BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010525
         (1110 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   332   1e-88
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   313   5e-83
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   299   7e-79
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   297   3e-78
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   296   5e-78

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  332 bits (850), Expect = 1e-88
 Identities = 168/232 (72%), Positives = 182/232 (78%), Gaps = 4/232 (1%)
 Frame = -2

Query: 1109 GVNSCNFIYDXXXXXSQPVVIETRTTPALSSKLLLNLEEFLTTDQRLTGD----NXXXXX 942
            G NSCNFI+D     + P  +E    PAL S LL  LEEF+T D++L+ +          
Sbjct: 63   GCNSCNFIFDSSSVPANPN-LENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSL 121

Query: 941  XXXXXXXXLCYIQRVFRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSC 762
                    LCYIQRVFR+G LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSC
Sbjct: 122  LSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC 181

Query: 761  VIGAQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRA 582
            VIGAQHSAFLQQASYITGGVYLKPQ LDGLFQYLSTVFATDL SR  L+LPKPAGVDFRA
Sbjct: 182  VIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRA 241

Query: 581  SCFCHKKTIDMGYICSVCLSIFCKYHKKCSTCGSVFGEAHPEATSTPDRKRK 426
            SCFCHK TIDMGYICSVCLSIFCK+HKKCSTCGSVFG+A  +  S  DRKRK
Sbjct: 242  SCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRK 293


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
            predicted protein [Populus trichocarpa]
          Length = 289

 Score =  313 bits (802), Expect = 5e-83
 Identities = 158/232 (68%), Positives = 180/232 (77%), Gaps = 4/232 (1%)
 Frame = -2

Query: 1109 GVNSCNFIYDXXXXXSQPVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXX 930
            G N+C++IYD     SQ +  E    P+L S LL  LEEF+  D++L  +          
Sbjct: 55   GYNTCDYIYDSSSDASQ-LGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSL 113

Query: 929  XXXXL----CYIQRVFRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSC 762
                L    CYIQRVFRSG LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSC
Sbjct: 114  LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC 173

Query: 761  VIGAQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRA 582
             +GA +SAFLQQASYITGGVY+KPQHLDGLFQYL+TVFATDL SR+ ++LP+PAGVDFRA
Sbjct: 174  YVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRA 233

Query: 581  SCFCHKKTIDMGYICSVCLSIFCKYHKKCSTCGSVFGEAHPEATSTPDRKRK 426
            SCFCHK TIDMGYICSVCLSIFC +HKKCSTCGSVFG+A  + +ST D KRK
Sbjct: 234  SCFCHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRK 285


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  299 bits (766), Expect = 7e-79
 Identities = 152/232 (65%), Positives = 173/232 (74%), Gaps = 4/232 (1%)
 Frame = -2

Query: 1109 GVNSCNFIYDXXXXXSQPVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXX 930
            G  SC ++Y+     +    +E    PAL ++LL NLEEF+  D++   ++         
Sbjct: 63   GYASCKYLYNSSSYSNHG--LEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120

Query: 929  XXXXL----CYIQRVFRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSC 762
                L    CYIQ+VFRSGSLHPQPRILCLQGSPDG EQYVA+MN+IFSAQRSMVPIDSC
Sbjct: 121  LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180

Query: 761  VIGAQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRA 582
             IG+ +SAFLQQASYITGGVYLKPQ +DGLFQYLSTVF TDL SR  L+LPK  GVDFRA
Sbjct: 181  YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240

Query: 581  SCFCHKKTIDMGYICSVCLSIFCKYHKKCSTCGSVFGEAHPEATSTPDRKRK 426
            SCFCHKKTIDMGY+CSVCLSIFCK+HKKCSTCGSVFGE   E  S    KRK
Sbjct: 241  SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRK 292


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
            lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
            ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  297 bits (761), Expect = 3e-78
 Identities = 153/235 (65%), Positives = 177/235 (75%), Gaps = 7/235 (2%)
 Frame = -2

Query: 1109 GVNSCNFIYDXXXXXSQPVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXX 948
            G +SC++IYD     +   +    T  PAL   LL  LE+F+T D+ L+      D    
Sbjct: 63   GYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPS 122

Query: 947  XXXXXXXXXXLCYIQRVFRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPID 768
                      LCYIQRVFRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPID
Sbjct: 123  CLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPID 182

Query: 767  SCVIGAQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDF 588
            SC IG Q+SAFLQQASYITGGV+  P+ LDGLFQYL+T+FATDL SR+ ++LPKP GVDF
Sbjct: 183  SCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDF 242

Query: 587  RASCFCHKKTIDMGYICSVCLSIFCKYHKKCSTCGSVFGEAH-PEATSTPDRKRK 426
            RASCFCHKKTIDMGYICSVCLSIFC++HKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 243  RASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRK 297


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
            thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis
            thaliana] gi|92856638|gb|ABE77412.1| At1g18340
            [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1|
            transcription initiation factor TFIIH subunit H3
            [Arabidopsis thaliana]
          Length = 301

 Score =  296 bits (759), Expect = 5e-78
 Identities = 153/235 (65%), Positives = 175/235 (74%), Gaps = 7/235 (2%)
 Frame = -2

Query: 1109 GVNSCNFIYDXXXXXSQPVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXX 948
            G +SC++IYD     +        T  PA+   LL  LEEF+T D+ L+      D    
Sbjct: 63   GYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPS 122

Query: 947  XXXXXXXXXXLCYIQRVFRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPID 768
                      LCYIQRVFRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPID
Sbjct: 123  CLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPID 182

Query: 767  SCVIGAQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDF 588
            SC IG Q+SAFLQQASYITGGV+  P+ LDGLFQYL+T+FATDL SR  ++LPKP GVDF
Sbjct: 183  SCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDF 242

Query: 587  RASCFCHKKTIDMGYICSVCLSIFCKYHKKCSTCGSVFGEAH-PEATSTPDRKRK 426
            RASCFCHKKTIDMGYICSVCLSIFC++HKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 243  RASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRK 297