 0.0
ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 681 0.0
ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 677 0.0
>ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 2
[Vitis vinifera]
Length = 828
Score = 697 bits (1798), Expect = 0.0
Identities = 355/547 (64%), Positives = 416/547 (76%), Gaps = 15/547 (2%)
Frame = -3
Query: 2192 AAAAKVRYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPE 2013
A A RYAPEDPTLPKPW+GL+DGKTGYLYFWNP TNVTQY++P P
Sbjct: 3 ATATGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPP 62
Query: 2012 KQPRDTSNE------------EDGCNGGGPKSVVTNGLTQQSMRSEVGHFNEVS---ANA 1878
K S+ + G N K L QQS R H ++ A
Sbjct: 63 KSSASISSSVQVQQSSQGQRRDHGLNEEDDKYNRARNL-QQSARGGTVHSHDPPNGIVGA 121
Query: 1877 NSGGSDVDNKMCNGQVXXXXXXXXXXXXXXXXSVESYRRQHEITVVGNNVPPPFTSFEAT 1698
GGS V + +G S ESYRR+HEITV G++VP PFTSFE+T
Sbjct: 122 GHGGSSVRGQGSSGP-------------GSGASTESYRRRHEITVTGDDVPQPFTSFEST 168
Query: 1697 GFPPELLRTVHNAGFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFMHLKRC 1518
GFPPE++R V++AGFS+PTPIQAQSWP+AL++ DIVAIAKTGSGKTLGYL+PGF+HLKR
Sbjct: 169 GFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRI 228
Query: 1517 GKNPKMGPTVLVLSPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDI 1338
NP+MGPTVLVLSPTRELATQIQDEA KFG+SS +SCTCLYGGA KGPQ+RDL++G DI
Sbjct: 229 RNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADI 288
Query: 1337 VVATPGRLNDILEMGKISLRQISYLVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTA 1158
VVATPGRLNDILEM ++SLRQ+SYLVLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTA
Sbjct: 289 VVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 348
Query: 1157 TWPKSVRNIASELLSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPR 978
TWPK VR IA++LL NPVQVNIG DELVANK+I+Q+VEV+ + +K +RL+QI++SQEP
Sbjct: 349 TWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPG 408
Query: 977 SRILIFCSTKRMCDQLVEYIPRHLGAAAIHGDKSQGERDYVLNQFRNGSSPILVATDVAA 798
S+I+IFCSTK+MCDQL + R GAAAIHGDKSQGERDYVLNQFR G SP+LVATDVAA
Sbjct: 409 SKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAA 468
Query: 797 RGLDVKDIRAVINYDFPTGIEDYVHRIXXXXXXXXXXXAYTFFCDKDAKHASDLIKILEG 618
RGLD+KDIR VINYDFPTG+EDYVHRI AYTFF ++DAK+ASDL+K+LEG
Sbjct: 469 RGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEG 528
Query: 617 ANQKVPP 597
ANQ+VPP
Sbjct: 529 ANQRVPP 535
>ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 1
[Vitis vinifera]
Length = 863
Score = 697 bits (1798), Expect = 0.0
Identities = 355/547 (64%), Positives = 416/547 (76%), Gaps = 15/547 (2%)
Frame = -3
Query: 2192 AAAAKVRYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPE 2013
A A RYAPEDPTLPKPW+GL+DGKTGYLYFWNP TNVTQY++P P
Sbjct: 3 ATATGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPP 62
Query: 2012 KQPRDTSNE------------EDGCNGGGPKSVVTNGLTQQSMRSEVGHFNEVS---ANA 1878
K S+ + G N K L QQS R H ++ A
Sbjct: 63 KSSASISSSVQVQQSSQGQRRDHGLNEEDDKYNRARNL-QQSARGGTVHSHDPPNGIVGA 121
Query: 1877 NSGGSDVDNKMCNGQVXXXXXXXXXXXXXXXXSVESYRRQHEITVVGNNVPPPFTSFEAT 1698
GGS V + +G S ESYRR+HEITV G++VP PFTSFE+T
Sbjct: 122 GHGGSSVRGQGSSGP-------------GSGASTESYRRRHEITVTGDDVPQPFTSFEST 168
Query: 1697 GFPPELLRTVHNAGFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFMHLKRC 1518
GFPPE++R V++AGFS+PTPIQAQSWP+AL++ DIVAIAKTGSGKTLGYL+PGF+HLKR
Sbjct: 169 GFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRI 228
Query: 1517 GKNPKMGPTVLVLSPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDI 1338
NP+MGPTVLVLSPTRELATQIQDEA KFG+SS +SCTCLYGGA KGPQ+RDL++G DI
Sbjct: 229 RNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADI 288
Query: 1337 VVATPGRLNDILEMGKISLRQISYLVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTA 1158
