BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010530
         (1625 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   440   e-121
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   435   e-119
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              431   e-118
ref|XP_002322717.1| predicted protein [Populus trichocarpa] gi|2...   429   e-117
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...   424   e-116

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  440 bits (1132), Expect = e-121
 Identities = 225/299 (75%), Positives = 254/299 (84%)
 Frame = -2

Query: 1525 DASGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASADGSAL 1346
            + SGDL+ EMEVDAFRRLFPLR++ER LL+SIRPDARPLG+ARDT++ALGAVASADGSAL
Sbjct: 5    NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64

Query: 1345 VKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRPAEAAPVLSKQLT 1166
             KIG TTMLAA+KMEVMTP  ESP EG IAI+F+MPPICSPL+RPGRPAE APV+SKQL+
Sbjct: 65   AKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLS 124

Query: 1165 DIILSSEMVDLKELCLIPGKAAWMAYLDIYCXXXXXXXXXXXXLSAVAAFSHLCIPAVSV 986
            D ILSS M++LKEL L+ GKAAWMAYLDIYC            L+AVAAFSHL IP VS+
Sbjct: 125  DTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSL 184

Query: 985  NDEGRVFAISEEQIEGKSLKEPLNKGKRKLTLSCTPLALTCILHKKYILADPTAEEESIM 806
            N+EGRV  +SEE  EGKS KEP+NKGKRKLTLS  P +LTCILHK YILADPTAEEESIM
Sbjct: 185  NEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIM 244

Query: 805  ETLATVVLDMSGRLVSFYKPGGTFLAYTSAVQDCISLTRQRVKELQEILTEAIADLELD 629
            ETL TVVLD SG+LVS YKPGG  LAY SAVQDCI+LTRQRVKEL+ IL EAI+D+E+D
Sbjct: 245  ETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
            gi|223528261|gb|EEF30313.1| exosome complex exonuclease
            rrp43, putative [Ricinus communis]
          Length = 303

 Score =  435 bits (1118), Expect = e-119
 Identities = 219/303 (72%), Positives = 250/303 (82%)
 Frame = -2

Query: 1537 MGLTDASGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASAD 1358
            MGL + SGDL+ EME DAFRRLFPL F+ERHL ESIRPD R LG+ARDTT+ALGAV SAD
Sbjct: 1    MGLPNVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSAD 60

Query: 1357 GSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRPAEAAPVLS 1178
            GSA+ KIG TTM+AAIKMEVMTP+SESP EGCIAIDFHMPPICSPL+RPGRPAEAAPV+S
Sbjct: 61   GSAIAKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVS 120

Query: 1177 KQLTDIILSSEMVDLKELCLIPGKAAWMAYLDIYCXXXXXXXXXXXXLSAVAAFSHLCIP 998
            KQL+D I+SS M+DLKEL L+ GKAAWMAYLDIYC             SAVAAF++L IP
Sbjct: 121  KQLSDTIMSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIP 180

Query: 997  AVSVNDEGRVFAISEEQIEGKSLKEPLNKGKRKLTLSCTPLALTCILHKKYILADPTAEE 818
             VS+ND+G+V  +S+E   GK  KE +NK KRKLTL   P +LTC+LHK YILADPTAEE
Sbjct: 181  IVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEE 240

Query: 817  ESIMETLATVVLDMSGRLVSFYKPGGTFLAYTSAVQDCISLTRQRVKELQEILTEAIADL 638
            ESIMETL TVVLD S RLVSFYKPGG  LAYTSAVQDC++LTRQRVKELQ IL EA++ +
Sbjct: 241  ESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGM 300

Query: 637  ELD 629
            ++D
Sbjct: 301  QID 303


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  431 bits (1108), Expect = e-118
 Identities = 224/307 (72%), Positives = 253/307 (82%), Gaps = 8/307 (2%)
 Frame = -2

Query: 1525 DASGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASADGSAL 1346
            + SGDL+ EMEVDAFRRLFPLR++ER LL+SIRPDARPLG+ARDT++ALGAVASADGSAL
Sbjct: 5    NVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSAL 64

Query: 1345 VKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRPAEAAPVLSKQLT 1166
             KIG TTMLAA+KMEVMTP  ESP EG IAI+F+MPPICSPL+RPGRPAE APV+SKQL+
Sbjct: 65   AKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLS 124

Query: 1165 DIILS--------SEMVDLKELCLIPGKAAWMAYLDIYCXXXXXXXXXXXXLSAVAAFSH 1010
            D IL         S M++LKEL L+ GKAAWMAYLDIYC            L+AVAAFSH
Sbjct: 125  DTILRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSH 184

