BLASTX nr result

ID: Coptis23_contig00010506 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010506
         (728 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17643.3| unnamed protein product [Vitis vinifera]              160   3e-37
ref|XP_002278899.1| PREDICTED: uncharacterized protein LOC100259...   160   3e-37
ref|XP_002329002.1| predicted protein [Populus trichocarpa] gi|2...   155   8e-36
ref|XP_002514856.1| conserved hypothetical protein [Ricinus comm...   152   7e-35
ref|XP_002325902.1| predicted protein [Populus trichocarpa] gi|1...   148   1e-33

>emb|CBI17643.3| unnamed protein product [Vitis vinifera]
          Length = 144

 Score =  160 bits (405), Expect = 3e-37
 Identities = 83/141 (58%), Positives = 96/141 (68%)
 Frame = -3

Query: 627 LVLLPFSIGCTSQSSVAVIESSPKKPKQEPDPSPIREVGEEEYLPSGKMKNPIGLLALPK 448
           LV+LPF+ GC S +SVAV E  P++ K + + S IR   E++   S  MKN   LLALPK
Sbjct: 4   LVVLPFTAGCVSYASVAVSEQQPRRSKPDTNSSTIRAQEEDQESFSDSMKNSFRLLALPK 63

Query: 447 PNISSGIQRLVKSFKSLSQLFVYKXXXXXXXXXXEIGCPTDVKHVTHIGWDGSATTNPLM 268
           PNIS+G  RLVK FK+ SQ FV K          +IG PTDVKHVTHIGWDGSATTNP+ 
Sbjct: 64  PNISTGFHRLVKGFKNFSQFFVPKEDMEDSDEEMQIGFPTDVKHVTHIGWDGSATTNPIK 123

Query: 267 GWDELRAPELLSLPTYSLRQF 205
           GWD L  PELLSLP  SLRQF
Sbjct: 124 GWDNLIPPELLSLPAVSLRQF 144


>ref|XP_002278899.1| PREDICTED: uncharacterized protein LOC100259906 [Vitis vinifera]
          Length = 148

 Score =  160 bits (405), Expect = 3e-37
 Identities = 83/141 (58%), Positives = 96/141 (68%)
 Frame = -3

Query: 627 LVLLPFSIGCTSQSSVAVIESSPKKPKQEPDPSPIREVGEEEYLPSGKMKNPIGLLALPK 448
           LV+LPF+ GC S +SVAV E  P++ K + + S IR   E++   S  MKN   LLALPK
Sbjct: 8   LVVLPFTAGCVSYASVAVSEQQPRRSKPDTNSSTIRAQEEDQESFSDSMKNSFRLLALPK 67

Query: 447 PNISSGIQRLVKSFKSLSQLFVYKXXXXXXXXXXEIGCPTDVKHVTHIGWDGSATTNPLM 268
           PNIS+G  RLVK FK+ SQ FV K          +IG PTDVKHVTHIGWDGSATTNP+ 
Sbjct: 68  PNISTGFHRLVKGFKNFSQFFVPKEDMEDSDEEMQIGFPTDVKHVTHIGWDGSATTNPIK 127

Query: 267 GWDELRAPELLSLPTYSLRQF 205
           GWD L  PELLSLP  SLRQF
Sbjct: 128 GWDNLIPPELLSLPAVSLRQF 148


>ref|XP_002329002.1| predicted protein [Populus trichocarpa] gi|222839236|gb|EEE77587.1|
           predicted protein [Populus trichocarpa]
          Length = 169

 Score =  155 bits (392), Expect = 8e-36
 Identities = 88/160 (55%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
 Frame = -3

Query: 627 LVLLPFSIGCTSQSSVAVIESSPKKPKQEPDPSPIREVGEEEYLPSG--KMKNPIGLLAL 454
           LVLLPFS GC S+SSVA+    P++ K + + S  R   E+E   S    MK  +  LAL
Sbjct: 8   LVLLPFSFGCVSESSVAIGVHQPRRAKTDTNLSATRTKEEDEESSSSAESMKTSLKFLAL 67

