BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010559
         (700 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003563698.1| PREDICTED: pre-mRNA-processing factor 40 hom...    55   2e-11
gb|EEE54732.1| hypothetical protein OsJ_02081 [Oryza sativa Japo...    54   5e-11
emb|CBI19367.3| unnamed protein product [Vitis vinifera]               65   1e-08
ref|XP_004141297.1| PREDICTED: pre-mRNA-processing protein 40A-l...    63   5e-08
ref|XP_002320019.1| predicted protein [Populus trichocarpa] gi|2...    42   1e-07

>ref|XP_003563698.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like
           [Brachypodium distachyon]
          Length = 998

 Score = 55.5 bits (132), Expect(2) = 2e-11
 Identities = 33/84 (39%), Positives = 41/84 (48%)
 Frame = -2

Query: 408 SPAAENAGVTAALVYTTATRTILEDVSLQEAEKFGNGVSLLDLEEVKKGMAVAGKVNVTA 229
           +P   + GV++  +    +R   E  S        +G S  DLEE KK M  AGK+NVT 
Sbjct: 355 APVTTSTGVSSVAIDAGTSRNNYESSSRTITTDTKDGASAEDLEEAKKTMPTAGKINVTP 414

Query: 228 LEEKAVEAEPLTYATKQYIPCPFK 157
           LEEK  E EP  YA K      FK
Sbjct: 415 LEEKTSEEEPPVYANKLEAKNAFK 438



 Score = 39.3 bits (90), Expect(2) = 2e-11
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
 Frame = -1

Query: 157 EAKDAFKALLESANVEYEWNLTANVESAVERVR--------DREDLFESYFSEVKKKE 8
           EAK+AFKALLESANVE +W+    +   +   R        +R+ ++  Y ++ KK E
Sbjct: 432 EAKNAFKALLESANVESDWSWDQAMRVIINDKRYGALRSHGERKQVYNEYLNQRKKIE 489


>gb|EEE54732.1| hypothetical protein OsJ_02081 [Oryza sativa Japonica Group]
          Length = 1002

 Score = 53.5 bits (127), Expect(2) = 5e-11
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = -2

Query: 330 SLQEAEKFGNGVSLLDLEEVKKGMAVAGKVNVTALEEKAVEAEPLTYATKQYIPCPFK 157
           SL       NG S  +LEE KK MAV GK+NVT +E+K  E EP+TYA K      FK
Sbjct: 387 SLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYANKLEAKNAFK 444



 Score = 39.7 bits (91), Expect(2) = 5e-11
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
 Frame = -1

Query: 157 EAKDAFKALLESANVEYEWN--------LTANVESAVERVRDREDLFESYFSEVKKKE 8
           EAK+AFKALLES+NVE +W         +      A++ + +R+  F  Y ++ KK E
Sbjct: 438 EAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLE 495


>emb|CBI19367.3| unnamed protein product [Vitis vinifera]
          Length = 1030

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = -2

Query: 393 NAGVTAALVYTTATR-TILEDVSLQEAEKFGNGVSLLDLEEVKKGMAVAGKVNVTALEEK 217
           + GV AA +   AT  T  E++S        NG S+ D+EE KKG+AVAGK+NVT LEEK
Sbjct: 403 STGVAAAFINPNATSMTSFENLSADAT----NGASMQDIEEAKKGVAVAGKINVTPLEEK 458

Query: 216 AVEAEPLTYATKQYIPCPFK 157
            ++ EPL Y+TK      FK
Sbjct: 459 TLDDEPLVYSTKLEAKNAFK 478


>ref|XP_004141297.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus]
          Length = 985

 Score = 63.2 bits (152), Expect = 5e-08
 Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
 Frame = -2

Query: 408 SPAAENAGVTAALVYTTATR-TILEDVSLQEAEKFGNGVSLLDLEEVKKGMAVAGKVNVT 232
           S AA       A+V+  A+  T  E ++ Q+ +   +G S  D+EE +KGMAVAGKVN T
Sbjct: 354 SVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNET 413

Query: 231 ALEEKAVEAEPLTYATKQYIPCPFKK--QKMRLKHSW 127
            LEEK+ + EPL +A KQ     FK   + + ++  W
Sbjct: 414 VLEEKSADDEPLVFANKQEAKNAFKALLESVNVQSDW 450


>ref|XP_002320019.1| predicted protein [Populus trichocarpa] gi|222860792|gb|EEE98334.1|
           predicted protein [Populus trichocarpa]
          Length = 1019

 Score = 41.6 bits (96), Expect(2) = 1e-07
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = -2

Query: 405 PAAENAGV---TAALVYTTATRTILEDVSLQEAEKFGNGVSLLDLEEVKKGMAVAGKVNV 235
           P A + G     AA+   T + + ++++  Q A    +G S++D  E  K     GK N 
Sbjct: 368 PTAVSVGTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASMMDTAEFNKVSMDMGKTNA 427

Query: 234 TALEEKAVEAEPLTYATKQYIPCPFK 157
           + LEEK  + EPL +A K      FK
Sbjct: 428 SPLEEKTPDEEPLVFANKLEAKNAFK 453



 Score = 40.4 bits (93), Expect(2) = 1e-07
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
 Frame = -1

Query: 157 EAKDAFKALLESANVEYEWNLTANVE--------SAVERVRDREDLFESYFSEVKKKE 8
           EAK+AFKALLESANV+ +W     +         +A++ + +R+  F  Y  + KK E
Sbjct: 447 EAKNAFKALLESANVQSDWTWEQTMREIINDKRYAALKTLGERKQAFNEYLGQRKKLE 504