Query: 1009 LCIPAVSVNDEGRVFAISEEQIEGKSLKEPLNKGKRKLTLSCTPLALTCILHKKYILADP 830
            L IP VS+N+EGRV  +SEE  EGKS KEP+NKGKRKLTLS  P +LTCILHK YILADP
Sbjct: 185  LRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADP 244

Query: 829  TAEEESIMETLATVVLDMSGRLVSFYKPGGTFLAYTSAVQDCISLTRQRVKELQEILTEA 650
            TAEEESIMETL TVVLD SG+LVS YKPGG  LAY SAVQDCI+LTRQRVKEL+ IL EA
Sbjct: 245  TAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEA 304

Query: 649  IADLELD 629
            I+D+E+D
Sbjct: 305  ISDMEVD 311


>ref|XP_002322717.1| predicted protein [Populus trichocarpa] gi|222867347|gb|EEF04478.1|
            predicted protein [Populus trichocarpa]
          Length = 439

 Score =  429 bits (1102), Expect = e-117
 Identities = 225/318 (70%), Positives = 254/318 (79%), Gaps = 20/318 (6%)
 Frame = -2

Query: 1537 MGLTDASGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASAD 1358
            MG+ DASGDL+ EMEVDAFR LFPLR++ERHL ESIRPDARPLG+ARDTT+ALGAVASA 
Sbjct: 1    MGVPDASGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAH 60

Query: 1357 GSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRPAEAAPVLS 1178
            GSAL KIG TTMLAAIKMEVMTP++ESP EGCIAIDFHMPPICSP++RPGRPAEAAPV+S
Sbjct: 61   GSALAKIGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVIS 120

Query: 1177 KQLTD-----------------IILSSE---MVDLKELCLIPGKAAWMAYLDIYCXXXXX 1058
            KQL+D                 +IL +E   M++LKEL L+ GKAAWMAYLDIYC     
Sbjct: 121  KQLSDTISRQVKFSASIDSPQRLILHAEISGMINLKELSLVSGKAAWMAYLDIYCLDADG 180

Query: 1057 XXXXXXXLSAVAAFSHLCIPAVSVNDEGRVFAISEEQIEGKSLKEPLNKGKRKLTLSCTP 878
                   LSAVAAFSHL IP VS+ND+G++  +SEE    K  KEP+NK KRKLTLS  P
Sbjct: 181  ALFDAALLSAVAAFSHLQIPIVSLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIP 240

Query: 877  LALTCILHKKYILADPTAEEESIMETLATVVLDMSGRLVSFYKPGGTFLAYTSAVQDCIS 698
             +LTCILHK YILADPTAEEESIMETL TVVLD S RLVSFYKPGG+  AYTSAV+DC++
Sbjct: 241  FSLTCILHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVA 300

Query: 697  LTRQRVKELQEILTEAIA 644
            LTRQRVKELQEIL EAI+
Sbjct: 301  LTRQRVKELQEILDEAIS 318


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
            gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
            complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score =  424 bits (1089), Expect = e-116
 Identities = 215/304 (70%), Positives = 251/304 (82%), Gaps = 1/304 (0%)
 Frame = -2

Query: 1537 MGLTDA-SGDLAGEMEVDAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGAVASA 1361
            MGL +A SGDL+ +MEVDAFRRLFP++FYERHL ESIRPD R LGKARDTT+ALG V+SA
Sbjct: 1    MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 1360 DGSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRPAEAAPVL 1181
            +GSAL KIG TTMLAAIKMEVMTP+ ESP EGCIA+DFHMPP+CSP++RPGRPAEAAPV+
Sbjct: 61   NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 1180 SKQLTDIILSSEMVDLKELCLIPGKAAWMAYLDIYCXXXXXXXXXXXXLSAVAAFSHLCI 1001
            SKQL+D I SS M+DL+EL L+ GKAAWMAYLDIYC            LSA AAFSHL I
Sbjct: 121  SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 1000 PAVSVNDEGRVFAISEEQIEGKSLKEPLNKGKRKLTLSCTPLALTCILHKKYILADPTAE 821
            P V++ND+G+V  + EE+      KEP+NK  RKL L+  P +LTC+LHKKYILADPTAE
Sbjct: 181  PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 240

Query: 820  EESIMETLATVVLDMSGRLVSFYKPGGTFLAYTSAVQDCISLTRQRVKELQEILTEAIAD 641
            EES+MET+ TVVLD SG+LVSFYKPGG+ LAYTSAVQDCI+LTRQR KELQ IL EAI+ 
Sbjct: 241  EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 640  LELD 629
            +E+D
Sbjct: 301  MEID 304