BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010536
         (1129 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW90599.1| photosystem I subunit III precursor (chloroplast)...   313   7e-83
gb|AFK41712.1| unknown [Medicago truncatula]                          308   2e-81
gb|AAP03872.1| putative photosystem I subunit III precursor [Nic...   308   2e-81
emb|CAN76343.1| hypothetical protein VITISV_039382 [Vitis vinifera]   308   2e-81
ref|XP_002272584.1| PREDICTED: photosystem I reaction center sub...   306   5e-81

>gb|AFW90599.1| photosystem I subunit III precursor (chloroplast) [Solanum
           tuberosum]
          Length = 228

 Score =  313 bits (801), Expect = 7e-83
 Identities = 159/228 (69%), Positives = 178/228 (78%), Gaps = 4/228 (1%)
 Frame = +2

Query: 248 MSLTIPTTFSKALSNPKLNNQFTPKSRTQ-IVCSSSNEQTQSPTKTXXXXXXXXXXXXXX 424
           MSLTIPT  SK +S  K  +QFT K RT  IVCSS+     + T+               
Sbjct: 1   MSLTIPTNLSKPISTSKFGSQFTTKPRTSAIVCSSNQTPVSNSTEESSSSLKAFSAALAL 60

Query: 425 XXXXXXXXXV---ADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATI 595
                    +   ADI+GLTPCK+SKQFAKREKQ +KKLESSLKLY+PDSAPALAI ATI
Sbjct: 61  SSILLSAPVLPASADISGLTPCKDSKQFAKREKQQIKKLESSLKLYSPDSAPALAINATI 120

Query: 596 EKTKRRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 775
           EKTKRRFDNYGKQGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 776 AIRDEKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 919
           A+RD+KKPT KEIIIDVPLA+RL++RGFIWPVAAYR  + G+LIDP+V
Sbjct: 181 AVRDDKKPTMKEIIIDVPLANRLVWRGFIWPVAAYREYLNGDLIDPNV 228


>gb|AFK41712.1| unknown [Medicago truncatula]
          Length = 224

 Score =  308 bits (789), Expect = 2e-81
 Identities = 160/226 (70%), Positives = 175/226 (77%), Gaps = 2/226 (0%)
 Frame = +2

Query: 248 MSLTIPTTFSKALSN--PKLNNQFTPKSRTQIVCSSSNEQTQSPTKTXXXXXXXXXXXXX 421
           MSLTIPT  SK  S   PKL  +  PK  T I+  S+N++  +                 
Sbjct: 1   MSLTIPTNLSKPTSTLRPKLPQK--PKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALS 58

Query: 422 XXXXXXXXXXVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEK 601
                     VADI+GLTPC+ESKQFAKREKQS+KKLESSLKLYAPDSAPALAI+AT+EK
Sbjct: 59  SILISSPLPAVADISGLTPCRESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKATVEK 118

Query: 602 TKRRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI 781
           TKRRFDNYGKQGLLCGADGLPHLIV+GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI
Sbjct: 119 TKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI 178

Query: 782 RDEKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 919
           RDEKKPT+KEIIIDVPLASRL+FRGF WP+AAYR LV GELI   V
Sbjct: 179 RDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELVNGELIAKDV 224


>gb|AAP03872.1| putative photosystem I subunit III precursor [Nicotiana tabacum]
          Length = 222

 Score =  308 bits (789), Expect = 2e-81
 Identities = 162/227 (71%), Positives = 178/227 (78%), Gaps = 4/227 (1%)
 Frame = +2

Query: 248 MSLTIPTTFSKALSNPKLNNQFTPKSR-TQIVCSSSN---EQTQSPTKTXXXXXXXXXXX 415
           MSLTIPT  SK +S   LN+QFT K R   IVCSSS+   EQ+    K            
Sbjct: 1   MSLTIPTNLSKPIST--LNSQFTKKPRFATIVCSSSSSCDEQSSCNLKAFSAALALSSVL 58

Query: 416 XXXXXXXXXXXXVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATI 595
                        ADI+GLTPCKESKQFAKREKQ +KKLESSLKLYAPDSAPALAIQAT+
Sbjct: 59  LSVPVLPAS----ADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIQATV 114

Query: 596 EKTKRRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 775
           EKTKRRFDNYGKQGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI
Sbjct: 115 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 174

Query: 776 AIRDEKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPS 916
           A+RD+KKPT KEIIIDVPLA++L++RGF WPVAAYR  + GELIDP+
Sbjct: 175 AVRDDKKPTMKEIIIDVPLANKLIWRGFSWPVAAYREYLNGELIDPN 221


>emb|CAN76343.1| hypothetical protein VITISV_039382 [Vitis vinifera]
          Length = 221

 Score =  308 bits (788), Expect = 2e-81
 Identities = 161/224 (71%), Positives = 172/224 (76%)
 Frame = +2

Query: 248 MSLTIPTTFSKALSNPKLNNQFTPKSRTQIVCSSSNEQTQSPTKTXXXXXXXXXXXXXXX 427
           MSLTIPT  SK L  P+L++    K+R  IVCS+S E    PT                 
Sbjct: 1   MSLTIPTNLSKPLK-PRLSSPSFQKARPMIVCSASTEP--QPTNKSPLQAFSAALALSSI 57

Query: 428 XXXXXXXXVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEKTK 607
                    ADIAGLTPCKESKQFAKREKQ++KKLESSLKLYAPDSAPALAI ATIEKTK
Sbjct: 58  ILAAPVPAYADIAGLTPCKESKQFAKREKQALKKLESSLKLYAPDSAPALAINATIEKTK 117

Query: 608 RRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 787
           RRF NY  QGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD
Sbjct: 118 RRFTNYANQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 177

Query: 788 EKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 919
           EKKPT+KEIIIDVPLASRL+FRGFIWPVAAYR  V G+LI   V
Sbjct: 178 EKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLIAKDV 221


>ref|XP_002272584.1| PREDICTED: photosystem I reaction center subunit III, chloroplastic
           isoform 1 [Vitis vinifera]
           gi|359495313|ref|XP_003634953.1| PREDICTED: photosystem
           I reaction center subunit III, chloroplastic isoform 2
           [Vitis vinifera]
          Length = 221

 Score =  306 bits (785), Expect = 5e-81
 Identities = 160/224 (71%), Positives = 172/224 (76%)
 Frame = +2

Query: 248 MSLTIPTTFSKALSNPKLNNQFTPKSRTQIVCSSSNEQTQSPTKTXXXXXXXXXXXXXXX 427
           MSLTIPT  SK L  P+L++    K+R  IVCS+S E    PT                 
Sbjct: 1   MSLTIPTNLSKPLK-PRLSSPSFQKARPMIVCSASTEP--QPTNKSPLQAFSAALALSSI 57

Query: 428 XXXXXXXXVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEKTK 607
                    ADIAGLTPCKESKQFAKREKQ++KKLESSLKLYAPDSAPALAI ATIEKTK
Sbjct: 58  ILAAPVPAYADIAGLTPCKESKQFAKREKQALKKLESSLKLYAPDSAPALAINATIEKTK 117

Query: 608 RRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 787
           RRF NY  QGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD
Sbjct: 118 RRFTNYANQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 177

Query: 788 EKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 919
           +KKPT+KEIIIDVPLASRL+FRGFIWPVAAYR  V G+LI   V
Sbjct: 178 DKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLIAKDV 221