VVATPGRLNDILEM ++SLRQ+SYLVLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTA
Sbjct: 289 VVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 348
Query: 1157 TWPKSVRNIASELLSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPR 978
TWPK VR IA++LL NPVQVNIG DELVANK+I+Q+VEV+ + +K +RL+QI++SQEP
Sbjct: 349 TWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPG 408
Query: 977 SRILIFCSTKRMCDQLVEYIPRHLGAAAIHGDKSQGERDYVLNQFRNGSSPILVATDVAA 798
S+I+IFCSTK+MCDQL + R GAAAIHGDKSQGERDYVLNQFR G SP+LVATDVAA
Sbjct: 409 SKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAA 468
Query: 797 RGLDVKDIRAVINYDFPTGIEDYVHRIXXXXXXXXXXXAYTFFCDKDAKHASDLIKILEG 618
RGLD+KDIR VINYDFPTG+EDYVHRI AYTFF ++DAK+ASDL+K+LEG
Sbjct: 469 RGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEG 528
Query: 617 ANQKVPP 597
ANQ+VPP
Sbjct: 529 ANQRVPP 535
>ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 781
Score = 681 bits (1758), Expect = 0.0
Identities = 347/534 (64%), Positives = 409/534 (76%), Gaps = 3/534 (0%)
Frame = -3
Query: 2189 AAAKVRYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPEK 2010
A A RYAPEDPTLPKPWRGL+DGKTGYLYFWNP TNVTQY++P+
Sbjct: 5 ATAGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPIATALPSKSSLVPISS 64
Query: 2009 QPRDTSNEEDGCNGGGPKSVVTNGLTQQSMRSEVGHFNEVSANANSGG---SDVDNKMCN 1839
+ + G + + G S +FN+ NA GG +V N N
Sbjct: 65 SVQVQQSSRRGYSPVKEEDRYGRGNGSGSKPDAGTNFNQ---NAKGGGFQSQNVPNGTAN 121
Query: 1838 GQVXXXXXXXXXXXXXXXXSVESYRRQHEITVVGNNVPPPFTSFEATGFPPELLRTVHNA 1659
G S E+YRR+HEI+V G++VPPP T+FEATGFP E+LR V +A
Sbjct: 122 GPGGPSARGHGSSAGGSILSPEAYRRRHEISVTGDDVPPPLTTFEATGFPSEILREVLSA 181
Query: 1658 GFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFMHLKRCGKNPKMGPTVLVL 1479
GFS PTPIQAQSWPIAL++ DIVAIAKTGSGKTLGYLLPGF+HLKRC +P++GPTVLVL
Sbjct: 182 GFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPQLGPTVLVL 241
Query: 1478 SPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPGRLNDILE 1299
SPTRELATQIQDEA KFG+SS ISCTCLYGGA KGPQ+++L++GVDIVVATPGRLNDILE
Sbjct: 242 SPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDRGVDIVVATPGRLNDILE 301
Query: 1298 MGKISLRQISYLVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSVRNIASEL 1119
M +ISL Q+SYLVLDEADRMLDMGFEPQIRKI+KE+P++RQTLMYTATWP+ VR IA++L
Sbjct: 302 MRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPREVRKIAADL 361
Query: 1118 LSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIFCSTKRMC 939
L NPVQVNIG DELVANKSI+Q++EV+ +K RRL+QI++SQEP S+I+IFCSTK+MC
Sbjct: 362 LVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKMC 421
Query: 938 DQLVEYIPRHLGAAAIHGDKSQGERDYVLNQFRNGSSPILVATDVAARGLDVKDIRAVIN 759
DQL + R GAAAIHGDKSQ ERD+VL+QFR G SP+LVATDVAARGLD+KDIR VIN
Sbjct: 422 DQLARNLTRTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVIN 481
Query: 758 YDFPTGIEDYVHRIXXXXXXXXXXXAYTFFCDKDAKHASDLIKILEGANQKVPP 597
YDFPTG+EDYVHRI AYTFF D+DAK+ASDLIK+LEGA+Q+VPP
Sbjct: 482 YDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGASQRVPP 535
>ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis
sativus]
Length = 778
Score = 681 bits (1756), Expect = 0.0
Identities = 351/548 (64%), Positives = 410/548 (74%), Gaps = 16/548 (2%)
Frame = -3
Query: 2192 AAAAKVRYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPE 2013
A + RYAPEDPTLPKPWRGL+DGKTGYLYFWNP TNVTQY++P+
Sbjct: 7 AVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISS 66
Query: 2012 ----KQPR---------DTSNEEDGCNGGGPKSVVTNGLTQQSMRSEVGHFNEVSANANS 1872
++P + +N++ G PK V G T QS + G N A
Sbjct: 67 SVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTGHGGAPL 126
Query: 1871 GG---SDVDNKMCNGQVXXXXXXXXXXXXXXXXSVESYRRQHEITVVGNNVPPPFTSFEA 1701
G SD N + ESYR++HEIT G+NVP PF+SFEA
