BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010446
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec...   220   1e-55
ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   216   2e-54
ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   216   2e-54
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec...   211   5e-53
ref|XP_001769615.1| predicted protein [Physcomitrella patens sub...   210   1e-52

>ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Brachypodium distachyon]
          Length = 553

 Score =  220 bits (560), Expect = 1e-55
 Identities = 104/123 (84%), Positives = 111/123 (90%), Gaps = 4/123 (3%)
 Frame = -1

Query: 363 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRI----PNATHFTK 196
           IECLVLGAGQEVGKSCV+VTIGGKRIMFDCGMHMGY D  RYPDF+RI    P  T FT 
Sbjct: 3   IECLVLGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTS 62

Query: 195 SITCIIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEE 16
           +I+C+IITHFHLDHIGALPYFTEVCGY GPIYMTYPTKALAPLMLEDYRKVMVD+RGEEE
Sbjct: 63  AISCVIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEE 122

Query: 15  QFS 7
           Q+S
Sbjct: 123 QYS 125


>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
           predicted protein [Populus trichocarpa]
          Length = 639

 Score =  216 bits (550), Expect = 2e-54
 Identities = 99/119 (83%), Positives = 108/119 (90%)
 Frame = -1

Query: 363 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 184
           IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I  +  F  S+ C
Sbjct: 3   IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDC 62

Query: 183 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFS 7
           +IITHFHLDH+GALPYFTEVCGY+GPIYMTYPTKALAPLMLED+RKV+VDRRGEEEQF+
Sbjct: 63  VIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFT 121


>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223534732|gb|EEF36424.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 963

 Score =  216 bits (549), Expect = 2e-54
 Identities = 98/119 (82%), Positives = 108/119 (90%)
 Frame = -1

Query: 363 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 184
           IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I  +  F  ++ C
Sbjct: 3   IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHC 62

Query: 183 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFS 7
           +IITHFHLDH+GALPYFTEVCGY+GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEEQF+
Sbjct: 63  VIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFT 121


>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Cucumis sativus]
          Length = 649

 Score =  211 bits (537), Expect = 5e-53
 Identities = 96/119 (80%), Positives = 107/119 (89%)
 Frame = -1

Query: 363 IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 184
           I+CLVLGAGQEVGKSCV+VTI GKRIMFDCGMH+GY+D RRYPDFSRI  +  +   ++C
Sbjct: 3   IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSC 62

Query: 183 IIITHFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFS 7
           IIITHFHLDHIGALPYFTEVCGY+GPIYMTYPT ALAP+ LEDYRKVMVDRRGE EQF+
Sbjct: 63  IIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFT 121


>ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162679157|gb|EDQ65608.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 563

 Score =  210 bits (534), Expect = 1e-52
 Identities = 97/115 (84%), Positives = 104/115 (90%)
 Frame = -1

Query: 351 VLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITCIIIT 172
           V GAGQ+VGKSCVIVTIGGK IMFDCGMHMGY DERRYPDFS I  +  FT  I C+I+T
Sbjct: 1   VAGAGQDVGKSCVIVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVT 60

Query: 171 HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFS 7
           HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMV+R+GE+EQFS
Sbjct: 61  HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVERKGEQEQFS 115