BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010612
         (836 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi...   291   9e-77
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]   289   5e-76
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,...   276   3e-72
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ...   268   1e-69
ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|2...   259   5e-67

>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  291 bits (746), Expect = 9e-77
 Identities = 145/204 (71%), Positives = 169/204 (82%), Gaps = 2/204 (0%)
 Frame = -1

Query: 608 VLDSFDT--KTSKGNELKEVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKP 435
           VL+SF    + ++G    E   +E RHPLVRE+CRLI+ R +WNPKLE EL+HLLR+LKP
Sbjct: 42  VLNSFTGGYRQTEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKP 101

Query: 434 QEACMVLQSQADIRIALSFFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMK 255
           ++ C VLQ Q D R+AL FFYWADRQWRYRH P V YAMLE+LS TKL + AKR+LRLM 
Sbjct: 102 RQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMA 161

Query: 254 RRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLE 75
           +R IERRPEAFGYVMVSYSRAGKLRNAMRVL +MQKAG+EPDLSICNTA+HVLVM NRL+
Sbjct: 162 KRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 221

Query: 74  KAVRFLDRMQRVGISPNVVSYNCL 3
           KAVRFL+RMQ V I PNV++YNCL
Sbjct: 222 KAVRFLERMQIVEIEPNVITYNCL 245


>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  289 bits (740), Expect = 5e-76
 Identities = 144/204 (70%), Positives = 168/204 (82%), Gaps = 2/204 (0%)
 Frame = -1

Query: 608 VLDSFDT--KTSKGNELKEVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKP 435
           VL+SF    + ++G    E   +E RHPLVRE+CRLI+ R +WNPKLE EL+HLLR+LKP
Sbjct: 42  VLNSFTGGYRQTEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKP 101

Query: 434 QEACMVLQSQADIRIALSFFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMK 255
           ++ C VLQ Q D R+AL FFYWADRQWRYRH P V YAMLE+LS TKL + AKR+LRLM 
Sbjct: 102 RQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMA 161

Query: 254 RRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLE 75
           +R IERRPEAFGYVMVSYSRAGKLRNAMR L +MQKAG+EPDLSICNTA+HVLVM NRL+
Sbjct: 162 KRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 221

Query: 74  KAVRFLDRMQRVGISPNVVSYNCL 3
           KAVRFL+RMQ V I PNV++YNCL
Sbjct: 222 KAVRFLERMQIVEIXPNVITYNCL 245


>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 737

 Score =  276 bits (707), Expect = 3e-72
 Identities = 135/186 (72%), Positives = 159/186 (85%)
 Frame = -1

Query: 560 EVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKPQEACMVLQSQADIRIALS 381
           E+  EE RHPLVREVCRLI+ R +WN KLE +L+ LLR+LKP++ C VLQ Q+D RIAL 
Sbjct: 62  EIEEEEFRHPLVREVCRLIERRSAWNAKLEGDLRRLLRSLKPRQVCAVLQLQSDERIALD 121

Query: 380 FFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSY 201
           FFYWA RQWRYRH P V Y ML++LS TKL + A+R+LRLM RRGI RRPEAF +VMVSY
Sbjct: 122 FFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSY 181

Query: 200 SRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNV 21
           SRAGKLRNAM+VL +MQKAGVEP+L ICNTA+HVLVMAN+LEKA+RFL+RMQ VGI+PNV
Sbjct: 182 SRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNV 241

Query: 20  VSYNCL 3
           V+YNCL
Sbjct: 242 VTYNCL 247


>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482903|gb|AES64106.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  268 bits (684), Expect = 1e-69
 Identities = 129/186 (69%), Positives = 151/186 (81%)
 Frame = -1

Query: 560 EVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKPQEACMVLQSQADIRIALS 381
           E+   E RHP+VREVCRLI  R +WNPK E  L+HLLR+L P+  C VL+SQ D RIAL 
Sbjct: 123 EIDESEFRHPIVREVCRLISLRSNWNPKFEENLRHLLRSLNPRLVCAVLRSQDDERIALD 182

Query: 380 FFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSY 201
           FFYWADRQWRYRH   V Y ML++LS T+L + A+RILRLM RRGIER PEAF YVMVSY
Sbjct: 183 FFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSY 242

Query: 200 SRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNV 21
           SRAG LRNA+R+L LMQKAGVEPDLSICNTA++VLV  N+LEKA+RFL+RM+  GI P++
Sbjct: 243 SRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDI 302

Query: 20  VSYNCL 3
           VSYNCL
Sbjct: 303 VSYNCL 308


>ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|222859783|gb|EEE97330.1|
           predicted protein [Populus trichocarpa]
          Length = 684

 Score =  259 bits (662), Expect = 5e-67
 Identities = 124/186 (66%), Positives = 154/186 (82%)
 Frame = -1

Query: 560 EVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKPQEACMVLQSQADIRIALS 381
           E+  +E RHPLVRE+CRLI+ R +WN KLE +++HLLR LKP+  C VL SQ+D R+AL 
Sbjct: 9   EIHEDEFRHPLVREICRLIECRSAWNHKLEGKMRHLLRGLKPRLVCAVLLSQSDERVALD 68

Query: 380 FFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSY 201
           FF+W+DRQWRYRH P V   ML++LS TKL + A+R+LRLM RRGI+R P+ F  VMVSY
Sbjct: 69  FFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSY 128

Query: 200 SRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNV 21
           SRAGKLRNAM+VL +MQKAG+EP+L +CNTA+HVLVMAN LEKA+RFL+RMQ +GI PNV
Sbjct: 129 SRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNV 188

Query: 20  VSYNCL 3
           V+YNCL
Sbjct: 189 VTYNCL 194