Query: 453 PKPNISSGIQRLVKSFKSLSQLFVYKXXXXXXXXXXEIGCPTDVKHVTHIGWDGSA-TTN 277
            KPNIS+G+ RL+K FK+ SQLF YK          EIG PTDVKHVTHIGWD SA TTN
Sbjct: 68  SKPNISTGLHRLIKGFKNFSQLFAYKEEIEEFEMEMEIGLPTDVKHVTHIGWDASAPTTN 127

Query: 276 PLMGWDELRAPELLSLPTYSLRQFELAMASQADSPVNIAS 157
           P+ GWD L +PELL L +   RQFELAMA+QA+SP+  AS
Sbjct: 128 PVHGWDNLISPELLHLQSGISRQFELAMAAQANSPLVGAS 167


>ref|XP_002514856.1| conserved hypothetical protein [Ricinus communis]
           gi|223545907|gb|EEF47410.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 174

 Score =  152 bits (384), Expect = 7e-35
 Identities = 87/158 (55%), Positives = 104/158 (65%), Gaps = 8/158 (5%)
 Frame = -3

Query: 627 LVLLPFSIGCTSQSSVA----VIESSPKKPKQEPDPSPI---REVGEEEYLPSGKMKNPI 469
           LVLLPFSIGC S+SSVA    V      KP  + +PSPI   +E  EE    +  MKN +
Sbjct: 8   LVLLPFSIGCVSESSVAIGHHVHHPRGSKPPPDSNPSPIIRTKEEDEESLSSTESMKNAM 67

Query: 468 GLLALPKPNISSGIQRLVKSFKSLSQLFVYKXXXXXXXXXXEIGCPTDVKHVTHIGWDGS 289
            + AL KPNIS+   R+VK FK+ SQLFVY+           IG PTDVKHVTHIGWDGS
Sbjct: 68  KVFALSKPNISNRFHRIVKGFKTFSQLFVYEEEIEELEME--IGLPTDVKHVTHIGWDGS 125

Query: 288 ATTNPLMGWDELRAPELLSL-PTYSLRQFELAMASQAD 178
           A TNP+ GW+ L +PELL+L P  SLRQFEL+MA+Q D
Sbjct: 126 ANTNPIQGWENLISPELLTLQPPNSLRQFELSMAAQTD 163


>ref|XP_002325902.1| predicted protein [Populus trichocarpa] gi|118481449|gb|ABK92667.1|
           unknown [Populus trichocarpa]
           gi|222862777|gb|EEF00284.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  148 bits (374), Expect = 1e-33
 Identities = 83/160 (51%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
 Frame = -3

Query: 627 LVLLPFSIGCTSQSSVAVIESSPKKPKQEPDPSPIREVGEEEYLPSG--KMKNPIGLLAL 454
           LVLLPFSIGC S+SSVA+     K+ K + + S  R   E+E   S     KN + LLAL
Sbjct: 8   LVLLPFSIGCVSESSVAIGVHQTKRAKTDTNLSASRTQEEDEESSSSTESTKNSLKLLAL 67

Query: 453 PKPNISSGIQRLVKSFKSLSQLFVYKXXXXXXXXXXEIGCPTDVKHVTHIGWDGSATTNP 274
            KPN+S+G  +LVK  K+  QLF YK          EIG PT+VKHVTHIGWD S  TNP
Sbjct: 68  SKPNVSTGFNKLVKGLKTFPQLFAYKEEMEELEVEMEIGLPTNVKHVTHIGWDDSPNTNP 127

Query: 273 LMGWDELRAPELLSLPTYSLRQFELAMASQADSPVNIASS 154
           + GWD L + +LLSL + + RQFELA+A QA+SP+  ASS
Sbjct: 128 VQGWDNLISTDLLSLQSATSRQFELAIAGQANSPLVRASS 167


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