Sbjct: 127 KGHRPSDAGNGIS---------------------AESYRQRHEITFSGDNVPAPFSSFEA 165
Query: 1700 TGFPPELLRTVHNAGFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFMHLKR 1521
TGFPPE+LR VHNAGFS+PTPIQAQSWPIAL++ DIVAIAKTGSGKTLGYL+PGF+HLKR
Sbjct: 166 TGFPPEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKR 225
Query: 1520 CGKNPKMGPTVLVLSPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVD 1341
+PK+GPTVLVLSPTRELATQIQDEA KFG+SS ISC CLYGGA KG Q+RD+++GVD
Sbjct: 226 IRNDPKLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVD 285
Query: 1340 IVVATPGRLNDILEMGKISLRQISYLVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYT 1161
IVVATPGRLNDILEM +ISL Q+SYLVLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYT
Sbjct: 286 IVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 345
Query: 1160 ATWPKSVRNIASELLSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEP 981
ATWPK VR IAS+LL NP+QVNIG DELVANKSI+Q +E + +K RRL+QI++SQEP
Sbjct: 346 ATWPKEVRKIASDLLVNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEP 405
Query: 980 RSRILIFCSTKRMCDQLVEYIPRHLGAAAIHGDKSQGERDYVLNQFRNGSSPILVATDVA 801
S+++IFCSTK+MCDQL + R GAAAIHGDKSQGERD+VL QFR G +P+LVATDVA
Sbjct: 406 GSKVIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVA 465
Query: 800 ARGLDVKDIRAVINYDFPTGIEDYVHRIXXXXXXXXXXXAYTFFCDKDAKHASDLIKILE 621
ARGLD+KDIR VINYDFP+G+EDYVHRI AYTFF ++DAK+ASDLIKILE
Sbjct: 466 ARGLDIKDIRVVINYDFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILE 525
Query: 620 GANQKVPP 597
GANQ+VPP
Sbjct: 526 GANQRVPP 533
>ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
46-like [Cucumis sativus]
Length = 785
Score = 677 bits (1746), Expect = 0.0
Identities = 345/534 (64%), Positives = 404/534 (75%), Gaps = 2/534 (0%)
Frame = -3
Query: 2192 AAAAKVRYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPE 2013
A + RYAPEDPTLPKPWRGL+DGKTGYLYFWNP TNVTQY++P+
Sbjct: 7 AVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISS 66
Query: 2012 KQPRDTSNEEDGCNGGGPKSVVTNGLTQQSMRSEVGHFNEVSANANSGGS-DVDNKMCN- 1839
+ N ++ G + + EV ++ A + S D N N
Sbjct: 67 SVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVEXKIQIVARGETFQSHDTSNGTPNT 126
Query: 1838 GQVXXXXXXXXXXXXXXXXSVESYRRQHEITVVGNNVPPPFTSFEATGFPPELLRTVHNA 1659
G S ESYR++HEIT G+NVP PF+SFEATGFPPE+LR VHNA
Sbjct: 127 GHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNA 186
Query: 1658 GFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFMHLKRCGKNPKMGPTVLVL 1479
GFS+PTPIQAQSWPIAL++ DIVAIAKTGSGKTLGYL+PGF+HLKR +PK+GPTVLVL
Sbjct: 187 GFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVL 246
Query: 1478 SPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPGRLNDILE 1299
SPTRELATQIQDEA KFG+SS ISC CLYGGA KG Q+RD+++GVDIVVATPGRLNDILE
Sbjct: 247 SPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVDIVVATPGRLNDILE 306
Query: 1298 MGKISLRQISYLVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSVRNIASEL 1119
M +ISL Q+SYLVLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTATWPK VR IAS+L
Sbjct: 307 MRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDL 366
Query: 1118 LSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIFCSTKRMC 939
L NP+QVNIG DELVANKSI+Q +E + +K RRL+QI++SQEP S+++IFCSTK+MC
Sbjct: 367 LVNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMC 426
Query: 938 DQLVEYIPRHLGAAAIHGDKSQGERDYVLNQFRNGSSPILVATDVAARGLDVKDIRAVIN 759
DQL + R GAAAIHGDKSQGERD+VL QFR G +P+LVATDVAARGLD+KDIR VIN
Sbjct: 427 DQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVIN 486
Query: 758 YDFPTGIEDYVHRIXXXXXXXXXXXAYTFFCDKDAKHASDLIKILEGANQKVPP 597
YDFP+G+EDYVHRI AYTFF ++DAK+ASDLIKILEGANQ+VPP
Sbjct: 487 YDFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPP 540